Abhinav Nellore

Assistant Professor

  • 1653 Citations
  • 16 h-Index
20032019
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Research Output 2003 2019

  • 1653 Citations
  • 16 h-Index
  • 25 Article
  • 2 Letter
  • 1 Comment/debate
  • 1 Review article
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Article
2018
6 Citations (Scopus)

Population-level distribution and putative immunogenicity of cancer neoepitopes

Wood, M. A., Paralkar, M., Paralkar, M. P., Nguyen, A., Struck, A. J., Ellrott, K., Margolin, A., Nellore, A. & Thompson, R., Apr 13 2018, In : BMC Cancer. 18, 1, 414.

Research output: Contribution to journalArticle

Demography
Peptides
Neoplasms
Genome
Atlases
5 Citations (Scopus)

Snaptron: Querying splicing patterns across tens of thousands of RNA-seq samples

Wilks, C., Gaddipati, P., Nellore, A. & Langmead, B., Jan 1 2018, In : Bioinformatics. 34, 1, p. 114-116 3 p.

Research output: Contribution to journalArticle

RNA
Exons
Query
RNA Sequence Analysis
Search Engine
2017
9 Citations (Scopus)

Flexible expressed region analysis for RNA-seq with derfinder

Collado-Torres, L., Nellore, A., Frazee, A. C., Wilks, C., Love, M. I., Langmead, B., Irizarry, R. A., Leek, J. T. & Jaffe, A. E., Jan 1 2017, In : Nucleic Acids Research. 45, 2, p. e9

Research output: Contribution to journalArticle

RNA Sequence Analysis
Genome
Genes
Software
Genotype
20 Citations (Scopus)

QSVA framework for RNA quality correction in differential expression analysis

Jaffe, A. E., Tao, R., Norris, A. L., Kealhofer, M., Nellore, A., Shin, J. H., Kim, D., Jia, Y., Hyde, T. M., Kleinman, J. E., Straub, R. E., Leek, J. T. & Weinberger, D. R., Jul 3 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 27, p. 7130-7135 6 p.

Research output: Contribution to journalArticle

RNA
RNA Sequence Analysis
Social Adjustment
RNA Stability
Brain
13 Citations (Scopus)

Rail-RNA: scalable analysis of RNA-seq splicing and coverage

Nellore, A., Collado-Torres, L., Jaffe, A. E., Alquicira-Hernández, J., Wilks, C., Pritt, J., Morton, J., Leek, J. T. & Langmead, B., Dec 15 2017, In : Bioinformatics (Oxford, England). 33, 24, p. 4033-4040 8 p.

Research output: Contribution to journalArticle

RNA Splicing
RNA Sequence Analysis
RNA
Sequencing
Rails
4 Citations (Scopus)

recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor

Collado-Torres, L., Nellore, A. & Jaffe, A. E., 2017, In : F1000Research. 6, 1558.

Research output: Contribution to journalArticle

Workflow
Genes
RNA
Metadata
Websites
2016
34 Citations (Scopus)

Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive

Nellore, A., Jaffe, A. E., Fortin, J. P., Alquicira-Hernández, J., Collado-Torres, L., Wang, S., Phillips, R. A., Karbhari, N., Hansen, K. D., Langmead, B. & Leek, J. T., Dec 30 2016, In : Genome Biology. 17, 1, 266.

Research output: Contribution to journalArticle

RNA
Molecular Sequence Annotation
gene
Exons
Protein Isoforms
4 Citations (Scopus)

Rail-dbGaP: Analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce

Nellore, A., Wilks, C., Hansen, K. D., Leek, J. T. & Langmead, B., Aug 15 2016, In : Bioinformatics. 32, 16, p. 2551-2553 3 p.

Research output: Contribution to journalArticle

MapReduce
RNA
Rails
Network protocols
Research Personnel
2015
11 Citations (Scopus)

Recovery guarantees for exemplar-based clustering

Nellore, A. & Ward, R., Dec 1 2015, In : Information and Computation. 245, p. 165-180 16 p.

Research output: Contribution to journalArticle

Recovery
Clustering
Ball
Linear programming
Linear Programming Relaxation
2013
148 Citations (Scopus)

Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo

Ramos, A. D., Diaz, A., Nellore, A., Delgado, R. N., Park, K. Y., Gonzales-Roybal, G., Oldham, M. C., Song, J. S. & Lim, D. A., May 2 2013, In : Cell Stem Cell. 12, 5, p. 616-628 13 p.

Research output: Contribution to journalArticle

Long Noncoding RNA
Adult Stem Cells
Neural Stem Cells
Genome
Lateral Ventricles
7 Citations (Scopus)

NSeq: A multithreaded Java application for finding positioned nucleosomes from sequencing data

Nellore, A., Bobkov, K., Howe, E., Pankov, A., Diaz, A. & Song, J. S., 2013, In : Frontiers in Genetics. 3, JAN, Article 320.

Research output: Contribution to journalArticle

Nucleosomes
Software
DNA
380 Citations (Scopus)

Oncogenic BRAF regulates oxidative metabolism via PGC1α and MITF

Haq, R., Shoag, J., Andreu-Perez, P., Yokoyama, S., Edelman, H., Rowe, G. C., Frederick, D. T., Hurley, A. D., Nellore, A., Kung, A. L., Wargo, J. A., Song, J. S., Fisher, D. E., Arany, Z. & Widlund, H. R., Mar 18 2013, In : Cancer Cell. 23, 3, p. 302-315 14 p.

Research output: Contribution to journalArticle

Melanoma
Oxidative Phosphorylation
Melanocytes
Organelle Biogenesis
Cell Cycle Checkpoints
2012
34 Citations (Scopus)

CHANCE: Comprehensive software for quality control andvalidation of ChIP-seq data

Diaz, A., Nellore, A. & Song, J. S., Oct 15 2012, (Accepted/In press) In : Genome Biology.

Research output: Contribution to journalArticle

Protein Interaction Maps
Immunoprecipitation
Quality Control
quality control
Software
2009
36 Citations (Scopus)

Bound on the speed of sound from holography

Cherman, A., Cohen, T. D. & Nellore, A., Sep 3 2009, In : Physical Review D - Particles, Fields, Gravitation and Cosmology. 80, 6, 066003.

Research output: Contribution to journalArticle

holography
acoustics
gravitation
scalars
configurations
129 Citations (Scopus)

Ground states of holographic superconductors

Gubser, S. S. & Nellore, A., Nov 9 2009, In : Physical Review D - Particles, Fields, Gravitation and Cosmology. 80, 10, 105007.

Research output: Contribution to journalArticle

scaling
ground state
scalars
electric charge
broken symmetry
53 Citations (Scopus)

Low-temperature behavior of the abelian higgs model in anti-de switter space

Gubser, S. S. & Nellore, A., 2009, In : Journal of High Energy Physics. 2009, 4, 008.

Research output: Contribution to journalArticle

scalars
domain wall
refraction
broken symmetry
conductivity
17 Citations (Scopus)

Universal relations of transport coefficients from holography

Cherman, A. & Nellore, A., Sep 10 2009, In : Physical Review D - Particles, Fields, Gravitation and Cosmology. 80, 6, 066006.

Research output: Contribution to journalArticle

holography
diffusion coefficient
transport properties
viscosity
conductivity
2008
165 Citations (Scopus)

Mimicking the QCD equation of state with a dual black hole

Gubser, S. S. & Nellore, A., Oct 29 2008, In : Physical Review D - Particles, Fields, Gravitation and Cosmology. 78, 8, 086007.

Research output: Contribution to journalArticle

equations of state
quantum chromodynamics
gravitation
scalars
144 Citations (Scopus)

Thermodynamics and bulk viscosity of approximate black hole duals to finite temperature quantum chromodynamics

Gubser, S. S., Nellore, A., Pufu, S. S. & Rocha, F. D., Sep 23 2008, In : Physical Review Letters. 101, 13, 131601.

Research output: Contribution to journalArticle

quantum chromodynamics
viscosity
thermodynamics
entropy
range (extremes)
2004

Excited baryon decay widths in large [Formula Presented] QCD

Cohen, T. D., Dakin, D. C., Nellore, A. & Lebed, R. F., Jan 1 2004, In : Physical Review D - Particles, Fields, Gravitation and Cosmology. 69, 5, 1 p.

Research output: Contribution to journalArticle

baryons
quantum chromodynamics
decay
quark models
nucleons
46 Citations (Scopus)

Excited baryon decay widths in large Nc QCD

Cohen, T. D., Dakin, D. C., Nellore, A. & Lebed, R. F., 2004, In : Physical Review D. 69, 5, 056001.

Research output: Contribution to journalArticle

baryons
quantum chromodynamics
decay
quark models
nucleons

Pion-nucleon scattering relations at next-to-leading order in [Formula Presented]

Cohen, T. D., Dakin, D. C., Nellore, A. & Lebed, R. F., Jan 1 2004, In : Physical Review D - Particles, Fields, Gravitation and Cosmology. 70, 5, 1 p.

Research output: Contribution to journalArticle

pions
scattering
solitary waves
quantum chromodynamics
expansion
22 Citations (Scopus)

Pion-nucleon scattering relations at next-to-leading order in 1/N c

Cohen, T. D., Dakin, D. C., Nellore, A. & Lebed, R. F., 2004, In : Physical Review D - Particles, Fields, Gravitation and Cosmology. 70, 5, 056004.

Research output: Contribution to journalArticle

pions
Scattering
solitary waves
scattering
Solitons
8 Citations (Scopus)

Quantization of exotic states in SU(3) soliton models: A solvable quantum mechanical analog

Cherman, A., Cohen, T. D. & Nellore, A., Nov 2004, In : Physical Review D - Particles, Fields, Gravitation and Cosmology. 70, 9, 096003.

Research output: Contribution to journalArticle

Solitons
Quantization
rigid rotors
solitary waves
Baryon
2003
259 Citations (Scopus)

The growth kinetics of TiO2 nanoparticles from titanium(IV) alkoxide at high water/titanium ratio

Oskam, G., Nellore, A., Penn, R. L. & Searson, P. C., Feb 27 2003, In : Journal of Physical Chemistry B. 107, 8, p. 1734-1738 5 p.

Research output: Contribution to journalArticle

Growth kinetics
alkoxides
Titanium
Nanoparticles
titanium