Research Output 1978 2019

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2019

High-dimensional multiplexed immunohistochemical characterization of immune contexture in human cancers

Banik, G., Betts, C. B., Liudahl, S. M., Sivagnanam, S., Kawashima, R., Cotechini, T., Larson, W., Goecks, J., Pai, S. I., Clayburgh, D., Tsujikawa, T. & Coussens, L. M., Jan 1 2019, Methods in Enzymology. Academic Press Inc., (Methods in Enzymology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Tumors
Neoplasms
Tumor Microenvironment
Cells
Immunohistochemistry

Methodology for Detecting and Tracking Brain-Derived Neurotrophic Factor Complexes in Neurons Using Single Quantum Dots

Vermehren-Schmaedick, A., Jacob, T. & Vu, T. T., Jan 1 2019, Neuromethods. Humana Press Inc., p. 105-118 14 p. (Neuromethods; vol. 143).

Research output: Chapter in Book/Report/Conference proceedingChapter

Quantum Dots
Brain-Derived Neurotrophic Factor
Semiconductor quantum dots
Neurons
trkB Receptor
2018
1 Citation (Scopus)

Sensory integration for human balance control

Peterka, R. B., Jan 1 2018, Handbook of Clinical Neurology. Elsevier B.V., p. 27-42 16 p. (Handbook of Clinical Neurology; vol. 159).

Research output: Chapter in Book/Report/Conference proceedingChapter

Systems Integration
Weights and Measures
Torque
Gravitation
Nervous System Diseases
2017

The optics of deep optical imaging in tissues using long wavelengths

Jacques, S., Jan 1 2017, Deep Imaging in Tissue and Biomedical Materials: Using Linear and Nonlinear Optical Methods. Pan Stanford Publishing Pte. Ltd., p. 91-106 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Optical Imaging
Photons
Optics
optics
Tissue
2016

Contact-activation pathways as targets for new anticoagulants

Gailani, D., Renné, T. & Gruber, A., Apr 19 2016, New Therapeutic Agents in Thrombosis and Thrombolysis: Third Edition. CRC Press, p. 377-397 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Anticoagulants
20 Citations (Scopus)

Methods of melanoma detection

Leachman, S., Cassidy, P., Chen, S. C., Curiel, C., Geller, A., Gareau, D., Pellacani, G., Grichnik, J. M., Malvehy, J., North, J., Jacques, S., Petrie, T., Puig, S., Swetter, S. M., Tofte, S. & Weinstock, M. A., 2016, Cancer Treatment and Research. Kluwer Academic Publishers, Vol. 167. p. 51-105 55 p. (Cancer Treatment and Research; vol. 167).

Research output: Chapter in Book/Report/Conference proceedingChapter

Melanoma
Technology
Biopsy
Equipment and Supplies
Comparative Genomic Hybridization
1 Citation (Scopus)

Noninvasive Topical In Vivo Imaging of Skin: Confocal Reflectance Microscopy and Polarized Light Imaging

Jacques, S., Aug 19 2016, Imaging in Dermatology. Elsevier Inc., p. 281-290 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Confocal Microscopy
Light
Skin
Raman Spectrum Analysis
Fluorescence Spectrometry
23 Citations (Scopus)

Polarized light imaging of biological tissues

Jacques, S., Apr 19 2016, Handbook of Biomedical Optics. CRC Press, p. 649-669 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Light polarization
polarized light
Tissue
Imaging techniques
Light

Quantitative super-resolution microscopy for cancer biology and medicine

Peters, A., Nickerson, A., Lin, L. J. & Nan, X., Nov 25 2016, Food as Medicine: Functional Food Plants of Africa. CRC Press, p. 321-355 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Medicine
Microscopy
microscopy
Microscopic examination
medicine
2014

Understanding and Using Information about Cancer Genomes

Spellman, P., Stuart, J. & Gray, J., Mar 2014, The Molecular Basis of Cancer: Fourth Edition. Elsevier Inc.

Research output: Chapter in Book/Report/Conference proceedingChapter

Genome
Neoplasms
2013
5 Citations (Scopus)

Blood Coagulation and Blood - Materials Interactions

Hanson, S. R. & Tucker, E., Jan 1 2013, Biomaterials Science: An Introduction to Materials: Third Edition. Elsevier Inc., p. 551-557 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Confocal laser scanning microscopy using scattering as the contrast mechanism

Jacques, S., Jan 1 2013, Handbook of Coherent-Domain Optical Methods: Biomedical Diagnostics, Environmental Monitoring, and Materials Science:: Second Edition. Springer New York, Vol. 2-2. p. 1157-1171 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Laser modes
Confocal Microscopy
Microscopic examination
Scattering
Scanning

Tracing the endocytic pathways and trafficking kinetics of cell signaling receptors using single QD nanoparticles

Fichter, K. M. & Vu, T. T., 2013, Methods in Molecular Biology. Vol. 991. p. 237-247 11 p. (Methods in Molecular Biology; vol. 991).

Research output: Chapter in Book/Report/Conference proceedingChapter

Quantum Dots
Nanoparticles
Therapeutic Uses
Ligands
2012

Functionalized nanoporous silica for oral chelation therapy of a broad range of radionuclides

Yantasee, W., Chouyyok, W., Wiacek, R. J., Creim, J. A., Addleman, R. S., Fryxell, G. E. & Timchalk, C., Jan 1 2012, Environmental Applications of Nanomaterials: Synthesis, Sorbents and Sensors, 2nd Edition. Imperial College Press, p. 369-379 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

chelation
Speech synthesis
Chelation
Radioisotopes
Silicon Dioxide
31 Citations (Scopus)

Platelet shape change and spreading

Aslan, J., Itakura, A., Gertz, J. M. & McCarty, O., 2012, Methods in Molecular Biology. Vol. 788. p. 91-100 10 p. (Methods in Molecular Biology; vol. 788).

Research output: Chapter in Book/Report/Conference proceedingChapter

Blood Platelets
Interference Microscopy
Pseudopodia
Platelet Activation
Hemostasis
2011
22 Citations (Scopus)

Monte Carlo modeling of light transport in tissue (Steady state and time of flight)

Jacques, S., 2011, Optical-Thermal Response of Laser-Irradiated Tissue. Springer Netherlands, p. 109-144 36 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

diffusion theory
fluence
simulation
curvature
gradients
2009
17 Citations (Scopus)

Mapping tissue optical attenuation to identify cancer using optical coherence tomography.

McLaughlin, R. A., Scolaro, L., Robbins, P., Saunders, C., Jacques, S. & Sampson, D. D., 2009, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 12. p. 657-664 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Optical Coherence Tomography
Lymph Nodes
Lymphatic System
Neoplasms
Neoplasm Metastasis
2007
14 Citations (Scopus)

A framework for cognitive monitoring using computer game interactions.

Jimison, H. B., Pavel, M., Bissell, P. & McKanna, J., 2007, Medinfo. MEDINFO. Pt 2 ed. Vol. 12. p. 1073-1077 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Video Games
Confusion
Cognition
Software
Economics
2006

Alveolar Surface Mechanics

Hall, S. B. & Rugonyi, S., Jan 1 2006, Encyclopedia of Respiratory Medicine, Four-Volume Set. Elsevier Inc., p. 101-106 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mechanics
Surface-Active Agents
Surface Tension
Surface tension
Pulmonary Surfactants
2003
1 Citation (Scopus)

Effect of viscosity and compression rate on the collapse phase transition of pulmonary surfactant at an air-water interface

Rugonyi, S., Smith, E. C. & Hall, S. S., Jun 2 2003, Computational Fluid and Solid Mechanics 2003. Elsevier Inc., p. 1797-1800 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Surface tension
Surface active agents
Phase transitions
Viscosity
Air
2000
2 Citations (Scopus)

Adapting atmospheric LIDAR techniques to imaging biological tissue

Holmes, J. F., Jacques, S. & Hunt, J. M., 2000, Proceedings of SPIE - The International Society for Optical Engineering. Society of Photo-Optical Instrumentation Engineers, Vol. 3914. p. 454-459 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Atmospheric optics
atmospheric optics
Tissue
Imaging techniques
Optical radar
1 Citation (Scopus)

Adaptive transform coding as constrained vector quantization

Archer, C. & Leen, T. K., 2000, Neural Networks for Signal Processing - Proceedings of the IEEE Workshop. IEEE, Vol. 1. p. 308-317 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Vector quantization
Principal component analysis
Image compression
Signal to noise ratio
Experiments

Comparison of PDT efficiencies for photooxidation of substrate (NADPH) using a photosensitizer (Photofrin II)

Bargo, P. R., Diagaradjane, P. & Jacques, S., 2000, Proceedings of SPIE - The International Society for Optical Engineering. Society of Photo-Optical Instrumentation Engineers, Vol. 3909. p. 97-103 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Photodynamic therapy
Photosensitizers
Photooxidation
photooxidation
therapy
2 Citations (Scopus)

Optical assessment of tissue heterogeneity in biomaterials and implants

Jacques, S., 2000, Proceedings of SPIE - The International Society for Optical Engineering. Society of Photo-Optical Instrumentation Engineers, Vol. 3914. p. 576-580 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomaterials
Optical tomography
Tissue
Scattering
Photoacoustic effect
10 Citations (Scopus)

Propagation of polarized light beams through biological tissues

Jacques, S. & Ramella-Roman, J. R., 2000, Proceedings of SPIE - The International Society for Optical Engineering. Society of Photo-Optical Instrumentation Engineers, Vol. 3914. p. 345-352 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Light polarization
muscles
Microspheres
liver
light beams
11 Citations (Scopus)

Scattering of polarized light by biological tissues

Jacques, S., Lee, K. & Roman, J., 2000, Proceedings of SPIE - The International Society for Optical Engineering. Society of Photo-Optical Instrumentation Engineers, Vol. 4001. p. 14-28 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Light polarization
polarized light
Scattering
Tissue
scattering
1999
1 Citation (Scopus)

Acoustically modulated speckle imaging of soft tissue

Kirkpatrick, S. J. & Jacques, S., 1999, American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. ASME, Vol. 43. p. 93-94 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Speckle
Tissue
Imaging techniques
Muscle
Skin

Light dosimetry technique for endoscopic PDT using microlens optical fiber

Jacques, S., 1999, Proceedings of SPIE - The International Society for Optical Engineering. Society of Photo-Optical Instrumentation Engineers, Vol. 3601. p. 455-462 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Photodynamic therapy
Dosimetry
dosimeters
Optical fibers
therapy