TY - JOUR
T1 - The Galaxy platform for accessible, reproducible and collaborative biomedical analyses
T2 - 2018 update
AU - Afgan, Enis
AU - Baker, Dannon
AU - Batut, Bérénice
AU - Van Den Beek, Marius
AU - Bouvier, Dave
AU - Ech, Martin
AU - Chilton, John
AU - Clements, Dave
AU - Coraor, Nate
AU - Grüning, Björn A.
AU - Guerler, Aysam
AU - Hillman-Jackson, Jennifer
AU - Hiltemann, Saskia
AU - Jalili, Vahid
AU - Rasche, Helena
AU - Soranzo, Nicola
AU - Goecks, Jeremy
AU - Taylor, James
AU - Nekrutenko, Anton
AU - Blankenberg, Daniel
N1 - Funding Information:
National Human Genome Research Institute, National Institutes of Health [HG006620, HG005133, HG004909 and HG005542]; NSF [DBI 0543285, 0850103 and 1661497]; Huck Institutes for the Life Sciences at Penn State; and, in part, under a grant with the Pennsylvania Department of Health using Tobacco Settlement Funds, the Department specifically disclaims responsibility for any analyses, interpretations or conclusions. Funding for open access charge: Cleveland Clinic. Conflict of interest statement. None declared.
PY - 2018/7/2
Y1 - 2018/7/2
N2 - Galaxy (homepage: https://galaxyproject.org, main public server: https://usegalaxy.org) is a web-based scientific analysis platform used by tens of thousands of scientists across the world to analyze large biomedical datasets such as those found in genomics, proteomics, metabolomics and imaging. Started in 2005, Galaxy continues to focus on three key challenges of data-driven biomedical science: making analyses accessible to all researchers, ensuring analyses are completely reproducible, and making it simple to communicate analyses so that they can be reused and extended. During the last two years, the Galaxy team and the open-source community around Galaxy have made substantial improvements to Galaxy's core framework, user interface, tools, and training materials. Framework and user interface improvements now enable Galaxy to be used for analyzing tens of thousands of datasets, and >5500 tools are now available from the Galaxy ToolShed. The Galaxy community has led an effort to create numerous high-quality tutorials focused on common types of genomic analyses. The Galaxy developer and user communities continue to grow and be integral to Galaxy's development. The number of Galaxy public servers, developers contributing to the Galaxy framework and its tools, and users of the main Galaxy server have all increased substantially.
AB - Galaxy (homepage: https://galaxyproject.org, main public server: https://usegalaxy.org) is a web-based scientific analysis platform used by tens of thousands of scientists across the world to analyze large biomedical datasets such as those found in genomics, proteomics, metabolomics and imaging. Started in 2005, Galaxy continues to focus on three key challenges of data-driven biomedical science: making analyses accessible to all researchers, ensuring analyses are completely reproducible, and making it simple to communicate analyses so that they can be reused and extended. During the last two years, the Galaxy team and the open-source community around Galaxy have made substantial improvements to Galaxy's core framework, user interface, tools, and training materials. Framework and user interface improvements now enable Galaxy to be used for analyzing tens of thousands of datasets, and >5500 tools are now available from the Galaxy ToolShed. The Galaxy community has led an effort to create numerous high-quality tutorials focused on common types of genomic analyses. The Galaxy developer and user communities continue to grow and be integral to Galaxy's development. The number of Galaxy public servers, developers contributing to the Galaxy framework and its tools, and users of the main Galaxy server have all increased substantially.
UR - http://www.scopus.com/inward/record.url?scp=85049781001&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85049781001&partnerID=8YFLogxK
U2 - 10.1093/nar/gky379
DO - 10.1093/nar/gky379
M3 - Article
C2 - 29790989
AN - SCOPUS:85049781001
VL - 46
SP - W537-W544
JO - Nucleic Acids Research
JF - Nucleic Acids Research
SN - 0305-1048
IS - W1
ER -