TOPSAN: A dynamic web database for structural genomics

Kyle Ellrott, Christian M. Zmasek, Dana Weekes, S. Sri Krishna, Constantina Bakolitsa, Adam Godzik, John Wooley

Research output: Contribution to journalArticle

16 Citations (Scopus)

Abstract

The Open Protein Structure Annotation Network (TOPSAN) is a web-based collaboration platform for exploring and annotating structures determined by structural genomics efforts. Characterization of those structures presents a challenge since the majority of the proteins themselves have not yet been characterized. Responding to this challenge, the TOPSAN platform facilitates collaborative annotation and investigation via a user-friendly webbased interface pre-populated with automatically generated information. Semantic web technologies expand and enrich TOPSAN's content through links to larger sets of related databases, and thus, enable data integration from disparate sources and data mining via conventional query languages. TOPSAN can be found at http://www.topsan.org.

Original languageEnglish (US)
JournalNucleic Acids Research
Volume39
Issue numberSUPPL. 1
DOIs
StatePublished - Jan 2011
Externally publishedYes

Fingerprint

Molecular Sequence Annotation
Genomics
Databases
Data Mining
Semantics
Language
Technology
Proteins

ASJC Scopus subject areas

  • Genetics

Cite this

Ellrott, K., Zmasek, C. M., Weekes, D., Krishna, S. S., Bakolitsa, C., Godzik, A., & Wooley, J. (2011). TOPSAN: A dynamic web database for structural genomics. Nucleic Acids Research, 39(SUPPL. 1). https://doi.org/10.1093/nar/gkq902

TOPSAN : A dynamic web database for structural genomics. / Ellrott, Kyle; Zmasek, Christian M.; Weekes, Dana; Krishna, S. Sri; Bakolitsa, Constantina; Godzik, Adam; Wooley, John.

In: Nucleic Acids Research, Vol. 39, No. SUPPL. 1, 01.2011.

Research output: Contribution to journalArticle

Ellrott, K, Zmasek, CM, Weekes, D, Krishna, SS, Bakolitsa, C, Godzik, A & Wooley, J 2011, 'TOPSAN: A dynamic web database for structural genomics', Nucleic Acids Research, vol. 39, no. SUPPL. 1. https://doi.org/10.1093/nar/gkq902
Ellrott K, Zmasek CM, Weekes D, Krishna SS, Bakolitsa C, Godzik A et al. TOPSAN: A dynamic web database for structural genomics. Nucleic Acids Research. 2011 Jan;39(SUPPL. 1). https://doi.org/10.1093/nar/gkq902
Ellrott, Kyle ; Zmasek, Christian M. ; Weekes, Dana ; Krishna, S. Sri ; Bakolitsa, Constantina ; Godzik, Adam ; Wooley, John. / TOPSAN : A dynamic web database for structural genomics. In: Nucleic Acids Research. 2011 ; Vol. 39, No. SUPPL. 1.
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