Kyle Ellrott

Assistant Professor

  • 13069 Citations
  • 16 h-Index
20022018
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Proteins Medicine & Life Sciences
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Research Output 2002 2018

  • 13069 Citations
  • 16 h-Index
  • 40 Article
  • 1 Conference contribution
1 Citations

Germline contamination and leakage in whole genome somatic single nucleotide variant detection

Sendorek, D. H., Caloian, C., Ellrott, K., Bare, J. C., Yamaguchi, T. N., Ewing, A. D., Houlahan, K. E., Norman, T. C., Margolin, A. A., Stuart, J. M. & Boutros, P. C., Jan 31 2018, In : BMC Bioinformatics. 19, 1, 28

Research output: Contribution to journalArticle

Nucleotides
Contamination
Leakage
Genome
Genes

Population-level distribution and putative immunogenicity of cancer neoepitopes

Wood, M. A., Paralkar, M., Paralkar, M. P., Nguyen, A., Struck, A. J., Ellrott, K., Margolin, A., Nellore, A. & Thompson, R. F., Apr 13 2018, In : BMC Cancer. 18, 1, 414

Research output: Contribution to journalArticle

Demography
Peptides
Neoplasms
Genome
Atlases
6 Citations

Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

MC3 Working Group & The Cancer Genome Atlas Research Network, Mar 28 2018, In : Cell Systems. 6, 3, p. 271-281.e7

Research output: Contribution to journalArticle

Exome
Mutation
Atlases
Neoplasms
Genomics

A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines

Gönen, M. , Weir, B. A. , Cowley, G. S. , Vazquez, F. , Guan, Y. , Jaiswal, A. , Karasuyama, M. , Uzunangelov, V. , Wang, T. , Tsherniak, A. , Howell, S. , Marbach, D. , Hoff, B. , Norman, T. C. , Airola, A. , Bivol, A. , Bunte, K. , Carlin, D. , Chopra, S. , Deran, A. & 25 others Ellrott, K., Gopalacharyulu, P., Graim, K., Kaski, S., Khan, S. A., Newton, Y., Ng, S., Pahikkala, T., Paull, E., Sokolov, A., Tang, H., Tang, J., Wennerberg, K., Xie, Y., Zhan, X., Zhu, F., Aittokallio, T., Mamitsuka, H., Stuart, J. M., Boehm, J. S., Root, D. E., Xiao, G., Stolovitzky, G., Hahn, W. C. & Margolin, A. A., 2017, (Accepted/In press) In : Cell Systems.

Research output: Contribution to journalArticle

Benchmarking
Cell Line
Genes
Neoplasms
Publications
1 Citations

Prophetic Granger Causality to infer gene regulatory networks

Carlin, D. E., Paull, E. O., Graim, K., Wong, C. K., Bivol, A., Ryabinin, P., Ellrott, K., Sokolov, A. & Stuart, J. M., Dec 1 2017, In : PLoS One. 12, 12, e0170340

Research output: Contribution to journalArticle

Systems Biology
Gene Regulatory Networks
artificial intelligence
Computational Biology
bioinformatics