Kyle Ellrott

Assistant Professor

  • 12584 Citations
  • 16 h-Index
20022018
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Proteins Medicine & Life Sciences
Genome Medicine & Life Sciences
proteins Physics & Astronomy
Neoplasms Medicine & Life Sciences
Genes Chemical Compounds
Crystal structure Chemical Compounds
Crowdsourcing Medicine & Life Sciences
Atlases Medicine & Life Sciences

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Research Output 2002 2018

  • 12584 Citations
  • 16 h-Index
  • 39 Article
  • 1 Conference contribution

Germline contamination and leakage in whole genome somatic single nucleotide variant detection

Sendorek, D. H., Caloian, C., Ellrott, K., Bare, J. C., Yamaguchi, T. N., Ewing, A. D., Houlahan, K. E., Norman, T. C., Margolin, A. A., Stuart, J. M. & Boutros, P. C. Jan 31 2018 In : BMC Bioinformatics. 19, 1, 28

Research output: Contribution to journalArticle

Nucleotides
Contamination
Leakage
Genome
Genes

Population-level distribution and putative immunogenicity of cancer neoepitopes

Wood, M. A., Paralkar, M., Paralkar, M. P., Nguyen, A., Struck, A. J., Ellrott, K., Margolin, A., Nellore, A. & Thompson, R. F. Apr 13 2018 In : BMC Cancer. 18, 1, 414

Research output: Contribution to journalArticle

Demography
Peptides
Neoplasms
Genome
Atlases

A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines

Gönen, M. , Weir, B. A. , Cowley, G. S. , Vazquez, F. , Guan, Y. , Jaiswal, A. , Karasuyama, M. , Uzunangelov, V. , Wang, T. , Tsherniak, A. , Howell, S. , Marbach, D. , Hoff, B. , Norman, T. C. , Airola, A. , Bivol, A. , Bunte, K. , Carlin, D. , Chopra, S. , Deran, A. & 25 others Ellrott, K., Gopalacharyulu, P., Graim, K., Kaski, S., Khan, S. A., Newton, Y., Ng, S., Pahikkala, T., Paull, E., Sokolov, A., Tang, H., Tang, J., Wennerberg, K., Xie, Y., Zhan, X., Zhu, F., Aittokallio, T., Mamitsuka, H., Stuart, J. M., Boehm, J. S., Root, D. E., Xiao, G., Stolovitzky, G., Hahn, W. C. & Margolin, A. A. 2017 (Accepted/In press) In : Cell Systems.

Research output: Contribution to journalArticle

Benchmarking
Cell Line
Genes
Neoplasms
Publications

Prophetic Granger Causality to infer gene regulatory networks

Carlin, D. E., Paull, E. O., Graim, K., Wong, C. K., Bivol, A., Ryabinin, P., Ellrott, K., Sokolov, A. & Stuart, J. M. Dec 1 2017 In : PLoS ONE. 12, 12, e0170340

Research output: Contribution to journalArticle

Systems Biology
Gene Regulatory Networks
artificial intelligence
Computational Biology
bioinformatics
4 Citations

TumorMap: Exploring the molecular similarities of cancer samples in an interactive portal

Newton, Y., Novak, A. M., Swatloski, T., McColl, D. C., Chopra, S., Graim, K., Weinstein, A. S., Baertsch, R., Salama, S. R., Ellrott, K., Chopra, M., Goldstein, T. C., Haussler, D., Morozova, O. & Stuart, J. M. Nov 1 2017 In : Cancer Research. 77, 21, p. e111-e114

Research output: Contribution to journalArticle

Neoplasms
Atlases
Genome
Technology