Emek Demir

Assistant Professor

Assistant Professor, Biomedical Engineering

Emaildemire@ohsu.edu

2027 Citations
16 h-Index

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Pathway Mathematics

Software Medicine & Life Sciences

Systems Biology Medicine & Life Sciences

Language Medicine & Life Sciences

Databases Medicine & Life Sciences

Visualization Chemical Compounds

Computational Biology Medicine & Life Sciences

Proteins Medicine & Life Sciences

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Research Output 2002 2017

2027 Citations
16 h-Index
34 Article
1 Conference contribution

1 Citations

Assessment of roles for the rho-specific guanine nucleotide dissociation inhibitor Ly-GDI in platelet function: A spatial systems approach

Ngo, A. T. P., Thierheimer, M. L. D., Babur, Ö., Rocheleau, A. D., Huang, T., Pang, J., Rigg, R. A., Mitrugno, A., Theodorescu, D., Burchard, J., Nan, X., Demir, E., McCarty, O. J. T. & Aslan, J. E. Apr 7 2017 In : American Journal of Physiology - Cell Physiology. 312, 4, p. C527-C536

Research output: Contribution to journal › Article

rho-Specific Guanine Nucleotide Dissociation Inhibitors

Guanine Nucleotide Dissociation Inhibitors

Systems Analysis

Blood Platelets

Protein Kinase C

Collaborative workspaces for pathway curation

Durupinar-Babur, F., Siper, M. C., Dogrusoz, U., Bahceci, I., Babur, O. & Demir, E. 2016 In : CEUR Workshop Proceedings. 1747

Research output: Contribution to journal › Article

Application programming interfaces (API)

90 Citations

Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome

Kusebauch, U. , Campbell, D. S. , Deutsch, E. W. , Chu, C. S. , Spicer, D. A. , Brusniak, M. Y. , Slagel, J. , Sun, Z. , Stevens, J. , Grimes, B. , Shteynberg, D. , Hoopmann, M. R. , Blattmann, P. , Ratushny, A. V. , Rinner, O. , Picotti, P. , Carapito, C. , Huang, C. Y. , Kapousouz, M. , Lam, H. & 7 others Tran, T., Demir, E., Aitchison, J. D., Sander, C., Hood, L., Aebersold, R. & Moritz, R. L. Jul 28 2016 In : Cell. 166, 3, p. 766-778 13 p.

Research output: Contribution to journal › Article

Proteome

Assays

docetaxel

Peptides

Proteins

5 Citations

PaxtoolsR: Pathway analysis in R using Pathway Commons

Luna, A., Babur, Ö., Aksoy, B. A., Demir, E. & Sander, C. Apr 15 2016 In : Bioinformatics. 32, 8, p. 1262-1264 3 p.

Research output: Contribution to journal › Article

Merging

Pathway

Language

Web Services

Datasets

13 Citations

Crosstalk between signaling pathways provided by single and multiple protein phosphorylation sites

Nishi, H., Demir, E. & Panchenko, A. R. Jan 30 2015 In : Journal of Molecular Biology. 427, 2, p. 511-520 10 p.

Research output: Contribution to journal › Article

Phosphorylation

Proteins

Phosphotransferases

Protein Stability

Computer Simulation