Research output per year
Research output per year
Research output
Search results
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2022
In Vitro Flow Chamber Design for the Study of Endothelial Cell (Patho)Physiology
Fallon, M. E., Mathews, R. & Hinds, M. T., Feb 1 2022, In: Journal of Biomechanical Engineering. 144, 2Research output: Contribution to journal › Article › peer-review
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Vascular Graft Implantation Using a Bilateral End-to-Side Aortoiliac Preclinical Model
Nguyen, K. P., Hinds, M. T. & Anderson, D. E. J., 2022, Methods in Molecular Biology. Humana Press Inc., p. 203-215 13 p. (Methods in Molecular Biology; vol. 2375).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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2021
2D MXenes with antiviral and immunomodulatory properties: A pilot study against SARS-CoV-2
Unal, M. A., Bayrakdar, F., Fusco, L., Besbinar, O., Shuck, C. E., Yalcin, S., Erken, M. T., Ozkul, A., Gurcan, C., Panatli, O., Summak, G. Y., Gokce, C., Orecchioni, M., Gazzi, A., Vitale, F., Somers, J., Demir, E., Yildiz, S. S., Nazir, H., Grivel, J. C. & 6 others, , Jun 2021, In: Nano Today. 38, 101136.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery
SMC-RNA Challenge Participants, Aug 18 2021, In: Cell Systems. 12, 8, p. 827-838.e5Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
A gentle introduction to the non-equilibrium physics of trajectories: Theory, algorithms, and biomolecular applications
Zuckerman, D. M. & Russo, J. D., Nov 1 2021, In: American Journal of Physics. 89, 11, p. 1048-1061 14 p.Research output: Contribution to journal › Article › peer-review
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A mathematical model of breast tumor progression based on immune infiltration
Mirzaei, N. M., Su, S., Sofia, D., Hegarty, M., Abdel-Rahman, M. H., Asadpoure, A., Cebulla, C. M., Chang, Y. H., Hao, W., Jackson, P. R., Lee, A. V., Stover, D. G., Tatarova, Z., Zervantonakis, I. K. & Shahriyari, L., Oct 2021, In: Journal of Personalized Medicine. 11, 10, 1031.Research output: Contribution to journal › Article › peer-review
Open Access -
A method for validating depth-resolved biodistributions in topically-stained specimen with multi-channel fluorescence cryo-imaging.
Byrd, B. K., Strawbridge, R. S., Wells, W., Barth, C., Gibbs, S. & Davis, S. C., 2021, Molecular-Guided Surgery: Molecules, Devices, and Applications VII. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 116250X. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11625).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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An expanded universe of cancer targets
the Cancer Target Discovery and Development Network, Mar 4 2021, In: Cell. 184, 5, p. 1142-1155 14 p.Research output: Contribution to journal › Review article › peer-review
15 Scopus citations -
An invertible transform for efficient string matching in Labeled Digraphs
Nellore, A., Nguyen, A. & Thompson, R., Jul 1 2021, 32nd Annual Symposium on Combinatorial Pattern Matching, CPM 2021. Gawrychowski, P. & Starikovskaya, T. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 20. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 191).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Aspirin and antiplatelet treatments in cancer
Tao, D. L., Tassi Yunga, S., Williams, C. D. & McCarty, O. J. T., Jun 10 2021, In: Blood. 137, 23, p. 3201-3211 11 p.Research output: Contribution to journal › Review article › peer-review
4 Scopus citations -
Assessing Mealtime Macronutrient Content: Patient Perceptions Versus Expert Analyses via a Novel Phone App
Gillingham, M. B., Li, Z., Beck, R. W., Calhoun, P., Castle, J. R., Clements, M., Dassau, E., Doyle, F. J., Gal, R. L., Jacobs, P., Patton, S. R., Rickels, M. R., Riddell, M. & Martin, C. K., Feb 2021, In: Diabetes Technology and Therapeutics. 23, 2, p. 85-94 10 p.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Assessment of the effects of Syk and BTK inhibitors on GPVI-mediated platelet signaling and function
Zheng, T. J., Lofurno, E. R., Melrose, A. R., Lakshmanan, H. H. S., Pang, J., Phillips, K. G., Fallon, M. E., Kohs, T. C. L., Ngo, A. T. P., Shatzel, J. J., Hinds, M. T., McCarty, O. J. T. & Aslan, J. E., May 2021, In: American Journal of Physiology - Cell Physiology. 320, 5, p. C902-C915Research output: Contribution to journal › Article › peer-review
3 Scopus citations -
Automated Detection of Real-World Falls: Modeled from People with Multiple Sclerosis
Mosquera-Lopez, C., Wan, E., Shastry, M., Folsom, J., Leitschuh, J., Condon, J., Rajhbeharrysingh, U., Hildebrand, A., Cameron, M. & Jacobs, P. G., Jun 2021, In: IEEE journal of biomedical and health informatics. 25, 6, p. 1975-1984 10 p., 9272845.Research output: Contribution to journal › Article › peer-review
3 Scopus citations -
BET bromodomain inhibition blocks an AR-repressed, E2F1-activated treatment-emergent neuroendocrine prostate cancer lineage plasticity program
Kim, D. H., Sun, D., Storck, W. K., Leng, K. W., Jenkins, C., Coleman, D. J., Sampson, D., Guan, X., Kumaraswamy, A., Rodansky, E. S., Urrutia, J. A., Schwartzman, J. A., Zhang, C., Beltran, H., Labrecque, M. P., Morrissey, C., Lucas, J. M., Coleman, I. M., Nelson, P. S., Corey, E. & 16 others, , Sep 1 2021, In: Clinical Cancer Research. 27, 17, p. 4923-4936 14 p.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Cabozantinib and dasatinib synergize to induce tumor regression in non-clear cell renal cell carcinoma
Lue, H. W., Derrick, D. S., Rao, S., Van Gaest, A., Cheng, L., Podolak, J., Lawson, S., Xue, C., Garg, D., White, R., Ryan, C. W., Drake, J. M., Ritz, A., Heiser, L. M. & Thomas, G. V., May 18 2021, In: Cell Reports Medicine. 2, 5, 100267.Research output: Contribution to journal › Article › peer-review
Open Access -
Causal interactions from proteomic profiles: Molecular data meet pathway knowledge
Babur, Ö., Luna, A., Korkut, A., Durupinar, F., Siper, M. C., Dogrusoz, U., Vaca Jacome, A. S., Peckner, R., Christianson, K. E., Jaffe, J. D., Spellman, P. T., Aslan, J. E., Sander, C. & Demir, E., Jun 11 2021, In: Patterns. 2, 6, 100257.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Cellular senescence in cancer: from mechanisms to detection
Ou, H. L., Hoffmann, R., González-López, C., Doherty, G. J., Korkola, J. E. & Muñoz-Espín, D., Oct 2021, In: Molecular Oncology. 15, 10, p. 2634-2671 38 p.Research output: Contribution to journal › Review article › peer-review
Open Access2 Scopus citations -
Characterization of a pulsatile rotary total artificial heart
Jurney, P. L., Glynn, J. J., Dykan, I. V., Hagen, M. W., Kaul, S., Wampler, R. K., Hinds, M. T. & Giraud, G. D., Feb 2021, In: Artificial Organs. 45, 2, p. 135-142 8 p.Research output: Contribution to journal › Article › peer-review
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Characterizing advanced breast cancer heterogeneity and treatment resistance through serial biopsies and comprehensive analytics
Li, A., Keck, J. M., Parmar, S., Patterson, J., Labrie, M., Creason, A. L., Johnson, B., Downey, M., Thomas, G., Beadling, C., Heiser, L. M., Kolodzie, A., Guimaraes, A., Corless, C. L., Gray, J., Mills, G., Bergan, R. C. & Mitri, Z. I., Dec 2021, In: npj Precision Oncology. 5, 1, 28.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Chemokine signaling in cancer-stroma communications
Singh, A. J. & Gray, J. W., Sep 2021, In: Journal of Cell Communication and Signaling. 15, 3, p. 361-381 21 p.Research output: Contribution to journal › Review article › peer-review
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Clinically relevant dual probe difference specimen imaging (DDSI) protocol for freshly resected breast cancer specimen staining
House, B. J., Kwon, M. J., Schaefer, J. M., Barth, C. W., Solanki, A., Davis, S. C. & Gibbs, S. L., Dec 2021, In: BMC cancer. 21, 1, 440.Research output: Contribution to journal › Article › peer-review
Open Access -
Clinically Translatable Formulation Strategies for Systemic Administration of Nerve-Specific Probes
Barth, C. W., Shah, V. M., Wang, L. G., Antaris, A. L., Klaassen, A., Sorger, J., Rao, D. A., Kerr, D. A., Henderson, E. R., Alani, A. W. G. & Gibbs, S. L., Jul 2021, In: Advanced Therapeutics. 4, 7, 2100002.Research output: Contribution to journal › Article › peer-review
Open Access -
Comparing fall detection methods in people with multiple sclerosis: A prospective observational cohort study
Hildebrand, A., Jacobs, P. G., Folsom, J. G., Mosquera-Lopez, C., Wan, E. & Cameron, M. H., Nov 2021, In: Multiple sclerosis and related disorders. 56, 103270.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Comparison between Closed-Loop Insulin Delivery System (the Artificial Pancreas) and Sensor-Augmented Pump Therapy: A Randomized-Controlled Crossover Trial
Haidar, A., Legault, L., Raffray, M., Gouchie-Provencher, N., Jacobs, P. G., El-Fathi, A., Rutkowski, J., Messier, V. & Rabasa-Lhoret, R., Mar 2021, In: Diabetes Technology and Therapeutics. 23, 3, p. 168-174 7 p.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Connexin 46 and connexin 50 gap junction channel properties are shaped by structural and dynamic features of their N-terminal domains
Yue, B., Haddad, B. G., Khan, U., Chen, H., Atalla, M., Zhang, Z., Zuckerman, D. M., Reichow, S. L. & Bai, D., Jul 1 2021, In: Journal of Physiology. 599, 13, p. 3313-3335 23 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Cross-talk between the complement pathway and the contact activation system of coagulation: Activated factor XI neutralizes complement factor H
Puy, C., Pang, J., Reitsma, E. E., Lorentz, C. U., Tucker, E. I., Gailani, D., Gruber, A., Lupu, F. & McCarty, O. J. T., Apr 15 2021, In: Journal of Immunology. 206, 8, p. 1784-1792 9 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Development of Coagulation Factor XII Antibodies for Inhibiting Vascular Device-Related Thrombosis
Kohs, T. C. L., Lorentz, C. U., Johnson, J., Puy, C., Olson, S. R., Shatzel, J. J., Gailani, D., Hinds, M. T., Tucker, E. I., Gruber, A., McCarty, O. J. T. & Wallisch, M., Apr 2021, In: Cellular and Molecular Bioengineering. 14, 2, p. 161-175 15 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Droplet Microfluidics with Reagent Micromixing for Investigating Intrinsic Platelet Functionality
Jongen, M. S. A., Holloway, P. M., Lane, S. I. R., Englyst, N. A., McCarty, O. J. T. & West, J., Jun 2021, In: Cellular and Molecular Bioengineering. 14, 3, p. 223-230 8 p.Research output: Contribution to journal › Article › peer-review
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Erratum: Prediction of mild cognitive impairment using movement complexity (IEEE Journal of Biomedical and Health Informatics (2021) 25:1 (227-236) DOI: 10.1109/JBHI.2020.2985907)
Khan, T. & Jacobs, P., Aug 2021, In: IEEE journal of biomedical and health informatics. 25, 8, p. 3252 1 p., 9508204.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Erratum: Computational Estimation of Microsecond to Second Atomistic Folding Times (Journal of the American Chemical Society (2019) 141:16 (6519-6526) DOI: 10.1021/jacs.8b10735)
Adhikari, U., Mostofian, B., Copperman, J., Subramanian, S. R., Petersen, A. A. & Zuckerman, D. M., May 19 2021, In: Journal of the American Chemical Society. 143, 19, p. 7588 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Erratum: Investigating β-lactam drug targets in mycobacterium tuberculosis using chemical probes (ACS Infectious Diseases (2021) 7:2 (461-470) DOI: 10.1021/acsinfecdis.0c00809)
Levine, S. & Beatty, K., Apr 9 2021, In: ACS Infectious Diseases. 7, 4, p. 937 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Erythrocytosis and thromboembolic events in transgender individuals receiving gender-affirming testosterone
Oakes, M., Arastu, A., Kato, C., Somers, J., Holly, H. D., Elstrott, B. K., Dy, G. W., Kohs, T. C. L., Patel, R. R., McCarty, O. J. T., DeLoughery, T. G., Milano, C., Raghunathan, V. & Shatzel, J. J., Nov 2021, In: Thrombosis research. 207, p. 96-98 3 p.Research output: Contribution to journal › Letter › peer-review
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Extending the performance capabilities of isoSTED
Boehm, U. & Galbraith, C. G., Aug 17 2021, In: Biophysical Journal. 120, 16, p. 3237-3239 3 p.Research output: Contribution to journal › Article › peer-review
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Factor XII plays a pathogenic role in organ failure and death in baboons challenged with Staphylococcus aureus
Silasi, R., Keshari, R. S., Regmi, G., Lupu, C., Georgescu, C., Simmons, J. H., Wallisch, M., Kohs, T. C. L., Shatzel, J. J., Olson, S. R., Lorentz, C. U., Puy, C., Tucker, E. I., Gailani, D., Strickland, S., Gruber, A., McCarty, O. J. T. & Lupu, F., Jul 15 2021, In: Blood. 138, 2, p. 178-189 12 p.Research output: Contribution to journal › Article › peer-review
3 Scopus citations -
Fetal blood flow and genetic mutations in conotruncal congenital heart disease
Dyer, L. A. & Rugonyi, S., Aug 2021, In: Journal of Cardiovascular Development and Disease. 8, 8, 90.Research output: Contribution to journal › Review article › peer-review
Open Access -
Free From Falls education and exercise program for reducing falls in people with multiple sclerosis: A randomized controlled trial
Cameron, M., Hildebrand, A., Hugos, C. L., Judd, G. I., McMillan, G. & Jacobs, P., 2021, (Accepted/In press) In: Multiple Sclerosis Journal.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine
Gu, Q., Kumar, A., Bray, S., Creason, A., Khanteymoori, A., Jalili, V., Grüning, B. & Goecks, J., Jun 2021, In: PLoS computational biology. 17, 6, 1009014.Research output: Contribution to journal › Article › peer-review
Open Access -
Genomic alterations during the in situ to invasive ductal breast carcinoma transition shaped by the immune system
Trinh, A., Gil Del Alcazar, C. R., Shukla, S. A., Chin, K., Chang, Y. H., Thibault, G., Eng, J., Jovanovic, B., Aldaz, C. M., Park, S. Y., Jeong, J., Wu, C., Gray, J. & Polyak, K., Apr 2021, In: Molecular Cancer Research. 19, 4, p. 623-635 13 p.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Glucose management for exercise using continuous glucose monitoring: should sex and prandial state be additional considerations? Reply to Yardley JE and Sigal RJ [letter]
Moser, O., Riddell, M. C., Eckstein, M. L., Adolfsson, P., Rabasa-Lhoret, R., van den Boom, L., Gillard, P., Nørgaard, K., Oliver, N. S., Zaharieva, D. P., Battelino, T., de Beaufort, C., Bergenstal, R. M., Buckingham, B., Cengiz, E., Deeb, A., Heise, T., Heller, S., Kowalski, A. J., Leelarathna, L. & 10 others, , Apr 2021, In: Diabetologia. 64, 4, p. 935-938 4 p.Research output: Contribution to journal › Letter › peer-review
Open Access1 Scopus citations -
Heavy menstrual bleeding in women on oral anticoagulants
Samuelson Bannow, B. T., Chi, V., Sochacki, P., McCarty, O. J. T., Baldwin, M. K. & Edelman, A. B., Jan 2021, In: Thrombosis research. 197, p. 114-119 6 p.Research output: Contribution to journal › Article › peer-review
4 Scopus citations -
Heparin Resistance Is Common in Patients Undergoing Extracorporeal Membrane Oxygenation but Is Not Associated with Worse Clinical Outcomes
Raghunathan, V., Liu, P., Kohs, T. C. L., Amirsoltani, R., Oakes, M., McCarty, O. J. T., Olson, S. R., Zonies, D. & Shatzel, J. J., 2021, (Accepted/In press) In: ASAIO Journal. p. 899-906 8 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data
Sun, D., Guan, X., Moran, A. E., Wu, L. Y., Qian, D. Z., Schedin, P., Dai, M. S., Danilov, A., Alumkal, J., Adey, A. C., Spellman, P. T. & Xia, Z., 2021, (Accepted/In press) In: Nature biotechnology.Research output: Contribution to journal › Article › peer-review
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Incorporating Glucose Variability into Glucose Forecasting Accuracy Assessment Using the New Glucose Variability Impact Index and the Prediction Consistency Index: An LSTM Case Example
Mosquera-Lopez, C. & Jacobs, P. G., 2021, (Accepted/In press) In: Journal of Diabetes Science and Technology.Research output: Contribution to journal › Article › peer-review
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Innovation, entrepreneurship, promotion, and tenure
Carter, R. G., Mundorff, K., Risien, J., Bouwma-Gearhart, J., Bratsch-Prince, D., Brown, S. A., Campbell, A. L., Hartman, J. C., Hasemann, C. A., Hollenbeck, P. J., Lupiani, B., McCarty, O. J. T., McClure, I. D., Mealey, K., Mimura, C., Romero, A. J., Sztajn, P. & van Egeren, L., Sep 17 2021, In: Science. 373, 6561, p. 1312-1314 3 p.Research output: Contribution to journal › Article › peer-review
Open Access -
In Situ Tumor Vaccination with Nanoparticle Co-Delivering CpG and STAT3 siRNA to Effectively Induce Whole-Body Antitumor Immune Response
Ngamcherdtrakul, W., Reda, M., Nelson, M. A., Wang, R., Zaidan, H. Y., Bejan, D. S., Hoang, N. H., Lane, R. S., Luoh, S. W., Leachman, S. A., Mills, G. B., Gray, J. W., Lund, A. W. & Yantasee, W., Aug 5 2021, In: Advanced Materials. 33, 31, 2100628.Research output: Contribution to journal › Article › peer-review
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Interpretation of cancer mutations using a multiscale map of protein systems
Zheng, F., Kelly, M. R., Ramms, D. J., Heintschel, M. L., Tao, K., Tutuncuoglu, B., Lee, J. J., Ono, K., Foussard, H., Chen, M., Herrington, K. A., Silva, E., Liu, S. N., Chen, J., Churas, C., Wilson, N., Kratz, A., Pillich, R. T., Patel, D. N., Park, J. & 12 others, , Oct 1 2021, In: Science. 374, 6563, abf3067.Research output: Contribution to journal › Review article › peer-review
2 Scopus citations -
Intraoperative molecular imaging clinical trials: A review of 2020 conference proceedings
Azari, F., Kennedy, G., Bernstein, E., Hadjipanayis, C., Vahrmeijer, A. L., Smith, B. L., Rosenthal, E., Sumer, B., Tian, J., Henderson, E. R., Lee, A., Nguyen, Q., Gibbs, S. L., Pogue, B. W., Orringer, D. A., Charalampaki, P., Martin, L. W., Tanyi, J. L., Kenneth Lee, M., Lee, J. Y. K. & 1 others, , May 1 2021, In: Journal of biomedical optics. 26, 5, 050901.Research output: Contribution to journal › Review article › peer-review
Open Access2 Scopus citations -
Janus kinase inhibitors ruxolitinib and baricitinib impair glycoprotein-VI mediated platelet function
Parra-Izquierdo, I., Melrose, A. R., Pang, J., Lakshmanan, H. H. S., Reitsma, S. E., Vavilapalli, S. H., Larson, M. K., Shatzel, J. J., McCarty, O. J. T. & Aslan, J. E., 2021, (Accepted/In press) In: Platelets.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Leukocyte heterogeneity in pancreatic ductal adenocarcinoma: Phenotypic and spatial features associated with clinical outcome
Liudahl, S. M., Betts, C. B., Sivagnanam, S., Morales-Oyarvide, V., Silva, A. D., Yuan, C., Hwang, S., Grossblatt-Wait, A., Leis, K. R., Larson, W., Lavoie, M. B., Robinson, P., Costa, A. D., Väyrynen, S. A., Clancy, T. E., Rubinson, D. A., Link, J., Keith, D., Horton, W., Tempero, M. A. & 10 others, , Aug 2021, In: Cancer discovery. 11, 8, p. 2014-2031 18 p.Research output: Contribution to journal › Article › peer-review
9 Scopus citations -
More Time in Glucose Range during Exercise Days than Sedentary Days in Adults Living with Type 1 Diabetes
Riddell, M. C., Li, Z., Beck, R. W., Gal, R. L., Jacobs, P. G., Castle, J. R., Gillingham, M. B., Clements, M., Patton, S. R., Dassau, E., Doyle, F. J., Martin, C. K., Calhoun, P. & Rickels, M. R., May 2021, In: Diabetes Technology and Therapeutics. 23, 5, p. 376-383 8 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations