Knight Cancer Institute

Research Output

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Conference contribution
2017

Breast cancer histopathology image analysis pipeline for tumor purity estimation

Azimi, V., Chang, Y. H., Thibault, G., Smith, J., Tsujikawa, T., Kukull, B., Jensen, B., Corless, C., Margolin, A. & Gray, J., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 1137-1140 4 p. 7950717

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2013

Isolation and detection of cancer related DNA nanoparticulate biomarkers directly from CLL patient blood "rapid sample to sequence diagnostics"

Heller, M. J., Marciniak, J. & Sonnenberg, A., Aug 9 2013, Technical Proceedings of the 2013 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2013. p. 392-395 4 p. (Technical Proceedings of the 2013 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2013; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2012

Analyzing pathway design from drug perturbation experiments

Berlow, N., Pal, R., Davis, L. & Keller, C., Nov 6 2012, 2012 IEEE Statistical Signal Processing Workshop, SSP 2012. p. 552-555 4 p. 6319757. (2012 IEEE Statistical Signal Processing Workshop, SSP 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Combination therapy design for targeted therapeutics from a drug-protein interaction perspective

Haider, S., Berlow, N., Pal, R., Davis, L. & Keller, C., Dec 1 2012, Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2012. p. 58-61 4 p. 6507726. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Design and fabrication of a large scale electric field array device for directed self-assembly of multilayer bioderivatized nanoparticle materials

Heller, M. J. & Song, Y., Aug 17 2012, Nanotechnology 2012: Electronics, Devices, Fabrication, MEMS, Fluidics and Computational - 2012 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2012. p. 459-462 4 p. (Technical Proceedings of the 2012 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Peptide nanoparticle catalysis

Heller, M. J., Cheung, M. & Takahashi, T., Aug 20 2012, Technical Proceedings of the 2012 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2012. p. 499-501 3 p. (Technical Proceedings of the 2012 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sparse Bayesian graphical models for RPPA time course data

Mitra, R., Mueller, P., Ji, Y., Mills, G. & Lu, Y., Dec 1 2012, Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2012. p. 113-117 5 p. 6507742. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2011

An AC Electrokinetic Device for the rapid separation and detection of cancer related DNA nanoparticulate biomarkers

Krishnan, R., Charlot, D., Kumosa, L., Hanna, W., Lu, J., Sonnenberg, A. & Heller, M., Dec 1 2011, 2011 IEEE Biomedical Circuits and Systems Conference, BioCAS 2011. p. 373-376 4 p. 6107805. (2011 IEEE Biomedical Circuits and Systems Conference, BioCAS 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Artificial olfaction inside nanostructured infrared fiber arrays

Yaman, M., Yildirim, A. & Bayindir, M., Dec 12 2011, Proceedings - OMN2011: 16th International Conference on Optical MEMS and Nanophotonics. p. 127-128 2 p. 6031105. (International Conference on Optical MEMS and Nanophotonics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Attenuated-affinity biotin analogs for catch-and-release with streptavidin

Ying, L., Branchaud, B. & Corry, S., Nov 23 2011, Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011. p. 151-154 4 p. (Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Bio-insprired optoelectronic digital nose for breath analysis

Bayindir, M., Yildirim, A., Yaman, M. & Vural, M., Nov 23 2011, Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011. p. 20-23 4 p. (Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Nano-structured organically modified silica thin films for functional surfaces

Bayindir, M., Yildirim, A., Budunoglu, H., Yaman, M., Deniz, H. & Guler, M. O., Nov 23 2011, Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011. p. 379-382 4 p. (Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

New high conductance DEP devices for detection of cancer related DNA nanoparticulate biomarkers and nanoparticles in whole blood

Heller, M. J. & Sonnenberg, A., Nov 23 2011, Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011. p. 360-363 4 p. (Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ultrasound mediated localized drug delivery

Ibsen, S., Benchimol, M., Simberg, D. & Esener, S., Jan 1 2011, Nano-Biotechnology for Biomedical and Diagnostic Research. Springer New York LLC, p. 145-153 9 p. (Advances in Experimental Medicine and Biology; vol. 733).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

14 Scopus citations

Ultrasound-modulated fluorescent contrast agent for optical imaging through turbid media

Schutt, C. E., Benchimol, M. J., Hsu, M. J. & Esener, S. C., Nov 7 2011, Unconventional Imaging, Wavefront Sensing, and Adaptive Coded Aperture Imaging and Non-Imaging Sensor Systems. 81650B. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8165).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Ultrasound-quenchable fluorescent contrast agent: Experimental demonstration

Benchimol, M. J., Hsu, M. J., Schutt, C. E. & Esener, S. C., Jan 1 2011, Optical Molecular Probes, Imaging and Drug Delivery, OMP 2011. Optical Society of American (OSA), (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2010

All-optical inverter with a vertical-cavity semiconductor optical amplifier

Hurtado, A., Gauss, V., Jorgesen, D., Esener, S. & Adams, M. J., Dec 1 2010, Nonlinear Photonics, NP 2010. (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Detection of cancer related DNA nanoparticulate biomarkers and nanoparticles in whole blood

Heller, M. J., Krishnan, R. & Sonnenberg, A., Nov 9 2010, Nanotechnology 2010: Bio Sensors, Instruments, Medical, Environment and Energy - Technical Proceedings of the 2010 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2010. p. 372-375 4 p. (Nanotechnology 2010: Bio Sensors, Instruments, Medical, Environment and Energy - Technical Proceedings of the 2010 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2010; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Multilayer BioDerivatized nanoparticle composites by electric field directed self-assembly

Heller, M. J. & Haiso, A. P., Nov 9 2010, Nanotechnology 2010: Bio Sensors, Instruments, Medical, Environment and Energy - Technical Proceedings of the 2010 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2010. p. 250-253 4 p. (Nanotechnology 2010: Bio Sensors, Instruments, Medical, Environment and Energy - Technical Proceedings of the 2010 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2010; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Rapid detection of cancer related DNA nanoparticulate biomarkers and nanoparticles in whole blood

Heller, M. J., Krishnan, R. & Sonnenberg, A., Oct 18 2010, Biosensing III. 77590P. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 7759).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations
2009

Biomolecular sensing with ultrafine optical fibers and plasmonic nanostructures

Sirbuly, D. J., Baker, S., Zlatanovic, S., Steiner, J. & Esener, S., Jan 1 2009, Frontiers in Optics, FiO 2009. Optical Society of America, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2008

Advanced multilayer optical data storage: Origins and future prospect

Esener, S., Mar 21 2008, Advanced Optical Concepts in Quantum Computing, Memory, and Communication. 690302. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 6903).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

All-optical oscillator based on a single bistable Vertical-Cavity Semiconductor Optical Amplifier (VCSOA)

Zhang, H., Marki, C. F., Gross, M., Wen, P. & Esener, S., Sep 15 2008, 2008 Conference on Quantum Electronics and Laser Science Conference on Lasers and Electro-Optics, CLEO/QELS. 4551874. (2008 Conference on Quantum Electronics and Laser Science Conference on Lasers and Electro-Optics, CLEO/QELS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

All-optical oscillator based on a single bistable vertical- cavity semiconductor optical amplifier (VCSOA)

Zhang, H., Marki, C. F., Gross, M., Wen, P. & Esener, S., Jan 1 2008, Conference on Lasers and Electro-Optics, CLEO 2008. Optical Society of America, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cancer monitoring with nanoparticles and microfluidics

Esener, S., Ortac, I., Zlatanovic, S., Liu, Y. T. & Carson, D., Nov 21 2008, Biosensing. 70350F. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 7035).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ovarian cancer: Linking genomics to new target discovery and molecular markers - The way ahead

Hennessy, B. T., Murph, M., Nanjundan, M., Carey, M., Auersperg, N., Almeida, J., Coombes, K. R., Liu, J., Lu, Y., Gray, J. W. & Mills, G. B., Dec 1 2008, Hormonal Carcinogenesis V. Li, J., Li, S., Mohla, S., Rochefort, H., Rochefort, H. & Maudelonde, T. (eds.). p. 23-40 18 p. (Advances in Experimental Medicine and Biology; vol. 617).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations
2007

253GB recorded in two-photon 3D disk

Walker, E., Dvornikov, A. S., Coblentz, K., Esener, S. & Rentzepis, P., Jan 1 2007, Optical Data Storage, ODS 2007. Optical Society of America, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

253GB recorded in two-photon 3D disk

Walker, E., Dvornikov, A. S., Coblentz, K., Esener, S. & Rentzepis, P., Nov 23 2007, Optical Data Storage 2007. 66200A. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 6620).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Annular laser trap: A tool for high-throughput sperm sorting and analysis

Shao, B., Shi, L. Z., Esener, S. C. & Berns, M. W., Jan 1 2007, Frontiers in Optics, FiO 2007. Optical Society of America, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electric field directed fabrication of biosensor devices form biomolecule derivatized nanoparticles

Heller, M. J., Dehlinger, D., Esener, S. & Sullivan, B., Nov 23 2007, Proceedings of the 2nd Frontiers in Biomedical Devices Conference 2007. p. 53-54 2 p. (Proceedings of the 2nd Frontiers in Biomedical Devices Conference 2007).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Electric field process for the fabrication of higher order structures form biomolecule derivatized nanoparticles (#1030)

Heller, M. J., Dehlinger, D., Sullivan, B. & Esener, S., Aug 24 2007, 2007 NSTI Nanotechnology Conference and Trade Show - NSTI Nanotech 2007, Technical Proceedings. p. 269-270 2 p. (2007 NSTI Nanotechnology Conference and Trade Show - NSTI Nanotech 2007, Technical Proceedings; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Fast and power-efficient infrared single-photon upconversion using hot-carrier luminescence

Finkelstein, H., Zhao, K., Gross, M., Lo, Y. H. & Esener, S., Dec 1 2007, Quantum Communications and Quantum Imaging V. 671014. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 6710).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Low power optical bistability in 1550 nm VCSOAs

Jorgesen, D. R., Marki, C. F., Zhang, H., Wen, P. & Esener, S., Jan 1 2007, Quantum Electronics and Laser Science Conference, QELS 2007. Optical Society of America, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Low power optical bistability in 1550 nm VCSOAs

Jorgesen, D. R., Marki, C. F., Zhang, H., Wen, P. & Esener, S., Dec 1 2007, 2007 Quantum Electronics and Laser Science Conference, QELS. 4431439. (Conference on Quantum Electronics and Laser Science (QELS) - Technical Digest Series).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Low power optical bistability in 1550 nm VCSOAs

Jorgesen, D. R., Marki, C. F., Zhang, H., Wen, P. & Esener, S., Jan 1 2007, Photonic Applications Systems Technologies Conference, PhAST 2007. Optical Society of America, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Low power optical bistability in 1550 nm VCSOAs

Jorgesen, D. R., Marki, C. F., Zhang, H., Wen, P. & Esener, S., Dec 1 2007, Conference on Lasers and Electro-Optics, 2007, CLEO 2007. 4453662. (Conference on Lasers and Electro-Optics, 2007, CLEO 2007).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Low power optical bistability in 1550 nm VCSOAs

Jorgesen, D. R., Marki, C. F., Zhang, H., Wen, P. & Esener, S., Jan 1 2007, Conference on Lasers and Electro-Optics, CLEO 2007. Optical Society of America, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2006

An ultrafast Geiger-mode single photon avalanche diode in 0.18 μm CMOS technology

Finkelstein, H., Hsu, M. J. & Esener, S., Dec 1 2006, Advanced Photon Counting Techniques. 63720W. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 6372).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Electric field assisted assembly of functionalized quantum dots into multiple layer thin films

Dehlinger, D. A., Sullivan, B. D., Esener, S. & Heller, M. J., Dec 8 2006, 2006 NSTI Nanotechnology Conference and Trade Show - NSTI Nanotech 2006 Technical Proceedings. p. 389-392 4 p. (2006 NSTI Nanotechnology Conference and Trade Show - NSTI Nanotech 2006 Technical Proceedings; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Electrophoretically actuated nanoscale optoentropic transduction mechanisms

Sullivan, B., Dehlinger, D., Zlatanovic, S., Esener, S. & Heller, M. J., Dec 8 2006, 2006 NSTI Nanotechnology Conference and Trade Show - NSTI Nanotech 2006 Technical Proceedings. p. 209-212 4 p. (2006 NSTI Nanotechnology Conference and Trade Show - NSTI Nanotech 2006 Technical Proceedings; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Observation of wavelength bistability in 850nm Vertical-Cavity Semiconductor Optical Amplifiers (VCSOAs)

Zhang, H., Gauss, V., Wen, P. & Esener, S., Jan 1 2006, Frontiers in Optics, FiO 2006. Optical Society of America, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Parallel assisted assembly of multilayer DNA and protein nanoparticle structures using a CMOS electronic array

Heller, M. J., Dehlinger, D. A. & Sullivan, B. D., Dec 1 2006, DNA-BASED NANOSCALE INTEGRATION: International Symposium on DNA-Based Nanoscale Integration. p. 73-81 9 p. (AIP Conference Proceedings; vol. 859).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Performance of NRZ and duobinary modulation formats in Rayleigh and ASE-dominated dense optical links

Marki, C. F., Alic, N., Gross, M., Papen, G., Esener, S. & Radic, S., Dec 14 2006, Proceedings - Thirteenth International Symposium on Temporal Representation and Reasoning, TIME 2006. 1636987. (2006 Optical Fiber Communication Conference, and the 2006 National Fiber Optic Engineers Conference; vol. 2006).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Photonics in computing: Interconnects and beyond

Esener, S. & Wen, P., Jan 1 2006, Frontiers in Optics, FiO 2006. Optical Society of America, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Using optical forces for the characterization of biological cell activities

Esener, S., Shao, B., Zlatanovic, S., Birkbeck, A. & Flynn, R., Dec 1 2006, 2006 Digest of the LEOS Summer Topical Meetings. p. 27-28 2 p. 1693964. (LEOS Summer Topical Meeting).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2005

Dynamically adjustable annular laser trapping for sperm chemotaxis study

Shao, B., Song, D., Zlatanovic, S., Esener, S. C., Vinson, J., Botvinick, E. L. & Berns, M. W., Jan 1 2005, Information Photonics, IP 2005. Optical Society of America, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dynamically adjustable annular laser trapping for sperm chemotaxis study

Shao, B., Song, D., Zlatanovic, S., Esener, S. C., Vinson, J., Botvinick, E. L. & Berns, M. W., Dec 1 2005, 2005 OSA Topical Meeting on Information Photonics, IP 2005. 5411892. (2005 OSA Topical Meeting on Information Photonics, IP 2005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Fabrication of photonic transfer DNA-quantum dot nanostructures

Heller, M. J., Sullivan, B. & Dehlinger, D., Dec 1 2005, 2005 NSTI Nanotechnology Conference and Trade Show - NSTI Nanotech 2005 Technical Proceedings. Laudon, M. & Romanowicz, B. (eds.). p. 769-772 4 p. (2005 NSTI Nanotechnology Conference and Trade Show - NSTI Nanotech 2005 Technical Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Laser tweezer controlled optical spatial filtering

Birkbeck, A. L., Zlatanovic, S. & Esener, S. C., Dec 1 2005, 2005 OSA Topical Meeting on Information Photonics, IP 2005. 5411895. (2005 OSA Topical Meeting on Information Photonics, IP 2005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Laser tweezer controlled optical spatial filtering

Birkbeck, A. L., Zlatanovic, S. & Esener, S. C., Jan 1 2005, Information Photonics, IP 2005. Optical Society of America, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution