Kyle Ellrott

Assistant Professor

  • 13672 Citations
  • 16 h-Index
20022018
If you made any changes in Pure, your changes will be visible here soon.

Fingerprint Fingerprint is based on mining the text of the experts' scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.

Proteins Medicine & Life Sciences
Genome Medicine & Life Sciences
proteins Physics & Astronomy
Neoplasms Medicine & Life Sciences
Genes Chemical Compounds
Crystal structure Chemical Compounds
Atlases Medicine & Life Sciences
Crowdsourcing Medicine & Life Sciences

Network Recent external collaboration on country level. Dive into details by clicking on the dots.

Research Output 2002 2018

  • 13672 Citations
  • 16 h-Index
  • 41 Article
  • 1 Conference contribution
1 Citations

Germline contamination and leakage in whole genome somatic single nucleotide variant detection

Sendorek, D. H., Caloian, C., Ellrott, K., Bare, J. C., Yamaguchi, T. N., Ewing, A. D., Houlahan, K. E., Norman, T. C., Margolin, A. A., Stuart, J. M. & Boutros, P. C., Jan 31 2018, In : BMC Bioinformatics. 19, 1, 28.

Research output: Contribution to journalArticle

Nucleotides
Contamination
Leakage
Genome
Genes

Population-level distribution and putative immunogenicity of cancer neoepitopes

Wood, M. A., Paralkar, M., Paralkar, M. P., Nguyen, A., Struck, A. J., Ellrott, K., Margolin, A., Nellore, A. & Thompson, R. F., Apr 13 2018, In : BMC Cancer. 18, 1, 414.

Research output: Contribution to journalArticle

Demography
Peptides
Neoplasms
Genome
Atlases
13 Citations

Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

MC3 Working Group & The Cancer Genome Atlas Research Network, Mar 28 2018, In : Cell Systems. 6, 3, p. 271-281.e7

Research output: Contribution to journalArticle

Exome
Mutation
Atlases
Neoplasms
Genomics

Valection: Design optimization for validation and verification studies

Cooper, C. I., Yao, D., Sendorek, D. H., Yamaguchi, T. N., P'ng, C., Houlahan, K. E., Caloian, C., Fraser, M., Ellrott, K., Margolin, A., Bristow, R. G., Stuart, J. M. & Boutros, P. C., Sep 25 2018, In : BMC bioinformatics. 19, 1, 339.

Research output: Contribution to journalArticle

Gene encoding
DNA sequences
Set theory
Computer programming languages
Testing
1 Citations

A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines

Gönen, M., Weir, B. A., Cowley, G. S., Vazquez, F., Guan, Y., Jaiswal, A., Karasuyama, M., Uzunangelov, V., Wang, T., Tsherniak, A., Howell, S., Marbach, D., Hoff, B., Norman, T. C., Airola, A., Bivol, A., Bunte, K., Carlin, D., Chopra, S., Deran, A. & 25 othersEllrott, K., Gopalacharyulu, P., Graim, K., Kaski, S., Khan, S. A., Newton, Y., Ng, S., Pahikkala, T., Paull, E., Sokolov, A., Tang, H., Tang, J., Wennerberg, K., Xie, Y., Zhan, X., Zhu, F., Aittokallio, T., Mamitsuka, H., Stuart, J. M., Boehm, J. S., Root, D. E., Xiao, G., Stolovitzky, G., Hahn, W. C. & Margolin, A. A., 2017, (Accepted/In press) In : Cell Systems.

Research output: Contribution to journalArticle

Benchmarking
Cell Line
Genes
Neoplasms
Publications