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Emek Demir

Assistant Professor

  • 2147 Citations
  • 18 h-Index
20022018
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Pathway Mathematics
Software Medicine & Life Sciences
Systems Biology Medicine & Life Sciences
Language Medicine & Life Sciences
Databases Medicine & Life Sciences
Visualization Chemical Compounds
Computational Biology Medicine & Life Sciences
Proteins Medicine & Life Sciences

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Research Output 2002 2018

  • 2147 Citations
  • 18 h-Index
  • 35 Article
  • 1 Conference contribution

Large-scale automated machine reading discovers new cancer-driving mechanisms

Valenzuela-Escárcega, M. A., Babur, O., Hahn-Powell, G., Bell, D., Hicks, T., Noriega-Atala, E., Wang, X., Surdeanu, M., Demir, E. & Morrison, C. T., Jan 1 2018, In : Database : the journal of biological databases and curation. 2018

Research output: Contribution to journal › Article

Search engines
Reading
Throughput
Biological Phenomena
Search Engine
1 Citations

Assessment of roles for the rho-specific guanine nucleotide dissociation inhibitor Ly-GDI in platelet function: A spatial systems approach

Ngo, A. T. P., Thierheimer, M. L. D., Babur, Ö., Rocheleau, A. D., Huang, T., Pang, J., Rigg, R. A., Mitrugno, A., Theodorescu, D., Burchard, J., Nan, X., Demir, E., McCarty, O. J. T. & Aslan, J. E., Apr 7 2017, In : American Journal of Physiology - Cell Physiology. 312, 4, p. C527-C536

Research output: Contribution to journal › Article

rho-Specific Guanine Nucleotide Dissociation Inhibitors
Guanine Nucleotide Dissociation Inhibitors
Systems Analysis
Blood Platelets
Protein Kinase C

Collaborative workspaces for pathway curation

Durupinar-Babur, F., Siper, M. C., Dogrusoz, U., Bahceci, I., Babur, O. & Demir, E., 2016, In : CEUR Workshop Proceedings. 1747

Research output: Contribution to journal › Article

Application programming interfaces (API)
108 Citations

Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome

Kusebauch, U., Campbell, D. S., Deutsch, E. W., Chu, C. S., Spicer, D. A., Brusniak, M. Y., Slagel, J., Sun, Z., Stevens, J., Grimes, B., Shteynberg, D., Hoopmann, M. R., Blattmann, P., Ratushny, A. V., Rinner, O., Picotti, P., Carapito, C., Huang, C. Y., Kapousouz, M., Lam, H. & 7 othersTran, T., Demir, E., Aitchison, J. D., Sander, C., Hood, L., Aebersold, R. & Moritz, R. L., Jul 28 2016, In : Cell. 166, 3, p. 766-778 13 p.

Research output: Contribution to journal › Article

Proteome
Assays
docetaxel
Peptides
Proteins
5 Citations

PaxtoolsR: Pathway analysis in R using Pathway Commons

Luna, A., Babur, Ö., Aksoy, B. A., Demir, E. & Sander, C., Apr 15 2016, In : Bioinformatics. 32, 8, p. 1262-1264 3 p.

Research output: Contribution to journal › Article

Merging
Pathway
Language
Web Services
Datasets