Dissemination of scientific software with Galaxy ToolShed

Daniel Blankenberg, Gregory Von Kuster, Emil Bouvier, Dannon Baker, Enis Afgan, Nicholas Stoler, James Taylor, Anton Nekrutenko, Dave Clements, Nate Coraor, Carl Eberhard, Dorine Francheteau, Jeremy Goecks, Sam Guerler, Jennifer Jackson, Ira Cooke, Jim Johnson, Ed Kirton, Peter Cock, Brad Chapman & 2 others Bjürn Grüning, Ross Lazarus

Research output: Contribution to journalLetter

76 Citations (Scopus)

Abstract

The proliferation of web-based integrative analysis frameworks has enabled users to perform complex analyses directly through the web. Unfortunately, it also revoked the freedom to easily select the most appropriate tools. To address this, we have developed Galaxy ToolShed.

Original languageEnglish (US)
Article number403
JournalGenome Biology
Volume15
Issue number2
DOIs
StatePublished - Feb 20 2014
Externally publishedYes

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Galaxies
Software
software
freedom
analysis

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Genetics
  • Cell Biology

Cite this

Blankenberg, D., Von Kuster, G., Bouvier, E., Baker, D., Afgan, E., Stoler, N., ... Lazarus, R. (2014). Dissemination of scientific software with Galaxy ToolShed. Genome Biology, 15(2), [403]. https://doi.org/10.1186/gb4161

Dissemination of scientific software with Galaxy ToolShed. / Blankenberg, Daniel; Von Kuster, Gregory; Bouvier, Emil; Baker, Dannon; Afgan, Enis; Stoler, Nicholas; Taylor, James; Nekrutenko, Anton; Clements, Dave; Coraor, Nate; Eberhard, Carl; Francheteau, Dorine; Goecks, Jeremy; Guerler, Sam; Jackson, Jennifer; Cooke, Ira; Johnson, Jim; Kirton, Ed; Cock, Peter; Chapman, Brad; Grüning, Bjürn; Lazarus, Ross.

In: Genome Biology, Vol. 15, No. 2, 403, 20.02.2014.

Research output: Contribution to journalLetter

Blankenberg, D, Von Kuster, G, Bouvier, E, Baker, D, Afgan, E, Stoler, N, Taylor, J, Nekrutenko, A, Clements, D, Coraor, N, Eberhard, C, Francheteau, D, Goecks, J, Guerler, S, Jackson, J, Cooke, I, Johnson, J, Kirton, E, Cock, P, Chapman, B, Grüning, B & Lazarus, R 2014, 'Dissemination of scientific software with Galaxy ToolShed', Genome Biology, vol. 15, no. 2, 403. https://doi.org/10.1186/gb4161
Blankenberg D, Von Kuster G, Bouvier E, Baker D, Afgan E, Stoler N et al. Dissemination of scientific software with Galaxy ToolShed. Genome Biology. 2014 Feb 20;15(2). 403. https://doi.org/10.1186/gb4161
Blankenberg, Daniel ; Von Kuster, Gregory ; Bouvier, Emil ; Baker, Dannon ; Afgan, Enis ; Stoler, Nicholas ; Taylor, James ; Nekrutenko, Anton ; Clements, Dave ; Coraor, Nate ; Eberhard, Carl ; Francheteau, Dorine ; Goecks, Jeremy ; Guerler, Sam ; Jackson, Jennifer ; Cooke, Ira ; Johnson, Jim ; Kirton, Ed ; Cock, Peter ; Chapman, Brad ; Grüning, Bjürn ; Lazarus, Ross. / Dissemination of scientific software with Galaxy ToolShed. In: Genome Biology. 2014 ; Vol. 15, No. 2.
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