TandTRAQ: An open-source tool for integrated protein identification and quantitation

Ted Laderas, Cory Bystrom, Debra Mcmillen, Guang Fan, Shannon Mcweeney

Research output: Contribution to journalArticle

9 Scopus citations

Abstract

Summary: Integrating qualitative protein identification with quantitative protein analysis is non-trivial, given incompatibility in output formats. We present TandTRAQ, a standalone utility that integrates results from i-Tracker, an open-source iTRAQ quantitation program with the search results from X!Tandem, an open-source proteome search engine. The utility runs from the command-line and can be easily integrated into a pipeline for automation.

Original languageEnglish (US)
Pages (from-to)3394-3396
Number of pages3
JournalBioinformatics
Volume23
Issue number24
DOIs
StatePublished - Dec 1 2007

ASJC Scopus subject areas

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

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