Research Output 2012 2019

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Conference contribution
2019

cmIF: A Python Library for Scalable Multiplex Imaging Pipelines

Eng, J., Bucher, E., Gray, E., Campbell, L. G., Thibault, G., Heiser, L., Gibbs, S., Gray, J. W., Chin, K. & Chang, Y. H., Jan 1 2019, Mathematical and Computational Oncology - 1st International Symposium, ISMCO 2019, Proceedings. Bebis, G., Benos, T., Chen, K., Jahn, K. & Lima, E. (eds.). Springer, p. 37-43 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11826 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Python
Pipelines
Imaging
Imaging techniques
Reproducibility

Investigation of oxazine and rhodamine derivatives as peripheral nerve tissue targeting contrast agent for in Vivo fluorescence imaging

Wang, L. G., Barth, C. W., Combs, J. R., Montaño, A. R. & Gibbs, S. L., Jan 1 2019, Molecular-Guided Surgery: Molecules, Devices, and Applications V. Pogue, B. W. & Gioux, S. (eds.). SPIE, 108620H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10862).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Oxazines
Nerve Tissue
Rhodamines
Fluorophores
Optical Imaging

Variational autoencoding tissue response to microenvironment perturbation

Schau, G. F., Thibault, G., Dane, M. A., Gray, J., Heiser, L. & Chang, Y. H., Jan 1 2019, Medical Imaging 2019: Image Processing. Landman, B. A., Angelini, E. D., Angelini, E. D. & Angelini, E. D. (eds.). SPIE, 109491M. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

learning
Learning
Tissue
annotations
perturbation
2016
3 Citations (Scopus)

Visualizing Oxazine 4 nerve-specific fluorescence ex vivo in frozen tissue sections

Barth, C. W. & Gibbs, S., 2016, Molecular-Guided Surgery: Molecules, Devices, and Applications II. SPIE, Vol. 9696. 96960R

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Oxazines
Fluorophores
Frozen Sections
nerves
Fluorescence
2015

Effect of labeling density and time post labeling on quality of antibody-based super resolution microscopy images

Bittel, A. M., Saldivar, I., Dolman, N., Nickerson, A. K., Lin, L. J., Nan, X. & Gibbs, S., 2015, Single Molecule Spectroscopy and Superresolution Imaging VIII. SPIE, Vol. 9331. 93310M

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorophores
antibodies
Antibodies
Labeling
marking

Quantitative fluorescence nanoscopy for cancer biomedicine

Huang, T., Nickerson, A., Peters, A. & Nan, X., 2015, Proceedings of SPIE - The International Society for Optical Engineering. SPIE, Vol. 9550. 95500O

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence
Cancer
cancer
Microscopy
fluorescence
2014

Design and development of BODIPY-based photoswitchable fluorophores to visualize cell signaling with multispectral super resolution microscopy

Bittel, A. M., Nickerson, A. K., Lin, L. J., Nan, X. & Gibbs, S., 2014, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 8950. 89500S

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cell signaling
Fluorophores
Microscopy
Microscopic examination
microscopy