Human Mycobacterium tuberculosis CD8 T Cell Antigens/Epitopes Identified by a Proteomic Peptide Library

David Lewinsohn, Gwendolyn M. Swarbrick, Meghan E. Cansler, Megan D. Null, Veena Rajaraman, Marisa M. Frieder, David R. Sherman, Shannon McWeeney, Deborah Lewinsohn

Research output: Contribution to journalArticle

26 Citations (Scopus)

Abstract

Identification of CD8+ T cell antigens/epitopes expressed by human pathogens with large genomes is especially challenging, yet necessary for vaccine development. Immunity to tuberculosis, a leading cause of mortality worldwide, requires CD8+ T cell immunity, yet the repertoire of CD8 antigens/epitopes remains undefined. We used integrated computational and proteomic approaches to screen 10% of the Mycobacterium tuberculosis (Mtb) proteome for CD8 Mtb antigens. We designed a weighting schema based upon a Multiple Attribute Decision Making:framework to select 10% of the Mtb proteome with a high probability of containing CD8+ T cell epitopes. We created a synthetic peptide library consisting of 15-mers overlapping by 11 aa. Using the interferon-γ ELISPOT assay and Mtb-infected dendritic cells as antigen presenting cells, we screened Mtb-specific CD8+ T cell clones restricted by classical MHC class I molecules (MHC class Ia molecules), that were isolated from Mtb-infected humans, against this library. Three novel CD8 antigens were unambiguously identified: the EsxJ family (Rv1038c, Rv1197, Rv3620c, Rv2347c, Rv1792), PE9 (Rv1088), and PE_PGRS42 (Rv2487c). The epitopes are B5701-restricted EsxJ24-34, B3905-restricted PE953-67, and B3514-restricted PE_PGRS4248-56, respectively. The utility of peptide libraries in identifying unknown epitopes recognized by classically restricted CD8+ T cells was confirmed, which can be applied to other intracellular pathogens with large size genomes. In addition, we identified three novel Mtb epitopes/antigens that may be evaluated for inclusion in vaccines and/or diagnostics for tuberculosis.

Original languageEnglish (US)
Article numbere67016
JournalPLoS One
Volume8
Issue number6
DOIs
StatePublished - Jun 21 2013

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peptide libraries
CD8 Antigens
Peptide Library
T-Lymphocyte Epitopes
T-cells
Viral Tumor Antigens
Mycobacterium tuberculosis
Proteomics
proteomics
epitopes
Epitopes
T-lymphocytes
antigens
Antigens
Pathogens
Proteome
T-Lymphocytes
Immunity
Tuberculosis
Vaccines

ASJC Scopus subject areas

  • Agricultural and Biological Sciences(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Medicine(all)

Cite this

Human Mycobacterium tuberculosis CD8 T Cell Antigens/Epitopes Identified by a Proteomic Peptide Library. / Lewinsohn, David; Swarbrick, Gwendolyn M.; Cansler, Meghan E.; Null, Megan D.; Rajaraman, Veena; Frieder, Marisa M.; Sherman, David R.; McWeeney, Shannon; Lewinsohn, Deborah.

In: PLoS One, Vol. 8, No. 6, e67016, 21.06.2013.

Research output: Contribution to journalArticle

Lewinsohn, David ; Swarbrick, Gwendolyn M. ; Cansler, Meghan E. ; Null, Megan D. ; Rajaraman, Veena ; Frieder, Marisa M. ; Sherman, David R. ; McWeeney, Shannon ; Lewinsohn, Deborah. / Human Mycobacterium tuberculosis CD8 T Cell Antigens/Epitopes Identified by a Proteomic Peptide Library. In: PLoS One. 2013 ; Vol. 8, No. 6.
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