Determination of stromal signatures in breast carcinoma

Robert B. West, Dimitry S.A. Nuyten, Subbaya Subramanian, Torsten O. Nielsen, Christopher L. Corless, Brian P. Rubin, Kelli Montgomery, Shirley Zhu, Rajiv Patel, Tina Hernandez-Boussard, John R. Goldblum, Patrick O. Brown, Marc Van De Vijver, Matt Van De Rijn

Research output: Contribution to journalArticle

168 Scopus citations

Abstract

Many soft tissue tumors recapitulate features of normal connective tissue. We hypothesize that different types of fibroblastic tumors are representative of different populations of fibroblastic cells or different activation states of these cells. We examined two tumors with fibroblastic features, solitary fibrous tumor (SFT) and desmoid-type fibromatosis (DTF), by DNA microarray analysis and found that they have very different expression profiles, including significant differences in their patterns of expression of extracellular matrix genes and growth factors. Using immunohistochemistry and in situ hybridization on a tissue microarray, we found that genes specific for these two tumors have mutually specific expression in the stroma of nonneoplastic tissues. We defined a set of 786 gene spots whose pattern of expression distinguishes SFT from DTF. In an analysis of DNA microarray gene expression data from 295 previously published breast carcinomas, we found that expression of this gene set defined two groups of breast carcinomas with significant differences in overall survival. One of the groups had a favorable outcome and was defined by the expression of DTF genes. The other group of tumors had a poor prognosis and showed variable expression of genes enriched for SFT type. Our findings suggest that the host stromal response varies significantly among carcinomas and that gene expression patterns characteristic of soft tissue tumors can be used to discover new markers for normal connective tissue cells.

Original languageEnglish (US)
Article numbere187
Pages (from-to)1101-1110
Number of pages10
JournalPLoS Biology
Volume3
Issue number6
DOIs
StatePublished - Jun 2005

ASJC Scopus subject areas

  • Neuroscience(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Immunology and Microbiology(all)
  • Agricultural and Biological Sciences(all)

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    West, R. B., Nuyten, D. S. A., Subramanian, S., Nielsen, T. O., Corless, C. L., Rubin, B. P., Montgomery, K., Zhu, S., Patel, R., Hernandez-Boussard, T., Goldblum, J. R., Brown, P. O., Van De Vijver, M., & Van De Rijn, M. (2005). Determination of stromal signatures in breast carcinoma. PLoS Biology, 3(6), 1101-1110. [e187]. https://doi.org/10.1371/journal.pbio.0030187