• 3303 SW Bond Avenue, CH13B, Portland OR 97239

  • 18705 Citations
  • 18 h-Index

Research output per year

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Research Output

Reproducible biomedical benchmarking in the cloud: Lessons from crowd-sourced data challenges

Ellrott, K., Buchanan, A., Creason, A., Mason, M., Schaffter, T., Hoff, B., Eddy, J., Chilton, J. M., Yu, T., Stuart, J. M., Saez-Rodriguez, J., Stolovitzky, G., Boutros, P. C. & Guinney, J., Sep 10 2019, In : Genome biology. 20, 1, 195.

Research output: Contribution to journalArticle

Open Access
  • 2 Scopus citations

    Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection

    ICGC-TCGA DREAM Somatic Mutation Calling Challenge Participants, Nov 6 2018, In : Genome biology. 19, 1, 188.

    Research output: Contribution to journalArticle

  • 8 Scopus citations

    Germline contamination and leakage in whole genome somatic single nucleotide variant detection

    Sendorek, D. H., Caloian, C., Ellrott, K., Bare, J. C., Yamaguchi, T. N., Ewing, A. D., Houlahan, K. E., Norman, T. C., Margolin, A. A., Stuart, J. M. & Boutros, P. C., Jan 31 2018, In : BMC bioinformatics. 19, 1, 28.

    Research output: Contribution to journalArticle

  • 2 Scopus citations

    Population-level distribution and putative immunogenicity of cancer neoepitopes

    Wood, M. A., Paralkar, M., Paralkar, M. P., Nguyen, A., Struck, A. J., Ellrott, K., Margolin, A., Nellore, A. & Thompson, R., Apr 13 2018, In : BMC Cancer. 18, 1, 414.

    Research output: Contribution to journalArticle

  • 11 Scopus citations

    Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

    MC3 Working Group & The Cancer Genome Atlas Research Network, Mar 28 2018, In : Cell Systems. 6, 3, p. 271-281.e7

    Research output: Contribution to journalArticle

  • 103 Scopus citations