Rare double sex and mab-3-related transcription factor 1 regulatory variants in severe spermatogenic failure

A. C. Lima, F. Carvalho, J. Gonçalves, S. Fernandes, P. I. Marques, M. Sousa, A. Barros, S. Seixas, A. Amorim, Don Conrad, A. M. Lopes

Research output: Contribution to journalArticle

4 Citations (Scopus)

Abstract

The double sex and mab-3-related transcription factor 1 (DMRT1) gene has long been linked to sex-determining pathways across vertebrates and is known to play an essential role in gonadal development and maintenance of spermatogenesis in mice. In humans, the genomic region harboring the DMRT gene cluster has been implicated in disorders of sex development and recently DMRT1 deletions were shown to be associated with non-obstructive azoospermia (NOA). In this work, we have employed different methods to screen a cohort of Portuguese NOA patients for DMRT1 exonic insertions and deletions [by multiplex ligation probe assay (MLPA); n = 68] and point mutations (by Sanger sequencing; n = 155). We have found three novel patient-specific non-coding variants in heterozygosity that were absent from 357 geographically matched controls. One of these is a complex variant with a putative regulatory role (c.-223_-219CGAAA>T), located in the promoter region within a conserved sequence involved in Dmrt1 repression. Moreover, while DMRT1 domains are highly conserved across vertebrates and show reduced levels of diversity in human populations, two rare synonymous substitutions (rs376518776 and rs34946058) and two rare non-coding variants that potentially affect DMRT1 expression and splicing (rs144122237 and rs200423545) were overrepresented in patients when compared with 376 Portuguese controls (301 fertile and 75 normozoospermic). Overall our previous and present results suggest a role of changes in DMRT1 dosage in NOA potentially also through a process of gene misregulation, even though DMRT1 deleterious variants seem to be rare.

Original languageEnglish (US)
Pages (from-to)825-833
Number of pages9
JournalAndrology
Volume3
Issue number5
DOIs
StatePublished - Sep 1 2015
Externally publishedYes

Fingerprint

Transcription Factor 3
Azoospermia
Vertebrates
Disorders of Sex Development
Conserved Sequence
Spermatogenesis
Multigene Family
Point Mutation
Genetic Promoter Regions
Genes
Ligation
Maintenance

Keywords

  • Alternative splicing
  • Cis-regulatory variants
  • Double sex and mab-3-related transcription factor 1
  • Double sex and mab-3-related transcription factor 1 promoter
  • Non-obstructive azoospermia

ASJC Scopus subject areas

  • Endocrinology, Diabetes and Metabolism
  • Reproductive Medicine
  • Endocrinology
  • Urology

Cite this

Lima, A. C., Carvalho, F., Gonçalves, J., Fernandes, S., Marques, P. I., Sousa, M., ... Lopes, A. M. (2015). Rare double sex and mab-3-related transcription factor 1 regulatory variants in severe spermatogenic failure. Andrology, 3(5), 825-833. https://doi.org/10.1111/andr.12063

Rare double sex and mab-3-related transcription factor 1 regulatory variants in severe spermatogenic failure. / Lima, A. C.; Carvalho, F.; Gonçalves, J.; Fernandes, S.; Marques, P. I.; Sousa, M.; Barros, A.; Seixas, S.; Amorim, A.; Conrad, Don; Lopes, A. M.

In: Andrology, Vol. 3, No. 5, 01.09.2015, p. 825-833.

Research output: Contribution to journalArticle

Lima, AC, Carvalho, F, Gonçalves, J, Fernandes, S, Marques, PI, Sousa, M, Barros, A, Seixas, S, Amorim, A, Conrad, D & Lopes, AM 2015, 'Rare double sex and mab-3-related transcription factor 1 regulatory variants in severe spermatogenic failure', Andrology, vol. 3, no. 5, pp. 825-833. https://doi.org/10.1111/andr.12063
Lima AC, Carvalho F, Gonçalves J, Fernandes S, Marques PI, Sousa M et al. Rare double sex and mab-3-related transcription factor 1 regulatory variants in severe spermatogenic failure. Andrology. 2015 Sep 1;3(5):825-833. https://doi.org/10.1111/andr.12063
Lima, A. C. ; Carvalho, F. ; Gonçalves, J. ; Fernandes, S. ; Marques, P. I. ; Sousa, M. ; Barros, A. ; Seixas, S. ; Amorim, A. ; Conrad, Don ; Lopes, A. M. / Rare double sex and mab-3-related transcription factor 1 regulatory variants in severe spermatogenic failure. In: Andrology. 2015 ; Vol. 3, No. 5. pp. 825-833.
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abstract = "The double sex and mab-3-related transcription factor 1 (DMRT1) gene has long been linked to sex-determining pathways across vertebrates and is known to play an essential role in gonadal development and maintenance of spermatogenesis in mice. In humans, the genomic region harboring the DMRT gene cluster has been implicated in disorders of sex development and recently DMRT1 deletions were shown to be associated with non-obstructive azoospermia (NOA). In this work, we have employed different methods to screen a cohort of Portuguese NOA patients for DMRT1 exonic insertions and deletions [by multiplex ligation probe assay (MLPA); n = 68] and point mutations (by Sanger sequencing; n = 155). We have found three novel patient-specific non-coding variants in heterozygosity that were absent from 357 geographically matched controls. One of these is a complex variant with a putative regulatory role (c.-223_-219CGAAA>T), located in the promoter region within a conserved sequence involved in Dmrt1 repression. Moreover, while DMRT1 domains are highly conserved across vertebrates and show reduced levels of diversity in human populations, two rare synonymous substitutions (rs376518776 and rs34946058) and two rare non-coding variants that potentially affect DMRT1 expression and splicing (rs144122237 and rs200423545) were overrepresented in patients when compared with 376 Portuguese controls (301 fertile and 75 normozoospermic). Overall our previous and present results suggest a role of changes in DMRT1 dosage in NOA potentially also through a process of gene misregulation, even though DMRT1 deleterious variants seem to be rare.",
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AU - Sousa, M.

AU - Barros, A.

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AU - Conrad, Don

AU - Lopes, A. M.

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