Kyle Ellrott

Assistant Professor

  • 14880 Citations
  • 17 h-Index
20022018
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Fingerprint Fingerprint is based on mining the text of the experts' scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.

Proteins Medicine & Life Sciences
Genome Medicine & Life Sciences
Neoplasms Medicine & Life Sciences
Genes Chemical Compounds
proteins Physics & Astronomy
Crowdsourcing Medicine & Life Sciences
Crystal structure Chemical Compounds
Atlases Medicine & Life Sciences

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Research Output 2002 2018

  • 14880 Citations
  • 17 h-Index
  • 42 Article
  • 1 Conference contribution
2 Citations (Scopus)

Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection

ICGC-TCGA DREAM Somatic Mutation Calling Challenge Participants, Nov 6 2018, In : Genome Biology. 19, 1, 1 p.

Research output: Contribution to journalArticle

Crowdsourcing
Benchmarking
tumor
benchmarking
genome
1 Citation (Scopus)

Germline contamination and leakage in whole genome somatic single nucleotide variant detection

Sendorek, D. H., Caloian, C., Ellrott, K., Bare, J. C., Yamaguchi, T. N., Ewing, A. D., Houlahan, K. E., Norman, T. C., Margolin, A., Stuart, J. M. & Boutros, P. C., Jan 31 2018, In : BMC Bioinformatics. 19, 1, 28.

Research output: Contribution to journalArticle

Nucleotides
Contamination
Leakage
Genome
Genes

Population-level distribution and putative immunogenicity of cancer neoepitopes

Wood, M. A., Paralkar, M., Paralkar, M. P., Nguyen, A., Struck, A. J., Ellrott, K., Margolin, A., Nellore, A. & Thompson, R., Apr 13 2018, In : BMC Cancer. 18, 1, 414.

Research output: Contribution to journalArticle

Demography
Peptides
Neoplasms
Genome
Atlases
28 Citations (Scopus)

Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

MC3 Working Group & The Cancer Genome Atlas Research Network, Mar 28 2018, In : Cell Systems. 6, 3, p. 271-281.e7

Research output: Contribution to journalArticle

Exome
Mutation
Atlases
Neoplasms
Genomics

Valection: Design optimization for validation and verification studies

Cooper, C. I., Yao, D., Sendorek, D. H., Yamaguchi, T. N., P'ng, C., Houlahan, K. E., Caloian, C., Fraser, M., Ellrott, K., Margolin, A., Bristow, R. G., Stuart, J. M. & Boutros, P. C., Sep 25 2018, In : BMC Bioinformatics. 19, 1, 339.

Research output: Contribution to journalArticle

Verification and Validation
Validation Studies
Software
Programming Languages
Technology