Research output per year
Research output per year
Research output
- 1 - 50 out of 1,114 results
Search results
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2022
Androgen receptor activity in T cells limits checkpoint blockade efficacy
Guan, X., Polesso, F., Wang, C., Sehrawat, A., Hawkins, R. M., Murray, S. E., Thomas, G. V., Caruso, B., Thompson, R. F., Wood, M. A., Hipfinger, C., Hammond, S. A., Graff, J. N., Xia, Z. & Moran, A. E., Jun 23 2022, In: Nature. 606, 7915, p. 791-796 6 p.Research output: Contribution to journal › Article › peer-review
3 Scopus citations -
An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer
Johnson, B. E., Creason, A. L., Stommel, J. M., Keck, J. M., Parmar, S., Betts, C. B., Blucher, A., Boniface, C., Bucher, E., Burlingame, E., Camp, T., Chin, K., Eng, J., Estabrook, J., Feiler, H. S., Heskett, M. B., Hu, Z., Kolodzie, A., Kong, B. L., Labrie, M. & 26 others, , Feb 15 2022, In: Cell Reports Medicine. 3, 2, 100525.Research output: Contribution to journal › Article › peer-review
Open Access -
Basic science research opportunities in thrombosis and hemostasis: Communication from the SSC of the ISTH
Mutch, N. J., Walters, S., Gardiner, E. E., McCarty, O. J. T., De Meyer, S. F., Schroeder, V. & Meijers, J. C. M., 2022, (Accepted/In press) In: Journal of Thrombosis and Haemostasis.Research output: Contribution to journal › Article › peer-review
Open Access -
Do sensorimotor control properties mediate sway in people with chronic balance complaints following mTBI?
Parrington, L., Brumbach, B. H., Peterka, R. J. & King, L., Jul 2022, In: Gait and Posture. 96, p. 173-178 6 p.Research output: Contribution to journal › Article › peer-review
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Effects of ex vivo blood anticoagulation and preanalytical processing time on the proteome content of platelets
Tassi Yunga, S., Gower, A. J., Melrose, A. R., Fitzgerald, M. K., Rajendran, A., Lusardi, T. A., Armstrong, R. J., Minnier, J., Jordan, K. R., McCarty, O. J. T., David, L. L., Wilmarth, P. A., Reddy, A. P. & Aslan, J. E., 2022, (Accepted/In press) In: Journal of Thrombosis and Haemostasis.Research output: Contribution to journal › Article › peer-review
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Endovascular Venous Stenosis and Thrombosis Large Animal Model: Angiographic, Histological, and Biomechanical Characterizations
Li, N., Ferracane, J., Andeen, N., Lewis, S., Woltjer, R., Rugonyi, S., Jahangiri, Y., Uchida, B., Farsad, K., Kaufman, J. A. & Al-Hakim, R. A., Mar 2022, In: Journal of Vascular and Interventional Radiology. 33, 3, p. 255-261.e2Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Ibrutinib Inhibits BMX-Dependent Endothelial VCAM-1 Expression In Vitro and Pro-Atherosclerotic Endothelial Activation and Platelet Adhesion In Vivo
Kohs, T. C. L., Olson, S. R., Pang, J., Jordan, K. R., Zheng, T. J., Xie, A., Hodovan, J., Muller, M., McArthur, C., Johnson, J., Sousa, B. B., Wallisch, M., Kievit, P., Aslan, J. E., Seixas, J. D., Bernardes, G. J. L., Hinds, M. T., Lindner, J. R., McCarty, O. J. T., Puy, C. & 1 others, , Jun 2022, In: Cellular and Molecular Bioengineering. 15, 3, p. 231-243 13 p.Research output: Contribution to journal › Article › peer-review
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Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data
Sun, D., Guan, X., Moran, A. E., Wu, L. Y., Qian, D. Z., Schedin, P., Dai, M. S., Danilov, A., Alumkal, J., Adey, A. C., Spellman, P. T. & Xia, Z., Apr 2022, In: Nature biotechnology. 40, 4, p. 527-538 12 p.Research output: Contribution to journal › Article › peer-review
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Impact of Postthrombotic Vein Wall Biomechanics on Luminal Flow during Venous Angioplasty and Stent Placement: Computational Modeling Results
Li, N., Ferracane, J., Andeen, N., Lewis, S., Woltjer, R., Rugonyi, S., Jahangiri, Y., Uchida, B., Farsad, K., Kaufman, J. A. & Al-Hakim, R., Mar 2022, In: Journal of Vascular and Interventional Radiology. 33, 3, p. 262-267 6 p.Research output: Contribution to journal › Article › peer-review
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Incorporating Glucose Variability into Glucose Forecasting Accuracy Assessment Using the New Glucose Variability Impact Index and the Prediction Consistency Index: An LSTM Case Example
Mosquera-Lopez, C. & Jacobs, P. G., Jan 2022, In: Journal of Diabetes Science and Technology. 16, 1, p. 7-18 12 p.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Minimal observed impact of HLA genotype on hospitalization and severity of SARS-CoV-2 infection
Nguyen, A., Yusufali, T., Hollenbach, J. A., Nellore, A. & Thompson, R. F., Jun 2022, In: HLA. 99, 6, p. 607-613 7 p.Research output: Contribution to journal › Article › peer-review
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2021
A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery
SMC-RNA Challenge Participants, Aug 18 2021, In: Cell Systems. 12, 8, p. 827-838.e5Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
An expanded universe of cancer targets
the Cancer Target Discovery and Development Network, Mar 4 2021, In: Cell. 184, 5, p. 1142-1155 14 p.Research output: Contribution to journal › Review article › peer-review
Open Access33 Scopus citations -
Automated Detection of Real-World Falls: Modeled from People with Multiple Sclerosis
Mosquera-Lopez, C., Wan, E., Shastry, M., Folsom, J., Leitschuh, J., Condon, J., Rajhbeharrysingh, U., Hildebrand, A., Cameron, M. & Jacobs, P. G., Jun 2021, In: IEEE journal of biomedical and health informatics. 25, 6, p. 1975-1984 10 p., 9272845.Research output: Contribution to journal › Article › peer-review
5 Scopus citations -
BET bromodomain inhibition blocks an AR-repressed, E2F1-activated treatment-emergent neuroendocrine prostate cancer lineage plasticity program
Kim, D. H., Sun, D., Storck, W. K., Leng, K. W., Jenkins, C., Coleman, D. J., Sampson, D., Guan, X., Kumaraswamy, A., Rodansky, E. S., Urrutia, J. A., Schwartzman, J. A., Zhang, C., Beltran, H., Labrecque, M. P., Morrissey, C., Lucas, J. M., Coleman, I. M., Nelson, P. S., Corey, E. & 16 others, , Sep 1 2021, In: Clinical Cancer Research. 27, 17, p. 4923-4936 14 p.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
Causal interactions from proteomic profiles: Molecular data meet pathway knowledge
Babur, O., Luna, A., Korkut, A., Durupinar, F., Siper, M. C., Dogrusoz, U., Vaca Jacome, A. S., Peckner, R., Christianson, K. E., Jaffe, J. D., Spellman, P. T., Aslan, J. E., Sander, C. & Demir, E., Jun 11 2021, In: Patterns. 2, 6, 100257.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
Cellular senescence in cancer: from mechanisms to detection
Ou, H. L., Hoffmann, R., González-López, C., Doherty, G. J., Korkola, J. E. & Muñoz-Espín, D., Oct 2021, In: Molecular Oncology. 15, 10, p. 2634-2671 38 p.Research output: Contribution to journal › Review article › peer-review
Open Access8 Scopus citations -
Comparing fall detection methods in people with multiple sclerosis: A prospective observational cohort study
Hildebrand, A., Jacobs, P. G., Folsom, J. G., Mosquera-Lopez, C., Wan, E. & Cameron, M. H., Nov 2021, In: Multiple sclerosis and related disorders. 56, 103270.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Corrigendum to: COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms (Molecular Systems Biology, (2021), 17, 10, 10.15252/msb.202110387)
the COVID-19 Disease Map Community, Dec 2021, In: Molecular Systems Biology. 17, 12, e10851.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms
the COVID-19 Disease Map Community, Oct 2021, In: Molecular Systems Biology. 17, 10, e10387.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
Cryo-electron Microscopy of Adeno-associated Virus
Stagg, S. M., Yoshioka, C., Davulcu, O. & Chapman, M. S., 2021, (Accepted/In press) In: Chemical Reviews. 1c00936.Research output: Contribution to journal › Review article › peer-review
Open Access -
Erratum: Investigating β-lactam drug targets in mycobacterium tuberculosis using chemical probes (ACS Infectious Diseases (2021) 7:2 (461-470) DOI: 10.1021/acsinfecdis.0c00809)
Levine, S. & Beatty, K., Apr 9 2021, In: ACS Infectious Diseases. 7, 4, p. 937 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Erratum: Computational Estimation of Microsecond to Second Atomistic Folding Times (Journal of the American Chemical Society (2019) 141:16 (6519-6526) DOI: 10.1021/jacs.8b10735)
Adhikari, U., Mostofian, B., Copperman, J., Subramanian, S. R., Petersen, A. A. & Zuckerman, D. M., May 19 2021, In: Journal of the American Chemical Society. 143, 19, p. 7588 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies
Labrie, M., Li, A., Creason, A., Betts, C., Keck, J., Johnson, B., Sivagnanam, S., Boniface, C., Ma, H., Blucher, A., Chang, Y. H., Chin, K., Vuky, J., Guimaraes, A. R., Downey, M., Lim, J. Y., Gao, L., Siex, K., Parmar, S., Kolodzie, A. & 8 others, , Dec 2021, In: npj Precision Oncology. 5, 1, 92.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
National Cancer Institute Workshop on Artificial Intelligence in Radiation Oncology: Training the Next Generation
Kang, J., Thompson, R. F., Aneja, S., Lehman, C., Trister, A., Zou, J., Obcemea, C. & El Naqa, I., Jan 1 2021, In: Practical Radiation Oncology. 11, 1, p. 74-83 10 p.Research output: Contribution to journal › Article › peer-review
5 Scopus citations -
National case fatality rates of the COVID-19 pandemic
Ergönül, Ö., Akyol, M., Tanrıöver, C., Tiemeier, H., Petersen, E., Petrosillo, N. & Gönen, M., Jan 2021, In: Clinical Microbiology and Infection. 27, 1, p. 118-124 7 p.Research output: Contribution to journal › Article › peer-review
Open Access11 Scopus citations -
Pregnancy and weaning regulate human maternal liver size and function
Bartlett, A. Q., Vesco, K. K., Purnell, J. Q., Francisco, M., Goddard, E., Guan, X., De Barber, A., Leo, M. C., Baetscher, E., Rooney, W., Naugler, W., Guimaraes, A. R., Catalano, P., Xia, Z. & Schedin, P., Nov 30 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 48, e2107269118.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Prognostic and therapeutic role of tumor-infiltrating lymphocyte subtypes in breast cancer
Nelson, M. A., Ngamcherdtrakul, W., Luoh, S. W. & Yantasee, W., Jun 2021, In: Cancer and Metastasis Reviews. 40, 2, p. 519-536 18 p.Research output: Contribution to journal › Review article › peer-review
10 Scopus citations -
Proteogenomic and metabolomic characterization of human glioblastoma
Clinical Proteomic Tumor Analysis Consortium, Apr 12 2021, In: Cancer Cell. 39, 4, p. 509-528.e20Research output: Contribution to journal › Article › peer-review
Open Access64 Scopus citations -
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma
Clinical Proteomic Tumor Analysis Consortium, Mar 8 2021, In: Cancer Cell. 39, 3, p. 361-379.e16Research output: Contribution to journal › Article › peer-review
Open Access41 Scopus citations -
Sensitivity to targeted therapy differs between HER2-amplified breast cancer cells harboring kinase and helical domain mutations in PIK3CA
Garay, J. P., Smith, R., Devlin, K., Hollern, D. P., Liby, T., Liu, M., Boddapati, S., Watson, S. S., Esch, A., Zheng, T., Thompson, W., Babcock, D., Kwon, S., Chin, K., Heiser, L., Gray, J. W. & Korkola, J. E., Dec 2021, In: Breast Cancer Research. 23, 1, 81.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance
Joshi, S. K., Nechiporuk, T., Bottomly, D., Piehowski, P. D., Reisz, J. A., Pittsenbarger, J., Kaempf, A., Gosline, S. J. C., Wang, Y. T., Hansen, J. R., Gritsenko, M. A., Hutchinson, C., Weitz, K. K., Moon, J., Cendali, F., Fillmore, T. L., Tsai, C. F., Schepmoes, A. A., Shi, T., Arshad, O. A. & 12 others, , Jul 12 2021, In: Cancer Cell. 39, 7, p. 999-1014.e8Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
The impact of tumor epithelial and microenvironmental heterogeneity on treatment responses in HER2+ breast cancer
Janiszewska, M., Stein, S., Filho, O. M., Eng, J., Kingston, N. L., Harper, N. W., Rye, I. H., Alečković, M., Trinh, A., Murphy, K. C., Marangoni, E., Cristea, S., Oakes, B., Winer, E. P., Krop, I. E., Russnes, H. G., Spellman, P. T., Bucher, E., Hu, Z., Chin, K. & 3 others, , Jun 8 2021, In: JCI Insight. 6, 11, e147617.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
Thrombosis and Bleeding in Extracorporeal Membrane Oxygenation (ECMO) Without Anticoagulation: A Systematic Review
Olson, S. R., Murphree, C. R., Zonies, D., Meyer, A. D., McCarty, O. J. T., Deloughery, T. G. & Shatzel, J. J., Mar 1 2021, In: ASAIO Journal. 67, 3, p. 290-296 7 p.Research output: Contribution to journal › Article › peer-review
17 Scopus citations -
2020
A community effort to create standards for evaluating tumor subclonal reconstruction
DREAM SMC-Het Participants, Jan 1 2020, In: Nature biotechnology. 38, 1, p. 97-107 11 p.Research output: Contribution to journal › Article › peer-review
29 Scopus citations -
Adeno-associated virus (AAV-DJ)—Cryo-EM structure at 1.56 Å resolution
Xie, Q., Yoshioka, C. K. & Chapman, M. S., Oct 20 2020, In: Viruses. 12, 10, 1194.Research output: Contribution to journal › Article › peer-review
Open Access9 Scopus citations -
A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer
Variant Interpretation for Cancer Consortium, Apr 1 2020, In: Nature genetics. 52, 4, p. 448-457 10 p.Research output: Contribution to journal › Article › peer-review
Open Access45 Scopus citations -
Alternative splicing of LSD1+8a in neuroendocrine prostate cancer is mediated by SRRM4
Coleman, D. J., Sampson, D. A., Sehrawat, A., Kumaraswamy, A., Sun, D., Wang, Y., Schwartzman, J., Urrutia, J., Lee, A. R., Coleman, I. M., Nelson, P. S., Dong, X., Morrissey, C., Corey, E., Xia, Z., Yates, J. A. & Alumkal, J., Jun 2020, In: Neoplasia (United States). 22, 6, p. 253-262 10 p.Research output: Contribution to journal › Article › peer-review
Open Access13 Scopus citations -
A multitask multiple kernel learning formulation for discriminating early- And late-stage cancers
Rahimi, A. & Gonen, M., Mar 31 2020, In: Bioinformatics. 36, 12, p. 3766-3772 7 p.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
An artificial intelligence decision support system for the management of type 1 diabetes
Tyler, N. S., Mosquera-Lopez, C. M., Wilson, L. M., Dodier, R. H., Branigan, D. L., Gabo, V. B., Guillot, F. H., Hilts, W. W., El Youssef, J., Castle, J. R. & Jacobs, P. G., Jul 1 2020, In: Nature Metabolism. 2, 7, p. 612-619 8 p.Research output: Contribution to journal › Article › peer-review
38 Scopus citations -
Androgen receptor-binding sites are highly mutated in prostate cancer
Morova, T., McNeill, D. R., Lallous, N., Gönen, M., Dalal, K., Wilson, D. M., Gürsoy, A., Keskin, Ö. & Lack, N. A., Dec 1 2020, In: Nature communications. 11, 1, 832.Research output: Contribution to journal › Article › peer-review
Open Access16 Scopus citations -
An efficient framework to identify key miRNA-mRNA regulatory modules in cancer
Mokhtaridoost, M. & Gönen, M., Dec 1 2020, In: Bioinformatics. 36, p. I592-I600Research output: Contribution to journal › Article › peer-review
Open Access -
A phase II single-arm study of pembrolizumab with enzalutamide in men with metastatic castration-resistant prostate cancer progressing on enzalutamide alone
Graff, J. N., Beer, T. M., Alumkal, J. J., Slottke, R. E., Redmond, W. L., Thomas, G. V., Thompson, R. F., Wood, M. A., Koguchi, Y., Chen, Y., Latour, E., Bergan, R. C., Drake, C. G. & Moran, A. E., Jul 2 2020, In: Journal for immunotherapy of cancer. 8, 2, e00642.Research output: Contribution to journal › Article › peer-review
Open Access34 Scopus citations -
A prospective prediction tool for understanding Crimean–Congo haemorrhagic fever dynamics in Turkey
Ak, Ergönül & Gönen, M., Jan 2020, In: Clinical Microbiology and Infection. 26, 1, p. 123.e1-123.e7Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (Nature Communications, (2020), 11, 1, (4748), 10.1038/s41467-020-18151-y)
MC3 Working Group, PCAWG novel somatic mutation calling methods working group & PCAWG Consortium, Dec 2020, In: Nature communications. 11, 1, 6232.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Automatic Transformation and Integration to Improve Visualization and Discovery of Latent Effects in Imaging Data
Hunt, G. J., Dane, M. A., Korkola, J. E., Heiser, L. M. & Gagnon-Bartsch, J. A., 2020, In: Journal of Computational and Graphical Statistics. 29, 4, p. 929-941 13 p.Research output: Contribution to journal › Article › peer-review
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Burden of tumor mutations, neoepitopes, and other variants are weak predictors of cancer immunotherapy response and overall survival
Wood, M. A., Weeder, B. R., David, J. K., Nellore, A. & Thompson, R., Mar 30 2020, In: Genome Medicine. 12, 1, 33.Research output: Contribution to journal › Article › peer-review
Open Access31 Scopus citations -
Butler enables rapid cloud-based analysis of thousands of human genomes
PCAWG Technical Working Group & PCAWG Consortium, Mar 1 2020, In: Nature biotechnology. 38, 3, p. 288-292 5 p.Research output: Contribution to journal › Article › peer-review
5 Scopus citations -
Crosstalk between invadopodia and the extracellular matrix
Iizuka, S., Leon, R. P., Gribbin, K. P., Zhang, Y., Navarro, J., Smith, R., Devlin, K., Wang, L. G., Gibbs, S. L., Korkola, J., Nan, X. & Courtneidge, S. A., Sep 2020, In: European Journal of Cell Biology. 99, 7, 151122.Research output: Contribution to journal › Article › peer-review
5 Scopus citations -
EmrE reminds us to expect the unexpected in membrane transport
Grabe, M., Zuckerman, D. M. & Rosenberg, J. M., Jan 6 2020, In: The Journal of general physiology. 152, 1Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations