Dongseok Choi

Professor

  • 3729 Citations
  • 28 h-Index
19972020

Research output per year

If you made any changes in Pure these will be visible here soon.

Research Output

Filter
Article
2020

Children with autism spectrum disorder: Pilot studies examining the salivary microbiome and implications for gut metabolism and social behavior

Forsyth, A., Raslan, K., Lyashenko, C., Bona, S., Snow, M., Khor, B., Herrman, E., Ortiz, S., Choi, D., Maier, T. & Machida, C. A., Mar 2020, In : Human Microbiome Journal. 15, 100066.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Magnesium-Dependent Promotion of H2O2 Production Increases Ecological Competitiveness of Oral Commensal Streptococci

Cheng, X., Redanz, S., Treerat, P., Qin, H., Choi, D., Zhou, X., Xu, X., Merritt, J. & Kreth, J., Jul 1 2020, In : Journal of dental research. 99, 7, p. 847-854 8 p.

Research output: Contribution to journalArticle

Mechanotransduction-Dependent Control of Stereocilia Dimensions and Row Identity in Inner Hair Cells

Krey, J. F., Chatterjee, P., Dumont, R. A., O'Sullivan, M., Choi, D., Bird, J. E. & Barr-Gillespie, P. G., Feb 3 2020, In : Current Biology. 30, 3, p. 442-454.e7

Research output: Contribution to journalArticle

2 Scopus citations

Noise accumulation in high dimensional classification and total signal index

Elman, M. R., Minnier, J., Chang, X. & Choi, D., Jan 1 2020, In : Journal of Machine Learning Research. 21

Research output: Contribution to journalArticle

RNA-Seq of human whole blood: Evaluation of globin RNA depletion on Ribo-Zero library method

Harrington, C. A., Fei, S. S., Minnier, J., Carbone, L., Searles, R., Davis, B. A., Ogle, K., Planck, S., Rosenbaum, J. J. & Choi, D., Dec 1 2020, In : Scientific Reports. 10, 1, 6271.

Research output: Contribution to journalArticle

Open Access
2019

Effect of various agitation methods on adhesive layer formation of hema-free universal dentin adhesive

Jang, J. H., Jeon, B. K., Mo, S. Y., Park, M., Choi, D., Choi, K. K. & Kim, D. S., Jan 1 2019, In : Dental materials journal. 38, 1, p. 101-106 6 p.

Research output: Contribution to journalArticle

Open Access

Intratympanically Delivered Steroids Impact Thousands More Inner Ear Genes Than Systemic Delivery

Trune, D. R., Shives, K. D., Hausman, F., Kempton, J. B., MacArthur, C. J. & Choi, D., Jun 1 2019, In : Annals of Otology, Rhinology and Laryngology. 128, 6_suppl, p. 134S-138S

Research output: Contribution to journalArticle

Sex-specific differences in the salivary microbiome of caries-active children

Ortiz, S., Herrman, E., Lyashenko, C., Purcell, A., Raslan, K., Khor, B., Snow, M., Forsyth, A., Choi, D., Maier, T. & Machida, C. A., Jan 1 2019, In : Journal of Oral Microbiology. 11, 1, 1653124.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Single-cell proteomics reveals changes in expression during hair-cell development

Zhu, Y., Scheibinger, M., Ellwanger, D. C., Krey, J. F., Choi, D., Kelly, R. T., Heller, S. & Barr-Gillespie, P. G., Nov 2019, In : eLife. 8, e50777.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations
2018

Accuracy and reliability of eye-based vs quadrant-based diagnosis of plus disease in retinopathy of prematurity

Imaging and Informatics in Retinopathy of Prematurity (i-ROP) Research Consortium, Jun 2018, In : JAMA ophthalmology. 136, 6, p. 648-655 8 p.

Research output: Contribution to journalArticle

7 Scopus citations

Data Descriptor: Mass spectrometry quantitation of proteins from small pools of developing auditory and vestibular cells

Krey, J. F., Scheffer, D. I., Choi, D., Reddy, A., David, L. L., Corey, D. P. & Barr-Gillespie, P. G., Jul 17 2018, In : Scientific Data. 5, 180128.

Research output: Contribution to journalArticle

1 Scopus citations

Effect of bioactive glass-containing resin composite on dentin remineralization

Jang, J. H., Lee, M. G., Ferracane, J., Davis, H., Bae, H. E., Choi, D. & Kim, D. S., Jan 1 2018, (Accepted/In press) In : Journal of Dentistry.

Research output: Contribution to journalArticle

4 Scopus citations
2017

A Model for Link Pruning to Establish Correctly Polarized and Oriented Tip Links in Hair Bundles

Tompkins, N., Spinelli, K. J., Choi, D. & Barr-Gillespie, P., Oct 17 2017, In : Biophysical Journal. 113, 8, p. 1868-1881 14 p.

Research output: Contribution to journalArticle

1 Scopus citations

Gene expression profiling and heterogeneity of nonspecific orbital inflammation affecting the lacrimal gland

Rosenbaum, J. T., Choi, D., Harrington, C. A., Wilson, D. J., Grossniklaus, H. E., Sibley, C. H., Salek, S. S., Ng, J. D., Dailey, R. A., Steele, E. A., Hayek, B., Craven, C. M., Edward, D. P., Maktabi, A. M. Y., Al Hussain, H., White, V. A., Dolman, P. J., Czyz, C. N., Foster, J. A., Harris, G. J. & 13 others, Bee, Y. S., Tse, D. T., Alabiad, C. R., Dubovy, S. R., Kazim, M., Selva, D., Yeatts, R. P., Korn, B. S., Kikkawa, D. O., Silkiss, R. Z., Sivak-Callcott, J. A., Stauffer, P. & Planck, S. R., Nov 2017, In : JAMA ophthalmology. 135, 11, p. 1156-1162 7 p.

Research output: Contribution to journalArticle

3 Scopus citations

Mortality after respiratory isolation of nontuberculous mycobacteria a comparison of patients who did and did not meet disease criteria

Novosad, S. A., Henkle, E., Schafer, S., Hedberg, K., Ku, J., Siegel, S. A. R., Choi, D., Slatore, C. & Winthrop, K. L., Jul 2017, In : Annals of the American Thoracic Society. 14, 7, p. 1112-1119 8 p.

Research output: Contribution to journalArticle

14 Scopus citations
2016

Annexin A5 is the Most Abundant Membrane-Associated Protein in Stereocilia but is Dispensable for Hair-Bundle Development and Function

Krey, J. F., Drummond, M., Foster, S., Porsov, E., Vijayakumar, S., Choi, D., Friderici, K., Jones, S. M., Nuttall, A. L. & Barr-Gillespie, P. G., Jun 2 2016, In : Scientific Reports. 6, 27221.

Research output: Contribution to journalArticle

4 Scopus citations

Oral microbiota species in acute apical endodontic abscesses

George, N., Flamiatos, E., Kawasaki, K., Kim, N., Carriere, C., Phan, B., Joseph, R., Strauss, S., Kohli, R., Choi, D., Craig Baumgartner, J., Sedgley, C., Maier, T. & Machida, C. A., 2016, In : Journal of Oral Microbiology. 8, 1, 30989.

Research output: Contribution to journalArticle

10 Scopus citations

PDZD7-MYO7A complex identified in enriched stereocilia membranes

Morgan, C. P., Krey, J. F., Grati, M., Zhao, B., Fallen, S., Kannan-Sundhari, A., Liu, X. Z., Choi, D., Müller, U. & Barr-Gillespie, P. G., Aug 15 2016, In : eLife. 5, AUGUST, e18312.

Research output: Contribution to journalArticle

15 Scopus citations

Plastin 1 widens stereocilia by transforming actin filament packing from hexagonal to liquid

Krey, J. F., Krystofiak, E. S., Dumont, R. A., Vijayakumar, S., Choi, D., Rivero, F., Kachar, B., Jones, S. M. & Barr-Gillespie, P. G., 2016, In : Journal of Cell Biology. 215, 4, p. 467-482 16 p.

Research output: Contribution to journalArticle

18 Scopus citations

Stereocilia-staircase spacing is influenced by myosin III motors and their cargos espin-1 and espin-like

Ebrahim, S., Avenarius, M. R., Grati, M., Krey, J. F., Windsor, A. M., Sousa, A. D., Ballesteros, A., Cui, R., Millis, B. A., Salles, F. T., Baird, M. A., Davidson, M. W., Jones, S. M., Choi, D., Dong, L., Raval, M. H., Yengo, C. M., Barr-Gillespie, P. G. & Kachar, B., Mar 1 2016, In : Nature communications. 7, 10833.

Research output: Contribution to journalArticle

23 Scopus citations

Test-retest variability of functional and structural parameters in patients with stargardt disease participating in the SAR422459 gene therapy trial

Parker, M. A., Choi, D., Erker, L. R., Pennesi, M. E., Yang, P., Chegarnov, E. N., Steinkamp, P. N., Schlechter, C. L., Dhaenens, C. M., Mohand-Said, S., Audo, I., Sahel, J., Weleber, R. G. & Wilson, D. J., Sep 2016, In : Translational Vision Science and Technology. 5, 5, 10.

Research output: Contribution to journalArticle

19 Scopus citations
2015

Determinants of patient satisfaction in an academic rheumatology practice

Ku, J. H., Danve, A., Pang, H., Choi, D. & Rosenbaum, J. T., Aug 6 2015, In : Journal of Clinical Rheumatology. 21, 5, p. 256-262 7 p.

Research output: Contribution to journalArticle

5 Scopus citations

Fibrosis, gene expression and orbital inflammatory disease

Rosenbaum, J. T., Choi, D., Wilson, D. J., Grossniklaus, H. E., Harrington, C. A., Dailey, R. A., Ng, J. D., Steele, E. A., Czyz, C. N., Foster, J. A., Tse, D., Alabiad, C., Dubovy, S., Parekh, P., Harris, G. J., Kazim, M., Patel, P., White, V., Dolman, P., Edward, D. P. & 8 others, Alkatan, H., Hussain, H., Selva, D., Yeatts, P., Korn, B., Kikkawa, D., Stauffer, P. & Planck, S. R., Oct 1 2015, In : British Journal of Ophthalmology. 99, 10, p. 1424-1429 6 p.

Research output: Contribution to journalArticle

9 Scopus citations

Hair-bundle proteomes of avian and mammalian inner-ear utricles

Wilmarth, P. A., Krey, J. F., Shin, J. B., Choi, D., David, L. L. & Barr-Gillespie, P. G., Dec 8 2015, In : Scientific Data. 2, 150074.

Research output: Contribution to journalArticle

10 Scopus citations

Molecular diagnosis of orbital inflammatory disease

The Orbital Disease Consortium, Apr 1 2015, In : Experimental and Molecular Pathology. 98, 2, p. 225-229 5 p.

Research output: Contribution to journalArticle

14 Scopus citations

Orbital pseudotumor can be a localized form of granulomatosis with polyangiitis as revealed by gene expression profiling

Rosenbaum, J. T., Choi, D., Wilson, D. J., Grossniklaus, H. E., Harrington, C. A., Sibley, C. H., Dailey, R. A., Ng, J. D., Steele, E. A., Czyz, C. N., Foster, J. A., Tse, D., Alabiad, C., Dubovy, S., Parekh, P. K., Harris, G. J., Kazim, M., Patel, P. J., White, V. A., Dolman, P. J. & 9 others, Korn, B. S., Kikkawa, D. O., Edward, D. P., Alkatan, H. M., al-Hussain, H., Yeatts, R. P., Selva, D., Stauffer, P. & Planck, S. R., Oct 1 2015, In : Experimental and Molecular Pathology. 99, 2, p. 271-278 8 p.

Research output: Contribution to journalArticle

15 Scopus citations

Parallel gene expression changes in sarcoidosis involving the lacrimal gland, orbital tissue, or blood

Rosenbaum, J. T., Choi, D., Wilson, D. J., Grossniklaus, H. E., Harrington, C. A., Sibley, C. H., Dailey, R. A., Ng, J. D., Steele, E. A., Czyz, C. N., Foster, J. A., Tse, D., Alabiad, C., Dubovy, S., Parekh, P., Harris, G. J., Kazim, M., Patel, P., White, V., Dolman, P. & 9 others, Korn, B. S., Kikkawa, D., Edward, D. P., Alkatan, H., Al-Hussain, H., Yeatts, R. P., Selva, D., Stauffer, P. & Planck, S. R., Jul 1 2015, In : JAMA ophthalmology. 133, 7, p. 770-777 8 p.

Research output: Contribution to journalArticle

11 Scopus citations

Promoting Resident Wellness: Evaluation of a Time-Off Policy to Increase Residents' Utilization of Health Care Services

Cedfeldt, A. S., Bower, E., Flores, C., Brunett, P., Choi, D. & Girard, D. E., Jan 1 2015, In : Academic Medicine. 90, 5, p. 678-683 6 p.

Research output: Contribution to journalArticle

16 Scopus citations

The proteome of mouse vestibular hair bundles over development

Krey, J. F., Sherman, N. E., Jeffery, E. D., Choi, D. & Barr-Gillespie, P., Sep 15 2015, In : Scientific data. 2, 150047.

Research output: Contribution to journalArticle

20 Scopus citations

The role of the immune response in the pathogenesis of thyroid eye disease: A reassessment

Rosenbaum, J. T., Choi, D., Wong, A., Wilson, D. J., Grossniklaus, H. E., Harrington, C. A., Dailey, R. A., Ng, J. D., Steele, E. A., Czyz, C. N., Foster, J. A., Tse, D., Alabiad, C., Dubovy, S., Parekh, P. K., Harris, G. J., Kazim, M., Patel, P. J., White, V. A., Dolman, P. J. & 9 others, Edward, D. P., Alkatan, H. M., Al Hussain, H., Selva, D., Yeatts, R. P., Korn, B. S., Kikkawa, D. O., Stauffer, P. & Planck, S. R., Sep 15 2015, In : PloS one. 10, 9, e0137654.

Research output: Contribution to journalArticle

6 Scopus citations

Use of a voice and video internet technology as an alternative to in-person urgent care clinic visits*

Brunett, P. H., DiPiero, A., Flores, C., Choi, D. & Kum, H., Jun 6 2015, In : Journal of telemedicine and telecare. 21, 4, p. 219-226 8 p.

Research output: Contribution to journalArticle

3 Scopus citations
2014

Accurate label-free protein quantitation with high- and low-resolution mass spectrometers

Krey, J. F., Wilmarth, P. A., Shin, J. B., Klimek, J., Sherman, N. E., Jeffery, E. D., Choi, D., David, L. L. & Barr-Gillespie, P. G., Feb 7 2014, In : Journal of Proteome Research. 13, 2, p. 1034-1044 11 p.

Research output: Contribution to journalArticle

57 Scopus citations

Correlation of actin crosslinker and capper expression levels with stereocilia growth phases

Avenarius, M. R., Saylor, K. W., Lundeberg, M. R., Wilmarth, P. A., Shin, J. B., Spinelli, K. J., Pagana, J. M., Andrade, L., Kachar, B., Choi, D., David, L. L. & Barr-Gillespie, P. G., Feb 1 2014, In : Molecular and Cellular Proteomics. 13, 2, p. 606-620 15 p.

Research output: Contribution to journalArticle

18 Scopus citations

Electronic health record impact on productivity and efficiency in an academic pediatric ophthalmology practice

Redd, T. K., Read-Brown, S., Choi, D., Yackel, T. R., Tu, D. C. & Chiang, M. F., Dec 1 2014, In : Journal of AAPOS. 18, 6, p. 584-589 6 p.

Research output: Contribution to journalArticle

9 Scopus citations

Impact of an electronic health record operating room management system in ophthalmology on documentation time, surgical volume, and staffing

Sanders, D. S., Read-Brown, S., Tu, D. C., Lambert, W. E., Choi, D., Almario, B. M., Yackel, T. R., Brown, A. S. & Chiang, M. F., May 2014, In : JAMA ophthalmology. 132, 5, p. 586-592 7 p.

Research output: Contribution to journalArticle

18 Scopus citations

Lgg4 immunostaining and its implications in orbital inflammatory disease

Wong, A. J., Planck, S. R., Choi, D., Harrington, C. A., Troxell, M. L., Houghton, D. C., Stauffer, P., Wilson, D. J., Grossniklaus, H. E., Dailey, R. A., Ng, J. D., Steele, E. A., Harris, G. J., Czyz, C., Foster, J. A., White, V. A., Dolman, P. J., Kazim, M., Patel, P. J., Edward, D. P. & 7 others, Katan, H. A., Hussain, H. A., Selva, D., Yeatts, R. P., Korn, B. S., Kikkawa, D. O. & Rosenbaum, J. T., Oct 10 2014, In : PloS one. 9, 10, e10984.

Research output: Contribution to journalArticle

28 Scopus citations
13 Scopus citations

Risk factors for retinopathy of prematurity: insights from outlier infants

Port, A. D., Chan, R. V. P., Ostmo, S., Choi, D. & Chiang, M. F., Jan 1 2014, In : Graefe's Archive for Clinical and Experimental Ophthalmology. 252, 10, p. 1669-1677 9 p.

Research output: Contribution to journalArticle

14 Scopus citations

The course of retinal vasculitis

Ali, A., Ku, J. H., Suhler, E. B., Choi, D. & Rosenbaum, J. T., Jun 2014, In : British Journal of Ophthalmology. 98, 6, p. 785-789 5 p.

Research output: Contribution to journalArticle

14 Scopus citations
2013
20 Scopus citations

A high-resolution analysis of process improvement: Use of quantile regression for wait time

Choi, D., Hoffman, K. A., Kim, M. O. & McCarty, D., Feb 1 2013, In : Health Services Research. 48, 1, p. 333-347 15 p.

Research output: Contribution to journalArticle

7 Scopus citations
32 Scopus citations

Molecular architecture of the chick vestibular hair bundle

Shin, J. B., Krey, J. F., Hassan, A., Metlagel, Z., Tauscher, A. N., Pagana, J. M., Sherman, N. E., Jeffery, E. D., Spinelli, K. J., Zhao, H., Wilmarth, P. A., Choi, D., David, L. L., Auer, M. & Barr-Gillespie, P. G., Mar 1 2013, In : Nature Neuroscience. 16, 3, p. 365-374 10 p.

Research output: Contribution to journalArticle

90 Scopus citations

Mycobacterial diseases and antitumour necrosis factor therapy in USA

Winthrop, K. L., Baxter, R., Liu, L., Varley, C. D., Curtis, J. R., Baddley, J. W., McFarland, B., Austin, D., Radcliffe, L., Suhler, E. B., Choi, D., Rosenbaum, J. T. & Herrinton, L. J., Jan 1 2013, In : Annals of the rheumatic diseases. 72, 1, p. 37-42 6 p.

Research output: Contribution to journalArticle

146 Scopus citations

Otitis Media Impacts Hundreds of Mouse Middle and Inner Ear Genes

MacArthur, C. J., Hausman, F., Kempton, J. B., Choi, D. & Trune, D. R., Oct 4 2013, In : PloS one. 8, 10, e75213.

Research output: Contribution to journalArticle

21 Scopus citations

Patient and provider comfort discussing substance use

Ray, M. K., Beach, M. C., Nicolaidis, C., Choi, D., Saha, S. & Korthuis, P. T., Feb 1 2013, In : Family medicine. 45, 2, p. 109-117 9 p.

Research output: Contribution to journalArticle

17 Scopus citations
6 Scopus citations
2012

A comparison between physicians and demographically similar peers in accessing personal health care

Cedfeldt, A. S., Bower, E. A., Grady-Weliky, T. A., Flores, C., Girard, D. E. & Choi, D., Mar 2012, In : Academic Medicine. 87, 3, p. 327-331 5 p.

Research output: Contribution to journalArticle

5 Scopus citations

Digenic inheritance of deafness caused by 8J allele of myosin-VIIA and mutations in other Usher I genes

Zheng, Q. Y., Scarborough, J. D., Zheng, Y., Yu, H., Choi, D. & Gillespie, P. G., Jun 2012, In : Human molecular genetics. 21, 11, p. 2588-2598 11 p., dds084.

Research output: Contribution to journalArticle

14 Scopus citations