Biomedical Engineering

Research output

Research output per year 1978 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023

• 1031 Article
• 220 Conference contribution
• 97 Conference article
• 82 Review article
• 129 More
  • 52 Comment/debate
  • 29 Chapter
  • 18 Letter
  • 16 Editorial
  • 8 Paper
  • 4 Short survey
  • 1 Book
  • 1 Foreword/postscript

Research output per year

Research output per year

Search results

• 2023

  #COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol

  Dommer, A., Casalino, L., Kearns, F., Rosenfeld, M., Wauer, N., Ahn, S. H., Russo, J., Oliveira, S., Morris, C., Bogetti, A., Trifan, A., Brace, A., Sztain, T., Clyde, A., Ma, H., Chennubhotla, C., Lee, H., Turilli, M., Khalid, S., Tamayo-Mendoza, T., & 32 othersWelborn, M., Christensen, A., Smith, D. G. A., Qiao, Z., Sirumalla, S. K., O’Connor, M., Manby, F., Anandkumar, A., Hardy, D., Phillips, J., Stern, A., Romero, J., Clark, D., Dorrell, M., Maiden, T., Huang, L., McCalpin, J., Woods, C., Gray, A., Williams, M., Barker, B., Rajapaksha, H., Pitts, R., Gibbs, T., Stone, J., Zuckerman, D. M., Mulholland, A. J., Miller, T., Jha, S., Ramanathan, A., Chong, L. & Amaro, R. E., Jan 2023, In: International Journal of High Performance Computing Applications. 37, 1, p. 28-44 17 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Aerosol 100%
  • Severe Acute Respiratory Syndrome 99%
  • Microscopy 94%
  • Aerosols 76%
  • Viruses 75%
  1 Scopus citations

• Fucoidan and topography modification improved in situ endothelialization on acellular synthetic vascular grafts

  Yao, Y., Zaw, A. M., Anderson, D. E. J., Jeong, Y. J., Kunihiro, J., Hinds, M. T. & Yim, E. K. F., Apr 2023, In: Bioactive Materials. 22, p. 535-550 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Fucoidan 100%
  • fucoidan 99%
  • Grafts 88%
  • Topography 75%
  • Endothelial cells 74%

• Pevonedistat, a Nedd8-activating enzyme inhibitor, in combination with ibrutinib in patients with relapsed/refractory B-cell non-Hodgkin lymphoma

  Torka, P., Kambhampati, S., Chen, L., Wang, X., Chen, C., Vuong, D., Qin, H., Muir, A., Orand, K., Borja, I., Lynne Smith, D., Herrera, A. F., Spurgeon, S. E. F., Park, B., Lewis, L. D., Hernandez-Ilizaliturri, F., Xia, Z. & Danilov, A. V., Dec 2023, In: Blood cancer journal. 13, 1, 9.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • pevonedistat 100%
  • PCI 32765 84%
  • Enzyme Inhibitors 65%
  • B-Cell Lymphoma 59%
  • Non-Hodgkin's Lymphoma 53%

• Single Cell Spatial Biology for Precision Cancer Medicine

  Gentles, A. J., Nirmal, A. J., Heiser, L. M., Lundberg, E. & Newman, A. M., 2023, In: Pacific Symposium on Biocomputing. 2023, p. 549-553 5 p.

  Research output: Contribution to journal › Conference article › peer-review

  Open Access

  • Precision Medicine 100%
  • Cell Biology 80%
  • Ecosystem 34%
  • Tumor Microenvironment 32%
  • Neoplasms 29%

• The Applications and Challenges of the Development of In Vitro Tumor Microenvironment Chips

  Johnson, A., Reimer, S., Childres, R., Cupp, G., Kohs, T. C. L., McCarty, O. J. T. & Kang, Y., Feb 2023, In: Cellular and Molecular Bioengineering. 16, 1, p. 3-21 19 p.

  Research output: Contribution to journal › Review article › peer-review

  • Chip 100%
  • Tumor 83%
  • Tumor Microenvironment 81%
  • Tumors 80%
  • In Vitro Techniques 34%

• Weighted ensemble: Recent mathematical developments

  Aristoff, D., Copperman, J., Simpson, G., Webber, R. J. & Zuckerman, D. M., Jan 7 2023, In: Journal of Chemical Physics. 158, 1, 014108.

  Research output: Contribution to journal › Article › peer-review

  • Statistical Ensemble 100%
  • trajectories 79%
  • biochemistry 66%
  • hardware 47%
  • Biochemistry 45%
• 2022

  A Cancer Cell–Intrinsic GOT2–PPARδ Axis Suppresses Antitumor Immunity

  Abrego, J., Sanford-Crane, H., Oon, C., Xiao, X., Betts, C. B., Sun, D., Nagarajan, S., Diaz, L., Sandborg, H., Bhattacharyya, S., Xia, Z., Coussens, L. M., Tontonoz, P. & Sherman, M. H., Oct 1 2022, In: Cancer discovery. 12, 10, p. 2414-2433 20 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Aspartate Aminotransferases 100%
  • Immunity 80%
  • delta Opioid Receptor 62%
  • Peroxisomes 62%
  • Immune Evasion 62%
  3 Scopus citations

• A clinically relevant formulation for direct administration of nerve specific fluorophores to mitigate iatrogenic nerve injury

  Barth, C. W., Shah, V. M., Wang, L. G., Masillati, A. M., Al-Fatease, A., Husain Rizvi, S. Z., Antaris, A. L., Sorger, J., Rao, D. A., Alani, A. W. G. & Gibbs, S. L., May 2022, In: Biomaterials. 284, 121490.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Fluorophores 100%
  • Fluorescence 68%
  • Surgery 60%
  • Gels 41%
  • Tissue 33%
  1 Scopus citations

• A framework for multiplex imaging optimization and reproducible analysis

  Eng, J., Bucher, E., Hu, Z., Zheng, T., Gibbs, S. L., Chin, K. & Gray, J. W., Dec 2022, In: Communications Biology. 5, 1, 438.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Pipeline 100%
  • Fluorescent Antibody Technique 74%
  • image analysis 71%
  • Boidae 62%
  • fluorescent antibody technique 54%
  2 Scopus citations

• A lineage tree-based hidden Markov model quantifies cellular heterogeneity and plasticity

  Mohammadi, F., Visagan, S., Gross, S. M., Karginov, L., Lagarde, J. C., Heiser, L. M. & Meyer, A. S., Dec 2022, In: Communications Biology. 5, 1, 1258.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Cell Plasticity 100%
  • Plastic Property 86%
  • Heterogeneity 69%
  • plasticity 67%
  • cells 23%

• A multi-encoder variational autoencoder controls multiple transformational features in single-cell image analysis

  Ternes, L., Dane, M., Gross, S., Labrie, M., Mills, G., Gray, J., Heiser, L. & Chang, Y. H., Dec 2022, In: Communications Biology. 5, 1, 255.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Single-Cell Analysis 100%
  • Crystalline Texture 71%
  • image analysis 61%
  • Drug 39%
  • cells 23%
  3 Scopus citations

• A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses

  Gross, S. M., Dane, M. A., Smith, R. L., Devlin, K. L., McLean, I. C., Derrick, D. S., Mills, C. E., Subramanian, K., London, A. B., Torre, D., Evangelista, J. E., Clarke, D. J. B., Xie, Z., Erdem, C., Lyons, N., Natoli, T., Pessa, S., Lu, X., Mullahoo, J., Li, J., & 30 othersAdam, M., Wassie, B., Liu, M., Kilburn, D. F., Liby, T. A., Bucher, E., Sanchez-Aguila, C., Daily, K., Omberg, L., Wang, Y., Jacobson, C., Yapp, C., Chung, M., Vidovic, D., Lu, Y., Schurer, S., Lee, A., Pillai, A., Subramanian, A., Papanastasiou, M., Fraenkel, E., Feiler, H., Mills, G., Jaffe, J. D., Ma’ayan, A., Birtwistle, M. R., Sorger, P. K., Korkola, J., Gray, J. W. & Heiser, L., Dec 2022, In: Communications Biology. 5, 1, 1066.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • multiomics 100%
  • ligands 60%
  • computational methodology 58%
  • Datasets 52%
  • Ligands 46%

• A multiplex implantable microdevice assay identifies synergistic combinations of cancer immunotherapies and conventional drugs

  Tatarova, Z., Blumberg, D. C., Korkola, J. E., Heiser, L. M., Muschler, J. L., Schedin, P. J., Ahn, S. W., Mills, G. B., Coussens, L. M., Jonas, O. & Gray, J. W., Dec 2022, In: Nature biotechnology. 40, 12, p. 1823-1833 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Assays 100%
  • Venetoclax 91%
  • Panobinostat 88%
  • Tumors 87%
  • Immunotherapy 75%
  7 Scopus citations

• Androgen receptor activity in T cells limits checkpoint blockade efficacy

  Guan, X., Polesso, F., Wang, C., Sehrawat, A., Hawkins, R. M., Murray, S. E., Thomas, G. V., Caruso, B., Thompson, R. F., Wood, M. A., Hipfinger, C., Hammond, S. A., Graff, J. N., Xia, Z. & Moran, A. E., Jun 23 2022, In: Nature. 606, 7915, p. 791-796 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Androgen Receptors 100%
  • T-Lymphocytes 57%
  • Immunotherapy 27%
  • Neoplasms 24%
  • Androgens 14%
  42 Scopus citations

• An investigation into the in vivo performance of Changsha and rhodamine fluorophores

  Montaño, A. R., Wang, L. G., Masillati, A., Shams, N. A. & Gibbs, S. L., 2022, Molecular-Guided Surgery: Molecules, Devices, and Applications VIII. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 119430A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11943).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Fluorophores 100%
  • Indocyanine Green 85%
  • Rhodamines 82%
  • rhodamine 70%
  • nerves 67%

• An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer

  Johnson, B. E., Creason, A. L., Stommel, J. M., Keck, J. M., Parmar, S., Betts, C. B., Blucher, A., Boniface, C., Bucher, E., Burlingame, E., Camp, T., Chin, K., Eng, J., Estabrook, J., Feiler, H. S., Heskett, M. B., Hu, Z., Kolodzie, A., Kong, B. L., Labrie, M., & 26 othersLee, J., Leyshock, P., Mitri, S., Patterson, J., Riesterer, J. L., Sivagnanam, S., Somers, J., Sudar, D., Thibault, G., Weeder, B. R., Zheng, C., Nan, X., Thompson, R., Heiser, L. M., Spellman, P. T., Thomas, G., Demir, E., Chang, Y. H., Coussens, L. M., Guimaraes, A. R., Corless, C., Goecks, J., Bergan, R., Mitri, Z., Mills, G. B. & Gray, J. W., Feb 15 2022, In: Cell Reports Medicine. 3, 2, 100525.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Atlases 100%
  • Breast Neoplasms 59%
  • Resistance 58%
  • Biopsy 56%
  • Heterogeneity 42%
  7 Scopus citations

• A PDE Model of Breast Tumor Progression in MMTV-PyMT Mice

  Mirzaei, N. M., Tatarova, Z., Hao, W., Changizi, N., Asadpoure, A., Zervantonakis, I. K., Hu, Y., Chang, Y. H. & Shahriyari, L., May 2022, In: Journal of Personalized Medicine. 12, 5, 807.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Breast Neoplasms 100%
  • Neoplasms 31%
  • Songbirds 13%
  • T-Lymphocytes 12%
  • Adipocytes 9%
  3 Scopus citations

• Arbitrary-Length Analogs to de Bruijn Sequences

  Nellore, A. & Ward, R., Jun 1 2022, 33rd Annual Symposium on Combinatorial Pattern Matching, CPM 2022. Bannai, H. & Holub, J. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 9. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 223).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A scalable, open-source implementation of a large-scale mechanistic model for single cell proliferation and death signaling

  Erdem, C., Mutsuddy, A., Bensman, E. M., Dodd, W. B., Saint-Antoine, M. M., Bouhaddou, M., Blake, R. C., Gross, S. M., Heiser, L. M., Feltus, F. A. & Birtwistle, M. R., Dec 2022, In: Nature communications. 13, 1, 3555.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Pipeline 100%
  • scale models 98%
  • death 98%
  • Computing Methodologies 73%
  • Cloud Computing 73%

• Assessment of a Decision Support System for Adults with Type 1 Diabetes on Multiple Daily Insulin Injections

  Castle, J. R., Wilson, L. M., Tyler, N. S., Espinoza, A. Z., Mosquera-Lopez, C. M., Kushner, T., Young, G. M., Pinsonault, J., Dodier, R. H., Hilts, W. W., Oganessian, S. M., Branigan, D. L., Gabo, V. B., Eom, J. H., Ramsey, K., Youssef, J. E., Cafazzo, J. A., Winters-Stone, K. & Jacobs, P. G., Dec 1 2022, In: Diabetes Technology and Therapeutics. 24, 12, p. 892-897 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Type 1 Diabetes Mellitus 100%
  • Insulin 76%
  • Injections 64%
  • Long-Acting Insulin 33%
  • Short-Acting Insulin 33%

• Asxl1 deletion disrupts MYC and RNA polymerase II function in granulocyte progenitors

  Braun, T. P., Estabrook, J., Schonrock, Z., Curtiss, B. M., Darmusey, L., Macaraeg, J., Enright, T., Coblentz, C., Callahan, R., Yashar, W., Taherinasab, A., Mohammed, H., Coleman, D., Druker, B. J., Demir, E., Lusardi, T. A. & Maxson, J. E., 2022, (Accepted/In press) In: Leukemia.

  Research output: Contribution to journal › Article › peer-review

  • Comb and Wattles 100%
  • Granulocyte Precursor Cells 90%
  • RNA Polymerase II 80%
  • Myelopoiesis 24%
  • Histone Code 19%

• Author Correction: Genomic footprints of activated telomere maintenance mechanisms in cancer (Nature Communications, (2020), 11, 1, (733), 10.1038/s41467-019-13824-9)

  PCAWG Structural Variation Working Group & PCAWG Consortium, Dec 2022, In: Nature communications. 13, 1, 7574.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • telomeres 100%
  • genome 76%
  • document markup languages 70%
  • footprints 66%
  • Telomere 64%

• Author Correction: Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig (Nature Communications, (2020), 11, 1, (731), 10.1038/s41467-020-14352-7)

  PCAWG Evolution and Heterogeneity Working Group & PCAWG Consortium, Dec 2022, In: Nature communications. 13, 1, 7567.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • genome 100%
  • document markup languages 91%
  • mutations 89%
  • cancer 71%
  • Communication 69%

• Author Correction: Integrative pathway enrichment analysis of multivariate omics data (Nature Communications, (2020), 11, 1, (735), 10.1038/s41467-019-13983-9)

  PCAWG Drivers and Functional Interpretation Working Group & PCAWG Consortium, Dec 2022, In: Nature communications. 13, 1, 7570.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • genome 100%
  • document markup languages 91%
  • cancer 71%
  • Communication 69%
  • communication 63%

• Author Correction: Divergent mutational processes distinguish hypoxic and normoxic tumours (Nature Communications, (2020), 11, 1, (737), 10.1038/s41467-019-14052-x)

  PCAWG Consortium, Dec 2022, In: Nature communications. 13, 1, 7569.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • genome 100%
  • document markup languages 91%
  • tumors 73%
  • cancer 71%
  • Communication 69%

• Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes (Nature Communications, (2020), 11, 1, (729), 10.1038/s41467-020-14367-0)

  PCAWG Drivers and Functional Interpretation Working Group & PCAWG Consortium, Dec 2022, In: Nature communications. 13, 1, 7566.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

• Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns (Nature Communications, (2020), 11, 1, (728), 10.1038/s41467-019-13825-8)

  PCAWG Tumor Subtypes and Clinical Translation Working Group & PCAWG Consortium, Dec 2022, In: Nature communications. 13, 1, 7573.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Deep Learning 100%
  • genome 94%
  • passengers 93%
  • document markup languages 86%
  • mutations 84%

• Author Correction: Inferring structural variant cancer cell fraction (Nature Communications, (2020), 11, 1, (730), 10.1038/s41467-020-14351-8)

  PCAWG Evolution and Heterogeneity Working Group & PCAWG Consortium, Dec 2022, In: Nature communications. 13, 1, 7568.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • genome 100%
  • cancer 71%
  • Communication 69%
  • document markup languages 68%
  • communication 63%

• Author Correction: High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations (Nature Communications, (2020), 11, 1, (736), 10.1038/s41467-019-13885-w)

  PCAWG Transcriptome Working Group, PCAWG Structural Variation Working Group & PCAWG Consortium, Dec 2022, In: Nature communications. 13, 1, 7572.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • genome 100%
  • Gene Rearrangement 89%
  • genes 89%
  • cancer 71%
  • Communication 69%

• Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower (Nature Communications, (2020), 11, 1, (734), 10.1038/s41467-019-13929-1)

  PCAWG Drivers and Functional Interpretation Working Group & PCAWG Consortium, Dec 2022, In: Nature communications. 13, 1, 7571.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • impact tests 100%
  • genome 79%
  • cancer 71%
  • Communication 69%
  • communication 63%

• A Versatile Synthetic Pathway for Producing Mesostructured Plasmonic Nanostructures

  Kim, S., Palani, S., Civitci, F., Nan, X. & Ibsen, S., Nov 24 2022, In: Small. 18, 47, 2203940.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Plasmonic nanoparticles 100%
  • Plasmonics 74%
  • Nanostructures 62%
  • Carbon Quantum Dots 54%
  • Nanoparticles 45%
  1 Scopus citations

• Basic science research opportunities in thrombosis and hemostasis: Communication from the SSC of the ISTH

  Mutch, N. J., Walters, S., Gardiner, E. E., McCarty, O. J. T., De Meyer, S. F., Schroeder, V. & Meijers, J. C. M., Jun 2022, In: Journal of Thrombosis and Haemostasis. 20, 6, p. 1496-1506 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Hemostasis 100%
  • Thrombosis 77%
  • Advisory Committees 53%
  • Hemorrhage 21%
  • Rheology 20%
  1 Scopus citations

• Central sensorimotor integration assessment reveals deficits in standing balance control in people with chronic mild traumatic brain injury

  Campbell, K. R., King, L., Parrington, L., Fino, P. C., Antonellis, P. & Peterka, R. J., Oct 21 2022, In: Frontiers in Neurology. 13, 897454.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Brain Concussion 100%
  • Eye 32%
  • Cues 22%
  • Noise 12%
  • Rehabilitation 10%

• Chronic edible dosing of Δ9-tetrahydrocannabinol (THC) in nonhuman primates reduces systemic platelet activity and function

  Reitsma, S. E., Lakshmanan, H. H. S., Johnson, J., Pang, J., Parra-Izquierdo, I., Melrose, A. R., Choi, J., Anderson, D. E. J., Hinds, M. T., Stevens, J. F., Aslan, J. E., McCarty, O. J. T. & Lo, J. O., Mar 1 2022, In: American journal of physiology. Cell physiology. 322, 3, p. C370-C381

  Research output: Contribution to journal › Article › peer-review

  • Dronabinol 100%
  • Primates 75%
  • Blood Platelets 63%
  • Medical Marijuana 39%
  • Cannabinoid Receptors 34%

• Circulating Neoplastic-Immune Hybrid Cells Predict Metastatic Progression in Uveal Melanoma

  Parappilly, M. S., Chin, Y., Whalen, R. M., Anderson, A. N., Robinson, T. S., Strgar, L., Sutton, T. L., Conley, P., Klocke, C., Gibbs, S. L., Chang, Y. H., Wu, G., Wong, M. H. & Skalet, A. H., Oct 2022, In: Cancers. 14, 19, 4617.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Uveal melanoma 100%
  • Hybrid Cells 91%
  • Circulating Neoplastic Cells 51%
  • Biomarkers 10%
  • Neoplasms 10%

• Computational multiplex panel reduction to maximize information retention in breast cancer tissue microarrays

  Ternes, L., Lin, J. R., Chen, Y. A., Gray, J. W. & Chang, Y. H., Sep 2022, In: PLoS computational biology. 18, 9, e1010505.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Microarray 100%
  • Breast Cancer 96%
  • breast neoplasms 89%
  • Microarrays 89%
  • cancer 73%

• Continuum dynamics and statistical correction of compositional heterogeneity in multivalent IDP oligomers resolved by single-particle EM

  Mostofian, B., McFarland, R., Estelle, A., Howe, J., Barbar, E., Reichow, S. L. & Zuckerman, D. M., May 15 2022, In: Journal of molecular biology. 434, 9, 167520.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Intrinsically Disordered Proteins 100%
  • Single Molecule Imaging 94%
  • Electron Microscopy 59%
  • Inosine Diphosphate 38%
  • Macromolecular Substances 32%
  1 Scopus citations

• Cryo-electron Microscopy of Adeno-associated Virus

  Stagg, S. M., Yoshioka, C., Davulcu, O. & Chapman, M., Sep 14 2022, In: Chemical Reviews. 1c00936.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Cryo-Electron Microscopy 100%
  • Protein 31%
  • Single-Stranded DNA 27%
  • Epitope 25%
  • Neutralization 25%

• Current and Future Applications of Fluorescence Guidance in Orthopaedic Surgery

  Streeter, S. S., Hebert, K. A., Bateman, L. M., Ray, G. S., Dean, R. E., Geffken, K. T., Resnick, C. T., Austin, D. C., Bell, J. E., Sparks, M. B., Gibbs, S. L., Samkoe, K. S., Gitajn, I. L., Elliott, J. T. & Henderson, E. R., 2022, (Accepted/In press) In: Molecular Imaging and Biology.

  Research output: Contribution to journal › Review article › peer-review

  • Orthopedic Procedures 100%
  • Fluorescence 75%
  • Orthopedics 33%
  • Patient Care 14%
  • Perfusion 13%

• Decellularization Strategies for Regenerating Cardiac and Skeletal Muscle Tissues

  Tan, Y. H., Helms, H. R. & Nakayama, K. H., Feb 28 2022, In: Frontiers in Bioengineering and Biotechnology. 10, 831300.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Musculoskeletal 100%
  • Regenerative Medicine 65%
  • Muscle 57%
  • Biomaterial 52%
  • Tissue 52%
  4 Scopus citations

• Deciphering the Immune Complexity in Esophageal Adenocarcinoma and Pre-Cancerous Lesions With Sequential Multiplex Immunohistochemistry and Sparse Subspace Clustering Approach

  Sundaram, S., Kim, E. N., Jones, G. M., Sivagnanam, S., Tripathi, M., Miremadi, A., Di Pietro, M., Coussens, L. M., Fitzgerald, R. C., Chang, Y. H. & Zhuang, L., May 19 2022, In: Frontiers in immunology. 13, 874255.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Cluster Analysis 100%
  • Adenocarcinoma 87%
  • Immunohistochemistry 77%
  • Metaplasia 34%
  • Regulatory T-Lymphocytes 31%

• Development of a nanoparticle-based immunotherapy targeting PD-L1 and PLK1 for lung cancer treatment

  Reda, M., Ngamcherdtrakul, W., Nelson, M. A., Siriwon, N., Wang, R., Zaidan, H. Y., Bejan, D. S., Reda, S., Hoang, N. H., Crumrine, N. A., Rehwaldt, J. P. C., Bindal, A., Mills, G. B., Gray, J. W. & Yantasee, W., Dec 2022, In: Nature communications. 13, 1, 4261.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • inhibitors 100%
  • lungs 93%
  • cancer 80%
  • Nanoparticles 76%
  • Immunotherapy 75%
  7 Scopus citations

• Dipeptidyl peptidase IV inhibition delays developmental programming of obesity and metabolic disease in male offspring of obese mothers

  Montaniel, K. R. C., Bucher, M., Phillips, E. A., Li, C., Sullivan, E. L., Kievit, P., Rugonyi, S., Nathanielsz, P. W. & Maloyan, A., Dec 24 2022, In: Journal of Developmental Origins of Health and Disease. 13, 6, p. 727-740 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Dipeptidyl Peptidase 4 100%
  • Metabolic Diseases 77%
  • Maternal Obesity 67%
  • Obesity 51%
  • High Fat Diet 33%
  3 Scopus citations

• Do sensorimotor control properties mediate sway in people with chronic balance complaints following mTBI?

  Parrington, L., Brumbach, B. H., Peterka, R. J. & King, L. A., Jul 2022, In: Gait and Posture. 96, p. 173-178 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Brain Concussion 100%
  • Postural Balance 23%
  • Equipment and Supplies 23%
  • Symptom Assessment 22%
  • Torque 21%
  1 Scopus citations

• Effect of Blood Flow on Cardiac Morphogenesis and Formation of Congenital Heart Defects

  Trinidad, F., Rubonal, F., Rodriguez de Castro, I., Pirzadeh, I., Gerrah, R., Kheradvar, A. & Rugonyi, S., Sep 2022, In: Journal of Cardiovascular Development and Disease. 9, 9, 303.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Congenital Heart Defects 100%
  • Morphogenesis 86%
  • Heart 55%
  • Heart Diseases 55%
  • Embryonic and Fetal Development 26%

• Effects of ex vivo blood anticoagulation and preanalytical processing time on the proteome content of platelets

  Tassi Yunga, S., Gower, A. J., Melrose, A. R., Fitzgerald, M. K., Rajendran, A., Lusardi, T. A., Armstrong, R. J., Minnier, J., Jordan, K. R., McCarty, O. J. T., David, L. L., Wilmarth, P. A., Reddy, A. P. & Aslan, J. E., Jun 2022, In: Journal of Thrombosis and Haemostasis. 20, 6, p. 1437-1450 14 p.

  Research output: Contribution to journal › Article › peer-review

  • Proteome 100%
  • Blood Platelets 74%
  • Edetic Acid 16%
  • Extracellular Traps 15%
  • Anticoagulants 14%
  1 Scopus citations

• Endovascular Venous Stenosis and Thrombosis Large Animal Model: Angiographic, Histological, and Biomechanical Characterizations

  Li, N., Ferracane, J., Andeen, N., Lewis, S., Woltjer, R., Rugonyi, S., Jahangiri, Y., Uchida, B., Farsad, K., Kaufman, J. A. & Al-Hakim, R. A., Mar 2022, In: Journal of Vascular and Interventional Radiology. 33, 3, p. 255-261.e2

  Research output: Contribution to journal › Article › peer-review

  • Venous Thrombosis 100%
  • Radiofrequency Ablation 92%
  • Pathologic Constriction 83%
  • Animal Models 75%
  • Iliac Vein 55%
  1 Scopus citations

• Exploring approaches for predictive cancer patient digital twins: Opportunities for collaboration and innovation

  Stahlberg, E. A., Abdel-Rahman, M., Aguilar, B., Asadpoure, A., Beckman, R. A., Borkon, L. L., Bryan, J. N., Cebulla, C. M., Chang, Y. H., Chatterjee, A., Deng, J., Dolatshahi, S., Gevaert, O., Greenspan, E. J., Hao, W., Hernandez-Boussard, T., Jackson, P. R., Kuijjer, M., Lee, A., Macklin, P., & 13 othersMadhavan, S., McCoy, M. D., Mohammad Mirzaei, N., Razzaghi, T., Rocha, H. L., Shahriyari, L., Shmulevich, I., Stover, D. G., Sun, Y., Syeda-Mahmood, T., Wang, J., Wang, Q. & Zervantonakis, I., Oct 6 2022, In: Frontiers in Digital Health. 4, 1007784.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Twins 73%
  • Neoplasms 22%
  • Clostridium perfringens delta-toxin 18%
  • Computing Methodologies 14%
  • Interdisciplinary Research 11%

• Fast and Multiplexed Super Resolution Imaging of Fixed and Immunostained Cells with DNA-PAINT-ERS

  Koester, A. M., Szczepaniak, M. & Nan, X., Nov 2022, In: Current Protocols. 2, 11, e618.

  Research output: Contribution to journal › Article › peer-review

  • DNA 100%
  • ethylene carbonate 46%
  • Glass Substrate 44%
  • Carbonate 34%
  • Monolayer 33%

• Ferrous iron–activatable drug conjugate achieves potent MAPK blockade in KRAS-driven tumors

  Jiang, H., Muir, R. K., Gonciarz, R. L., Olshen, A. B., Yeh, I., Hann, B. C., Zhao, N., Wang, Y. H., Behr, S. C., Korkola, J. E., Evans, M. J., Collisson, E. A. & Renslo, A. R., Apr 4 2022, In: Journal of Experimental Medicine. 219, 4, e20210739.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Pharmaceutical Preparations 100%
  • Neoplasms 77%
  • Iron 67%
  • Metabolic Activation 49%
  • Mitogen-Activated Protein Kinase Kinases 43%
  5 Scopus citations