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Visualizing Oxazine 4 nerve-specific fluorescence ex vivo in frozen tissue sections

Barth, C. W. & Gibbs, S. L., Jan 1 2016, Molecular-Guided Surgery: Molecules, Devices, and Applications II. Pogue, B. W. & Gioux, S. (eds.). SPIE, 96960R. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9696).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Variational autoencoding tissue response to microenvironment perturbation

Schau, G. F., Thibault, G., Dane, M. A., Gray, J., Heiser, L. & Chang, Y. H., Jan 1 2019, Medical Imaging 2019: Image Processing. Landman, B. A., Angelini, E. D., Angelini, E. D. & Angelini, E. D. (eds.). SPIE, 109491M. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Spectral decomposition of signaling networks

Parvin, B., Ghosh, N., Heiser, L., Knapp, M., Talcott, C., Laderoute, K., Gray, J. & Spellman, P., 2007, 2007 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology, CIBCB 2007. IEEE Computer Society, p. 76-81 6 p. 4221207. (2007 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology, CIBCB 2007).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Signal removal methods for highly multiplexed immunofluorescent staining using antibody conjugated oligonucleotides

McMahon, N., Jones, J., Eng, J., Kwon, S., Chang, Y. H., Thibault, G., Chin, K., Nederlof, M., Gray, J. & Gibbs, S. L., Jan 1 2019, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XVII. Leary, J. F., Tarnok, A. & Farkas, D. L. (eds.). SPIE, 108810X. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10881).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Quantitative fluorescence nanoscopy for cancer biomedicine

Huang, T., Nickerson, A., Peters, A. & Nan, X., 2015, Proceedings of SPIE - The International Society for Optical Engineering. SPIE, Vol. 9550. 95500O

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Protoporphyrin IX fluorescence imaging of glioma tumor growth in the murine brain

Gibbs, S. L., Ohara, J. A., Hoopes, P. J. & Pogue, B. W., 2006, Biomedical Topical Meeting, BIO 2006. Optical Society of America (OSA), (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Probing the spatiotemporal dynamics of Ras-associated membrane nanodomains with high-throughput single particle tracking via photoactivated localization microscopy (spt-PALM)

Lee, Y., Tao, K., Phelps, C., Huang, T., Mostofian, B., Zuckerman, D. & Nan, X., Jan 1 2020, High-Speed Biomedical Imaging and Spectroscopy V. Tsia, K. K. & Goda, K. (eds.). SPIE, 112500N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11250).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Noninvasive in vivo mapping of intracellular signaling proteins using a pairing of targeted and untargeted fluorescently labeled small molecule kinase inhibitors

Tichauer, K. M., Wang, L., Solanki, A., Korber, J. R., Gibbs, S. L. & Samkoe, K. S., Jan 1 2020, Visualizing and Quantifying Drug Distribution in Tissue IV. Chan, K. F. & Evans, C. L. (eds.). SPIE, 112190K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11219).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

In vivo nerve-specificity of rhodamines and Si-rhodamines

Montano, A. R., Wang, L. G., Barth, C. W., Shams, N. A., Kumarapeli, K. A. S. U. & Gibbs, S. L., Jan 1 2020, Molecular-Guided Surgery: Molecules, Devices, and Applications VI. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 112220I. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11222).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Investigation of oxazine and rhodamine derivatives as peripheral nerve tissue targeting contrast agent for in Vivo fluorescence imaging

Wang, L. G., Barth, C. W., Combs, J. R., Montaño, A. R. & Gibbs, S. L., Jan 1 2019, Molecular-Guided Surgery: Molecules, Devices, and Applications V. Pogue, B. W. & Gioux, S. (eds.). SPIE, 108620H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10862).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Intracellular paired agent imaging enables improved evaluation of tyrosine kinase inhibitor target engagement

Solanki, A., Wang, L., Korber, J., McMahon, N., Tichauer, K., Samkoe, K. S. & Gibbs, S. L., Jan 1 2020, Visualizing and Quantifying Drug Distribution in Tissue IV. Chan, K. F. & Evans, C. L. (eds.). SPIE, 112190F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11219).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Heterogeneity in cancer dynamics: A convex formulation to dissect dynamic trajectories and infer LTV models of networked systems

Dobbe, R., Chang, Y. H., Korkola, J., Gray, J. & Tomlin, C., Jul 28 2015, ACC 2015 - 2015 American Control Conference. Institute of Electrical and Electronics Engineers Inc., p. 4398-4403 6 p. 7172021. (Proceedings of the American Control Conference; vol. 2015-July).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Fluorescent imaging technologies for in situ measurement of drug target engagement and cell signaling pathways

McMahon, N. P., Solanki, A., Jones, J., Kwon, S., Chang, Y. H., Chin, K., Nederlof, M. A., Gray, J. W. & Gibbs, S. L., Jan 1 2020, Visualizing and Quantifying Drug Distribution in Tissue IV. Chan, K. F. & Evans, C. L. (eds.). SPIE, 112190O. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11219).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence image-guided surgery: A perspective on contrast agent development

Barth, C. W. & Gibbs, S. L., Jan 1 2020, Molecular-Guided Surgery: Molecules, Devices, and Applications VI. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 112220J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11222).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Effect of labeling density and time post labeling on quality of antibody-based super resolution microscopy images

Bittel, A. M., Saldivar, I., Dolman, N., Nickerson, A. K., Lin, L. J., Nan, X. & Gibbs, S. L., Jan 1 2015, Single Molecule Spectroscopy and Superresolution Imaging VIII. Gregor, I., Gryczynski, Z. K., Koberling, F., Enderlein, J. & Erdmann, R. (eds.). SPIE, 93310M. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9331).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Diffuse fluorescence tomography analysis of B-scan mode geometry

Kepshire, D., Gibbs, S., Davis, S., Dehghani, H., Paulsen, K. D. & Pogue, B. W., 2006, Biomedical Topical Meeting, BIO 2006. Optical Society of America (OSA), (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Design and development of BODIPY-based photoswitchable fluorophores to visualize cell signaling with multispectral super resolution microscopy

Bittel, A. M., Nickerson, A. K., Lin, L. J., Nan, X. & Gibbs, S. L., Jan 1 2014, Single Molecule Spectroscopy and Superresolution Imaging VII. SPIE, 89500S. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8950).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

cmIF: A Python Library for Scalable Multiplex Imaging Pipelines

Eng, J., Bucher, E., Gray, E., Campbell, L. G., Thibault, G., Heiser, L., Gibbs, S., Gray, J. W., Chin, K. & Chang, Y. H., Jan 1 2019, Mathematical and Computational Oncology - 1st International Symposium, ISMCO 2019, Proceedings. Bebis, G., Benos, T., Chen, K., Jahn, K. & Lima, E. (eds.). Springer, p. 37-43 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11826 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations