Emek Demir

Assistant Professor

  • 2027 Citations
  • 16 h-Index
20022017
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Pathway Mathematics
Software Medicine & Life Sciences
Systems Biology Medicine & Life Sciences
Language Medicine & Life Sciences
Databases Medicine & Life Sciences
Visualization Chemical Compounds
Computational Biology Medicine & Life Sciences
Proteins Medicine & Life Sciences

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Research Output 2002 2017

  • 2027 Citations
  • 16 h-Index
  • 34 Article
  • 1 Conference contribution
1 Citations

Assessment of roles for the rho-specific guanine nucleotide dissociation inhibitor Ly-GDI in platelet function: A spatial systems approach

Ngo, A. T. P., Thierheimer, M. L. D., Babur, Ö., Rocheleau, A. D., Huang, T., Pang, J., Rigg, R. A., Mitrugno, A., Theodorescu, D., Burchard, J., Nan, X., Demir, E., McCarty, O. J. T. & Aslan, J. E. Apr 7 2017 In : American Journal of Physiology - Cell Physiology. 312, 4, p. C527-C536

Research output: Contribution to journalArticle

rho-Specific Guanine Nucleotide Dissociation Inhibitors
Guanine Nucleotide Dissociation Inhibitors
Systems Analysis
Blood Platelets
Protein Kinase C

Collaborative workspaces for pathway curation

Durupinar-Babur, F., Siper, M. C., Dogrusoz, U., Bahceci, I., Babur, O. & Demir, E. 2016 In : CEUR Workshop Proceedings. 1747

Research output: Contribution to journalArticle

Application programming interfaces (API)
90 Citations

Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome

Kusebauch, U. , Campbell, D. S. , Deutsch, E. W. , Chu, C. S. , Spicer, D. A. , Brusniak, M. Y. , Slagel, J. , Sun, Z. , Stevens, J. , Grimes, B. , Shteynberg, D. , Hoopmann, M. R. , Blattmann, P. , Ratushny, A. V. , Rinner, O. , Picotti, P. , Carapito, C. , Huang, C. Y. , Kapousouz, M. , Lam, H. & 7 others Tran, T., Demir, E., Aitchison, J. D., Sander, C., Hood, L., Aebersold, R. & Moritz, R. L. Jul 28 2016 In : Cell. 166, 3, p. 766-778 13 p.

Research output: Contribution to journalArticle

Proteome
Assays
docetaxel
Peptides
Proteins
5 Citations

PaxtoolsR: Pathway analysis in R using Pathway Commons

Luna, A., Babur, Ö., Aksoy, B. A., Demir, E. & Sander, C. Apr 15 2016 In : Bioinformatics. 32, 8, p. 1262-1264 3 p.

Research output: Contribution to journalArticle

Merging
Pathway
Language
Web Services
Datasets
13 Citations

Crosstalk between signaling pathways provided by single and multiple protein phosphorylation sites

Nishi, H., Demir, E. & Panchenko, A. R. Jan 30 2015 In : Journal of Molecular Biology. 427, 2, p. 511-520 10 p.

Research output: Contribution to journalArticle

Phosphorylation
Proteins
Phosphotransferases
Protein Stability
Computer Simulation