• 3303 SW Bond Avenue, CH13B, Portland OR 97239

  • 16511 Citations
  • 17 h-Index
20022019
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Fingerprint Dive into the research topics where Kyle Ellrott is active. These topic labels come from the works of this person. Together they form a unique fingerprint.

Proteins Medicine & Life Sciences
Genome Medicine & Life Sciences
Neoplasms Medicine & Life Sciences
Genes Chemical Compounds
proteins Physics & Astronomy
Crowdsourcing Medicine & Life Sciences
Benchmarking Medicine & Life Sciences
Crystal structure Chemical Compounds

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Research Output 2002 2019

  • 16511 Citations
  • 17 h-Index
  • 43 Article
  • 1 Conference contribution
1 Citation (Scopus)

Reproducible biomedical benchmarking in the cloud: Lessons from crowd-sourced data challenges

Ellrott, K., Buchanan, A., Creason, A., Mason, M., Schaffter, T., Hoff, B., Eddy, J., Chilton, J. M., Yu, T., Stuart, J. M., Saez-Rodriguez, J., Stolovitzky, G., Boutros, P. C. & Guinney, J., Sep 10 2019, In : Genome biology. 20, 1, 195.

Research output: Contribution to journalArticle

Open Access
Benchmarking
benchmarking
Software
software
Information Dissemination
3 Citations (Scopus)

Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection

ICGC-TCGA DREAM Somatic Mutation Calling Challenge Participants, Nov 6 2018, In : Genome Biology. 19, 1, 1 p.

Research output: Contribution to journalArticle

Crowdsourcing
Benchmarking
tumor
benchmarking
genome
1 Citation (Scopus)

Germline contamination and leakage in whole genome somatic single nucleotide variant detection

Sendorek, D. H., Caloian, C., Ellrott, K., Bare, J. C., Yamaguchi, T. N., Ewing, A. D., Houlahan, K. E., Norman, T. C., Margolin, A., Stuart, J. M. & Boutros, P. C., Jan 31 2018, In : BMC Bioinformatics. 19, 1, 28.

Research output: Contribution to journalArticle

Nucleotides
Contamination
Leakage
Genome
Genes
2 Citations (Scopus)

Population-level distribution and putative immunogenicity of cancer neoepitopes

Wood, M. A., Paralkar, M., Paralkar, M. P., Nguyen, A., Struck, A. J., Ellrott, K., Margolin, A., Nellore, A. & Thompson, R., Apr 13 2018, In : BMC Cancer. 18, 1, 414.

Research output: Contribution to journalArticle

Demography
Peptides
Neoplasms
Genome
Atlases
52 Citations (Scopus)

Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

MC3 Working Group & The Cancer Genome Atlas Research Network, Mar 28 2018, In : Cell Systems. 6, 3, p. 271-281.e7

Research output: Contribution to journalArticle

Exome
Mutation
Atlases
Neoplasms
Genomics