Abstract
We present a web based visual biocuration workspace, focusing on curating detailed mechanistic pathways. It was designed as a flexible platform where multiple humans, NLP and AI agents can collaborate in real-time on a common model using an event driven API. We will use this platform for exploring disruptive technologies that can scale up biocuration such as NLP, human-computer collaboration, crowd-sourcing, alternative publishing and gamification. As a first step, we are designing a pilot to include an author-curation step into the scientific publishing, where the authors of an article create formal pathway fragments representing their discovery- heavily assisted by computer agents. We envision that this "microcuration" use-case will create an excellent opportunity to integrate multiple NLP approaches and semi-automated curation.
| Original language | English (US) |
|---|---|
| Journal | CEUR Workshop Proceedings |
| Volume | 1747 |
| State | Published - 2016 |
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Keywords
- Biocuration
- Pathways
ASJC Scopus subject areas
- Computer Science(all)
Cite this
Collaborative workspaces for pathway curation. / Durupinar-Babur, Funda; Siper, Metin Can; Dogrusoz, Ugur; Bahceci, Istemi; Babur, Ozgun; Demir, Emek.
In: CEUR Workshop Proceedings, Vol. 1747, 2016.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - Collaborative workspaces for pathway curation
AU - Durupinar-Babur, Funda
AU - Siper, Metin Can
AU - Dogrusoz, Ugur
AU - Bahceci, Istemi
AU - Babur, Ozgun
AU - Demir, Emek
PY - 2016
Y1 - 2016
N2 - We present a web based visual biocuration workspace, focusing on curating detailed mechanistic pathways. It was designed as a flexible platform where multiple humans, NLP and AI agents can collaborate in real-time on a common model using an event driven API. We will use this platform for exploring disruptive technologies that can scale up biocuration such as NLP, human-computer collaboration, crowd-sourcing, alternative publishing and gamification. As a first step, we are designing a pilot to include an author-curation step into the scientific publishing, where the authors of an article create formal pathway fragments representing their discovery- heavily assisted by computer agents. We envision that this "microcuration" use-case will create an excellent opportunity to integrate multiple NLP approaches and semi-automated curation.
AB - We present a web based visual biocuration workspace, focusing on curating detailed mechanistic pathways. It was designed as a flexible platform where multiple humans, NLP and AI agents can collaborate in real-time on a common model using an event driven API. We will use this platform for exploring disruptive technologies that can scale up biocuration such as NLP, human-computer collaboration, crowd-sourcing, alternative publishing and gamification. As a first step, we are designing a pilot to include an author-curation step into the scientific publishing, where the authors of an article create formal pathway fragments representing their discovery- heavily assisted by computer agents. We envision that this "microcuration" use-case will create an excellent opportunity to integrate multiple NLP approaches and semi-automated curation.
KW - Biocuration
KW - Pathways
UR - http://www.scopus.com/inward/record.url?scp=85018775435&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85018775435&partnerID=8YFLogxK
M3 - Article
VL - 1747
JO - CEUR Workshop Proceedings
JF - CEUR Workshop Proceedings
SN - 1613-0073
ER -