Toward better benchmarking: challenge-based methods assessment in cancer genomics

Paul C. Boutros, Adam Margolin, Joshua M. Stuart, Andrea Califano, Gustavo Stolovitzky

Research output: Contribution to journalArticle

26 Citations (Scopus)

Abstract

Rapid technological development has created an urgent need for improved evaluation of algorithms for the analysis of cancer genomics data. We outline how challenge-based assessment may help fill this gap by leveraging crowd-sourcing to distribute effort and reduce bias.

Original languageEnglish (US)
Pages (from-to)462
Number of pages1
JournalGenome Biology
Volume15
Issue number9
DOIs
StatePublished - 2014
Externally publishedYes

Fingerprint

Crowdsourcing
Benchmarking
benchmarking
technological development
assessment method
Genomics
cancer
genomics
neoplasms
Neoplasms
methodology
evaluation
need
analysis

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Genetics
  • Cell Biology

Cite this

Toward better benchmarking : challenge-based methods assessment in cancer genomics. / Boutros, Paul C.; Margolin, Adam; Stuart, Joshua M.; Califano, Andrea; Stolovitzky, Gustavo.

In: Genome Biology, Vol. 15, No. 9, 2014, p. 462.

Research output: Contribution to journalArticle

Boutros, Paul C. ; Margolin, Adam ; Stuart, Joshua M. ; Califano, Andrea ; Stolovitzky, Gustavo. / Toward better benchmarking : challenge-based methods assessment in cancer genomics. In: Genome Biology. 2014 ; Vol. 15, No. 9. pp. 462.
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