Abstract
This report describes the outcomes of a recent workshop, building on a series of workshops from the last three years with the goal if integrating genomics and biodiversity research, with a more specific goal here to express terms in Darwin Core and Audubon Core, where class constructs have been historically underspecified, into a Biological Collections Ontology (BCO) framework. For the purposes of this workshop, the BCO provided the context for fully defining classes as well as object and data properties, including domain and range information, for both the Darwin Core and Audubon Core. In addition, the workshop participants reviewed technical specifications and approaches for annotating instance data with BCO terms. Finally, we laid out proposed activities for the next 3 to 18 months to continue this work.
| Original language | English (US) |
|---|---|
| Journal | Standards in Genomic Sciences |
| Volume | 10 |
| Issue number | MAY2015 |
| DOIs | |
| State | Published - May 1 2015 |
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Keywords
- Biodiversity
- Community
- Darwin core
- Microbial ecology
- Ontology
- OWL
- Population
- RDF
- Sequencing
ASJC Scopus subject areas
- Genetics
Cite this
Meeting report : Identifying practical applications of ontologies for biodiversity informatics. / Deck, John; Guralnick, Robert; Walls, Ramona; Blum, Stanley; Haendel, Melissa; Matsunaga, Andréa; Wieczorek, John.
In: Standards in Genomic Sciences, Vol. 10, No. MAY2015, 01.05.2015.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - Meeting report
T2 - Identifying practical applications of ontologies for biodiversity informatics
AU - Deck, John
AU - Guralnick, Robert
AU - Walls, Ramona
AU - Blum, Stanley
AU - Haendel, Melissa
AU - Matsunaga, Andréa
AU - Wieczorek, John
PY - 2015/5/1
Y1 - 2015/5/1
N2 - This report describes the outcomes of a recent workshop, building on a series of workshops from the last three years with the goal if integrating genomics and biodiversity research, with a more specific goal here to express terms in Darwin Core and Audubon Core, where class constructs have been historically underspecified, into a Biological Collections Ontology (BCO) framework. For the purposes of this workshop, the BCO provided the context for fully defining classes as well as object and data properties, including domain and range information, for both the Darwin Core and Audubon Core. In addition, the workshop participants reviewed technical specifications and approaches for annotating instance data with BCO terms. Finally, we laid out proposed activities for the next 3 to 18 months to continue this work.
AB - This report describes the outcomes of a recent workshop, building on a series of workshops from the last three years with the goal if integrating genomics and biodiversity research, with a more specific goal here to express terms in Darwin Core and Audubon Core, where class constructs have been historically underspecified, into a Biological Collections Ontology (BCO) framework. For the purposes of this workshop, the BCO provided the context for fully defining classes as well as object and data properties, including domain and range information, for both the Darwin Core and Audubon Core. In addition, the workshop participants reviewed technical specifications and approaches for annotating instance data with BCO terms. Finally, we laid out proposed activities for the next 3 to 18 months to continue this work.
KW - Biodiversity
KW - Community
KW - Darwin core
KW - Microbial ecology
KW - Ontology
KW - OWL
KW - Population
KW - RDF
KW - Sequencing
UR - http://www.scopus.com/inward/record.url?scp=84940568529&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84940568529&partnerID=8YFLogxK
U2 - 10.1186/s40793-015-0014-0
DO - 10.1186/s40793-015-0014-0
M3 - Article
AN - SCOPUS:84940568529
VL - 10
JO - Environmental Microbiomes
JF - Environmental Microbiomes
SN - 1944-3277
IS - MAY2015
ER -