Research Output per year
Research Output 1978 2019
- 1 - 50 out of 1,148 results
- Publication Year, Title (descending)
2019
3D-Imaging of Whole Neuronal and Vascular Networks of the Human Dental Pulp via CLARITY and Light Sheet Microscopy
França, C. M., Riggers, R., Muschler, J., Widbiller, M., Lococo, P. M., Diogenes, A. & Bertassoni, L., Dec 1 2019, In : Scientific Reports. 9, 1, 10860.Research output: Contribution to journal › Article
Open Access
Dental Pulp
Acrylamide
Hydrogel
Blood Vessels
Microscopy
Adaptive tuning of basal and bolus insulin to reduce postprandial hypoglycemia in a hybrid artificial pancreas
Resalat, N., El Youssef, J., Reddy, R., Castle, J. & Jacobs, P., Aug 1 2019, In : Journal of Process Control. 80, p. 247-254 8 p.Research output: Contribution to journal › Article
Insulin
Adaptive Learning
Tuning
Diabetes
Medical problems
2
Citations
(Scopus)
A mechanism for hereditary angioedema with normal C1 inhibitor: an inhibitory regulatory role for the factor XII heavy chain
Ivanov, I., Matafonov, A., Sun, M. F., Mohammed, B. M., Cheng, Q., Dickeson, S. K., Kundu, S., Verhamme, I. M., Gruber, A., McCrae, K. & Gailani, D., Mar 7 2019, In : Blood. 133, 10, p. 1152-1163 12 p.Research output: Contribution to journal › Article
Hereditary Angioedemas
Factor XII
Prekallikrein
Kallikreins
Chemical activation
A non-circulating pool of factor XI associated with glycosaminoglycans in mice
Mohammed, B. M., Cheng, Q., Matafonov, A., Verhamme, I. M., Emsley, J., McCrae, K. R., McCarty, O., Gruber, A. & Gailani, D., Jan 1 2019, In : Journal of Thrombosis and Haemostasis.Research output: Contribution to journal › Article
Factor XI
Glycosaminoglycans
Blood Vessels
Prekallikrein
Heparin
2
Citations
(Scopus)
Antithrombotic Strategies After Bioprosthetic Aortic Valve Replacement: A Systematic Review
Papak, J., Chiovaro, J., Noelck, N., Healy, L. D., Freeman, M., Quin, J. A., Paynter, R., Low, A., Kondo, K., McCarty, O. & Kansagara, D., Jan 1 2019, In : Annals of Thoracic Surgery.Research output: Contribution to journal › Review article
Aortic Valve
Aspirin
Warfarin
Hemorrhage
Mortality
A prospective prediction tool for understanding Crimean–Congo haemorrhagic fever dynamics in Turkey
Ak, Ergönül & Gonen, M., Jan 1 2019, In : Clinical Microbiology and Infection.Research output: Contribution to journal › Article
Turkey
Fever
Climate
Emerging Communicable Diseases
Ticks
Assessment of human pancreas cancer tissue and precursor lesions via a fluorophore with inherent PDAC selectivity
Munhenzva, I. R., Barth, C. W., Sibrian-Vazquez, M., Wang, L. G., Escobedo, J. O., Gibbs, S. & Strongin, R. M., Jan 1 2019, In : Methods.Research output: Contribution to journal › Article
Fluorophores
Pancreatic Neoplasms
Adenocarcinoma
Tissue
Ducts
Assessment of neonatal, cord, and adult platelet granule trafficking and secretion
Ngo, A. T. P., Sheriff, J., Rocheleau, A. D., Bucher, M., Jones, K. R., Sepp, A. L. I., Malone, L. E., Zigomalas, A., Maloyan, A., Bahou, W. F., Bluestein, D., McCarty, O. & Haley, K., Jan 1 2019, In : Platelets.Research output: Contribution to journal › Article
Blood Platelets
Thrombin
Adenosine Diphosphate
Fetal Blood
PAR-1 Receptor
A statistical virtual patient population for the glucoregulatory system in type 1 diabetes with integrated exercise model
Resalat, N., El Youssef, J., Tyler, N., Castle, J. & Jacobs, P., Jan 1 2019, In : PloS one. 14, 7, e0217301.Research output: Contribution to journal › Article
Open Access
insulin-dependent diabetes mellitus
Medical problems
Type 1 Diabetes Mellitus
exercise
Hormones
BET bromodomain inhibition blocks the function of a critical AR-independent master regulator network in lethal prostate cancer
Coleman, D. J., Gao, L., King, C. J., Schwartzman, J., Urrutia, J., Sehrawat, A., Tayou, J., Balter, A., Burchard, J., Chiotti, K. E., Derrick, D. S., Sun, D., Xia, Z., Heiser, L. & Alumkal, J., Jan 1 2019, In : Oncogene.Research output: Contribution to journal › Article
Androgen Receptors
Castration
Prostatic Neoplasms
RNA Sequence Analysis
Neoplasms
2
Citations
(Scopus)
Biomimetic modification of poly(vinyl alcohol): Encouraging endothelialization and preventing thrombosis with antiplatelet monotherapy
Anderson, D. E. J., Truong, K. P., Hagen, M. W., Yim, E. K. F. & Hinds, M., Jan 1 2019, (Accepted/In press) In : Acta Biomaterialia.Research output: Contribution to journal › Article
Biomimetics
Platelets
Thrombosis
Alcohols
Blood Platelets
1
Citation
(Scopus)
Computational Estimation of Microsecond to Second Atomistic Folding Times
Adhikari, U., Mostofian, B., Copperman, J., Subramanian, S. R., Petersen, A. A. & Zuckerman, D., Apr 24 2019, In : Journal of the American Chemical Society. 141, 16, p. 6519-6526 8 p.Research output: Contribution to journal › Article
Molecular Dynamics Simulation
Viscosity
Proteins
Molecular dynamics
Uncertainty
1
Citation
(Scopus)
Contact Activation Inhibitor and Factor XI Antibody, AB023, Produces Safe, Dose-Dependent Anticoagulation in a Phase 1 First-In-Human Trial
Lorentz, C. U., Verbout, N. G., Wallisch, M., Hagen, M. W., Shatzel, J. J., Olson, S. R., Puy, C., Hinds, M., McCarty, O., Gailani, D., Gruber, A. & Tucker, E., Apr 1 2019, In : Arteriosclerosis, thrombosis, and vascular biology. 39, 4, p. 799-809 11 p.Research output: Contribution to journal › Article
Open Access
Factor XI
Antibodies
Thrombosis
Hemostasis
Primates
Contact system sends defensins to the rescue
Healy, L. D. & McCarty, O., Jan 31 2019, In : Blood. 133, 5, p. 385-386 2 p.Research output: Contribution to journal › Review article
Defensins
Fibrin
Factor XIIa
Kallikreins
Fibrinolysis
Correlating thrombus constituents of surface-modified vascular graft materials to luminal volume using microct to better quantify clinical functionality
Anderson, D. E. J., Gupta, A. & Hinds, M., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
X-Ray Microtomography
Biocompatible Materials
Platelets
Fibrin
Grafts
Diagnostic performance of receptor-specific surgical specimen staining correlates with receptor expression level
Schaefer, J. M., Barth, C. W., Davis, S. C. & Gibbs, S., Feb 1 2019, In : Journal of biomedical optics. 24, 2, p. 1-9 9 p.Research output: Contribution to journal › Article
staining
margins
Imaging techniques
Coloring Agents
Contrast Media
Endothelial PAI-1 (Plasminogen Activator Inhibitor-1) Blocks the Intrinsic Pathway of Coagulation, Inducing the Clearance and Degradation of FXIa (Activated Factor XI)
Puy, C., Ngo, A. T. P., Pang, J., Keshari, R. S., Hagen, M. W., Hinds, M., Gailani, D., Gruber, A., Lupu, F. & McCarty, O., Jul 1 2019, In : Arteriosclerosis, thrombosis, and vascular biology. 39, 7, p. 1390-1401 12 p.Research output: Contribution to journal › Article
Open Access
Factor XIa
Plasminogen Inactivators
Plasminogen Activator Inhibitor 1
Endothelial Cells
Kallikreins
Erratum: Modeling subdiffusive light scattering by incorporating the tissue phase function and detector numerical aperture (Journal of Biomedical Optics (2017) 22:5 (050501) DOI: 10.1117/1.JBO.22.5.050501)
Post, A. L., Jacques, S., Sterenborg, H. J. C. M., Faber, D. J. & Van Leeuwen, T. G., Jun 30 2019, In : Journal of biomedical optics. 24, 6, 069801.Research output: Contribution to journal › Comment/debate
Open Access
numerical aperture
Light scattering
light scattering
optics
Tissue
Erratum: Correction: FGF2-FGFR1 signaling regulates release of leukemia-protective exosomes from bone marrow stromal cells (eLife (2019) 8 PII: e47174)
Javidi-Sharifi, N., Martinez, J., English, I., Joshi, S. K., Scopim-Ribeiro, R., Viola, S. K., Edwards, D. K., Agarwal, A., Lopez, C., Jorgens, D., Tyner, J., Druker, B. & Traer, E., Mar 29 2019, In : eLife. 8Research output: Contribution to journal › Comment/debate
Open Access
Exosomes
Fibroblast Growth Factor 2
Mesenchymal Stromal Cells
Medicine
Bone
FGF2-FGFR1 signaling regulates release of Leukemia-Protective exosomes from bone marrow stromal cells
Javidi-Sharifi, N., Martinez, J., English, I., Joshi, S. K., Scopim-Ribiero, R., Edwards, D. K., Agarwal, A., Lopez, C., Jorgens, D., Tyner, J., Druker, B. & Traer, E., Feb 5 2019, In : eLife. 8Research output: Contribution to journal › Article
Open Access
Exosomes
Fibroblast Growth Factor 2
Mesenchymal Stromal Cells
Protein-Tyrosine Kinases
Bone
GRB7 dependent proliferation of basal-like, HER-2 positive human breast cancer cell lines is mediated in part by HER-1 signaling
Luoh, S-W., Wagoner, W., Wang, X., Hu, Z., Lai, X., Chin, K-Y., Sears, R. & Ramsey, E., Jan 1 2019, In : Molecular Carcinogenesis.Research output: Contribution to journal › Article
Breast Neoplasms
Cell Line
Small Interfering RNA
Growth
GRB7 Adaptor Protein
High-dimensional multiplexed immunohistochemical characterization of immune contexture in human cancers
Banik, G., Betts, C. B., Liudahl, S. M., Sivagnanam, S., Kawashima, R., Cotechini, T., Larson, W., Goecks, J., Pai, S. I., Clayburgh, D., Tsujikawa, T. & Coussens, L. M., Jan 1 2019, Methods in Enzymology. Academic Press Inc., (Methods in Enzymology).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Tumors
Neoplasms
Tumor Microenvironment
Cells
Immunohistochemistry
Identification, Quantification, and System Analysis of Protein N-ε Lysine Methylation in Anucleate Blood Platelets
Rocheleau, A. D., Melrose, A. R., Cunliffe, J. M., Klimek, J., Babur, O., Tassi Yunga, S., Ngo, A. T. P., Pang, J., David, L., McCarty, O. & Aslan, J., Jan 1 2019, In : Proteomics. 1900001.Research output: Contribution to journal › Article
Methylation
Platelets
Systems Analysis
Lysine
Identification (control systems)
1
Citation
(Scopus)
Inhibition of contact-mediated activation of factor XI protects baboons against S aureus-induced organ damage and death
Silasi, R., Keshari, R. S., Lupu, C., Van Rensburg, W. J., Chaaban, H., Regmi, G., Shamanaev, A., Shatzel, J. J., Puy, C., Lorentz, C. U., Tucker, E., Gailani, D., Gruber, A., McCarty, O. & Lupu, F., Feb 26 2019, In : Blood advances. 3, 4, p. 658-669 12 p.Research output: Contribution to journal › Article
Open Access
Factor XI
Contact Inhibition
Papio
Sepsis
Disseminated Intravascular Coagulation
Integrated Analysis of TP53 Gene and Pathway Alterations in The Cancer Genome Atlas
The Cancer Genome Atlas Network, Jul 30 2019, In : Cell Reports. 28, 5, p. 1370-1384.e5Research output: Contribution to journal › Article
Open Access
Atlases
p53 Genes
Tumors
Genes
Genome
Lanthanide-Loaded Nanoparticles as Potential Fluorescent and Mass Probes for High-Content Protein Analysis
Ngamcherdtrakul, W., Sangvanich, T., Goodyear, S., Reda, M., Gu, S., Castro, D. J., Punnakitikashem, P. & Yantasee, W., Mar 1 2019, In : Bioengineering. 6, 1, 23.Research output: Contribution to journal › Article
Open Access
Lanthanoid Series Elements
Rare earth elements
Antibodies
Nanoparticles
Proteins
Luminal plasma treatment for small diameter polyvinyl alcohol tubular scaffolds
Pohan, G., Chevallier, P., Anderson, D. E. J., Tse, J. W., Yao, Y., Hagen, M. W., Mantovani, D., Hinds, M. & Yim, E. K. F., Jan 1 2019, In : Frontiers in Bioengineering and Biotechnology. 7, MAY, 117.Research output: Contribution to journal › Article
Polyvinyl Alcohol
Polyvinyl alcohols
Scaffolds
Grafts
Blood Vessels
1
Citation
(Scopus)
Maintenance of MYC expression promotes de novo resistance to BET bromodomain inhibition in castration-resistant prostate cancer
Coleman, D. J., Gao, L., Schwartzman, J., Korkola, J., Sampson, D., Derrick, D. S., Urrutia, J., Balter, A., Burchard, J., King, C. J., Chiotti, K. E., Heiser, L. & Alumkal, J., Dec 1 2019, In : Scientific Reports. 9, 1, 3823.Research output: Contribution to journal › Article
Open Access
Castration
Prostatic Neoplasms
Maintenance
Androgen Receptors
Cell Line
Methodology for Detecting and Tracking Brain-Derived Neurotrophic Factor Complexes in Neurons Using Single Quantum Dots
Vermehren-Schmaedick, A., Jacob, T. & Vu, T. T., Jan 1 2019, Neuromethods. Humana Press Inc., p. 105-118 14 p. (Neuromethods; vol. 143).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Quantum Dots
Brain-Derived Neurotrophic Factor
Semiconductor quantum dots
Neurons
trkB Receptor
Middle-way flexible docking: Pose prediction using mixed-resolution Monte Carlo in estrogen receptor α
Spiriti, J., Subramanian, S. R., Palli, R., Wu, M. & Zuckerman, D., Apr 1 2019, In : PloS one. 14, 4, e0215694.Research output: Contribution to journal › Article
Open Access
Estrogen Receptors
prediction
Proteins
proteins
Ligands
Modeling the effect of blood vessel bifurcation ratio on occlusive thrombus formation
Lakshmanan, H. H. S., Shatzel, J. J., Olson, S. R., McCarty, O. & Maddala, J., Jan 1 2019, In : Computer Methods in Biomechanics and Biomedical Engineering.Research output: Contribution to journal › Article
Bifurcation (mathematics)
Blood vessels
Microfluidics
Shear deformation
Blood
3
Citations
(Scopus)
Modeling Tumor Phenotypes In Vitro with Three-Dimensional Bioprinting
Langer, E. M., Allen-Petersen, B. L., King, S. M., Kendsersky, N. D., Turnidge, M. A., Kuziel, G. M., Riggers, R., Samatham, R., Amery, T. S., Jacques, S., Sheppard, B., Korkola, J., Muschler, J., Thibault, G., Chang, Y. H., Gray, J., Presnell, S. C., Nguyen, D. G. & Sears, R., Jan 15 2019, In : Cell Reports. 26, 3, p. 608-623.e6Research output: Contribution to journal › Article
Bioprinting
Tumors
Tissue
Phenotype
Scaffolds
1
Citation
(Scopus)
Nudt21 regulates the alternative polyadenylation of Pak1 and is predictive in the prognosis of glioblastoma patients
Chu, Y., Elrod, N., Wang, C., Li, L., Chen, T., Routh, A., Xia, Z., Li, W., Wagner, E. J. & Ji, P., Jan 1 2019, In : Oncogene.Research output: Contribution to journal › Article
Polyadenylation
Glioblastoma
3' Untranslated Regions
Glioma
Genes
Optical properties of living corals determined with diffuse reflectance spectroscopy
Jacques, S., Wangpraseurt, D. & Kühl, M., Jan 1 2019, In : Frontiers in Marine Science. 6, JUL, 472.Research output: Contribution to journal › Article
Open Access
optical properties
optical property
corals
coral
reflectance
Prediction of Hypoglycemia During Aerobic Exercise in Adults With Type 1 Diabetes
Reddy, R., Resalat, N., Wilson, L. M., Castle, J., El Youssef, J. & Jacobs, P., Jan 1 2019, In : Journal of diabetes science and technology.Research output: Contribution to journal › Article
Medical problems
Type 1 Diabetes Mellitus
Hypoglycemia
Exercise
Heart Rate
Prevention of acute venous stent-induced thrombosis using inhibition of fxii
Nguyen, K. P., Wallisch, M., Johnson, J., Gruber, A. & Hinds, M., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Factor XII
Stents
Venous Thrombosis
Thrombosis
Blood
Protein dynamics analysis reveals that missense mutations in cancer-related genes appear frequently on hinge-neighboring residues
Sayılgan, J. F., Haliloğlu, T. & Gonen, M., Jan 1 2019, In : Proteins: Structure, Function and Bioinformatics.Research output: Contribution to journal › Article
Neoplasm Genes
Missense Mutation
Hinges
Dynamic analysis
Genes
Removal of a gadolinium based contrast agent by a novel sorbent hemoperfusion in a chronic kidney disease (CKD) rodent model
Ngamcherdtrakul, W., Morry, J., Sangvanich, T., Reda, M., Bejan, D. S., Fryxell, G. E. & Yantasee, W., Dec 1 2019, In : Scientific Reports. 9, 1, 709.Research output: Contribution to journal › Article
Hemoperfusion
Gadolinium
Chronic Renal Insufficiency
Contrast Media
Rodentia
Robust Cell Detection and Segmentation for Image Cytometry Reveal Th17 Cell Heterogeneity
Tsujikawa, T., Thibault, G., Azimi, V., Sivagnanam, S., Banik, G., Means, C., Kawashima, R., Clayburgh, D., Gray, J., Coussens, L. & Chang, Y. H., Jan 1 2019, In : Cytometry Part A.Research output: Contribution to journal › Article
Image Cytometry
Th17 Cells
Papillomaviridae
Immunohistochemistry
Biomarkers
2
Citations
(Scopus)
Selective capture of radionuclides (U, Pu, Th, Am and Co) using functional nanoporous sorbents
Yantasee, W., Fryxell, G. E., Pattamakomsan, K., Sangvanich, T., Wiacek, R. J., Busche, B., Addleman, R. S., Timchalk, C., Ngamcherdtrakul, W. & Siriwon, N., Mar 15 2019, In : Journal of Hazardous Materials. 366, p. 677-683 7 p.Research output: Contribution to journal › Article
Organophosphonates
Seawater
Sorbents
Actinoid Series Elements
Radioisotopes
Sensory re-weighting for postural control in Parkinson’s disease
Feller, K. J., Peterka, R. B. & Horak, F., Feb 1 2019, In : Frontiers in Human Neuroscience. 13, 126.Research output: Contribution to journal › Article
Open Access
Parkinson Disease
Aptitude
Weights and Measures
Proprioception
Behavior Control
3
Citations
(Scopus)
Serotonin transporter–ibogaine complexes illuminate mechanisms of inhibition and transport
Coleman, J. A., Yang, D., Zhao, Z., Wen, P. C., Yoshioka, C., Tajkhorshid, E. & Gouaux, E., Jan 1 2019, In : Nature.Research output: Contribution to journal › Letter
Ibogaine
Serotonin Plasma Membrane Transport Proteins
Plasma Membrane Neurotransmitter Transport Proteins
Serotonin
Neurotransmitter Agents
Signal removal methods for highly multiplexed immunofluorescent staining using antibody conjugated oligonucleotides
McMahon, N., Jones, J., Eng, J., Kwon, S., Chang, Y. H., Thibault, G., Chin, K-Y., Nederlof, M., Gray, J. & Gibbs, S., Jan 1 2019, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XVII. Farkas, D. L., Tarnok, A. & Leary, J. F. (eds.). SPIE, 108810X. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10881).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
oligonucleotides
Oligonucleotides
staining
antibodies
Antibodies
Static spatial growth restriction micropatterning of endothelial colony forming cells influences their morphology and gene expression
Hagen, M. W. & Hinds, M., Jun 1 2019, In : PloS one. 14, 6, e0218197.Research output: Contribution to journal › Article
Open Access
Gene expression
Endothelial cells
Gene Expression
Elongation
gene expression
1
Citation
(Scopus)
Statistical Uncertainty Analysis for Small-Sample, High Log-Variance Data: Cautions for Bootstrapping and Bayesian Bootstrapping
Mostofian, B. & Zuckerman, D., Jun 11 2019, In : Journal of Chemical Theory and Computation. 15, 6, p. 3499-3509 11 p.Research output: Contribution to journal › Article
Uncertainty analysis
statistical analysis
intervals
confidence
Rate constants
Structure of the gene therapy vector, adeno-associated virus with its cell receptor, AAVR
Meyer, N. L., Hu, G., Davulcu, O., Xie, Q., Noble, A. J., Yoshioka, C., Gingerich, D. S., Trzynka, A., David, L., Stagg, S. M. & Chapman, M., May 22 2019, In : eLife. 8Research output: Contribution to journal › Article
Open Access
Gene therapy
Dependovirus
Viruses
Genetic Therapy
Electron Microscope Tomography
Targeting mitochondria in cancer therapy could provide a basis for the selective anticancer activity
Rozanov, D., Cheltsov, A., Nilsen, A., Boniface, C., Forquer, I., Korkola, J., Gray, J., Tyner, J., Tognon, C. E., Mills, G. & Spellman, P., Mar 1 2019, In : PloS one. 14, 3, e0205623.Research output: Contribution to journal › Article
Open Access
Mitochondria
Assays
mitochondria
therapeutics
neoplasms
The Potential and Pitfalls of Crowdsourced Algorithm Development in Radiation Oncology
Elhalawani, H., Fuller, C. D. & Thompson, R., Jan 1 2019, In : JAMA Oncology.Research output: Contribution to journal › Comment/debate
Radiation Oncology
Therapeutic Clues from an Integrated Omic Assessment of East Asian Triple Negative Breast Cancers
Heiser, L., Mills, G. & Gray, J., Mar 18 2019, In : Cancer Cell. 35, 3, p. 341-343 3 p.Research output: Contribution to journal › Short survey
Triple Negative Breast Neoplasms
Decision Trees
Population
Therapeutics
Neoplasms
The role of coagulation and platelets in colon cancer-associated thrombosis
Mitrugno, A., Tassi Yunga, S., Sylman, J. L., Zilberman-Rudenko, J., Shirai, T., Hebert, J. F., Kayton, R., Zhang, Y., Nan, X., Shatzel, J. J., Esener, S., Duvernay, M. T., Hamm, H. E., Gruber, A., Williams, C. D., Takata, Y., Armstrong, R., Morgan, T. & McCarty, O., Feb 1 2019, In : American journal of physiology. Cell physiology. 316, 2, p. C264-C273Research output: Contribution to journal › Article
Colonic Neoplasms
Thrombosis
Blood Platelets
Neoplasms
Cell Communication