PaxtoolsR: Pathway analysis in R using Pathway Commons

Augustin Luna, Özgün Babur, Bülent Arman Aksoy, Emek Demir, Chris Sander

Research output: Contribution to journalArticle

11 Scopus citations

Abstract

Purpose: PaxtoolsR package enables access to pathway data represented in the BioPAX format and made available through the Pathway Commons webservice for users of the R language to aid in advanced pathway analyses. Features include the extraction, merging and validation of pathway data represented in the BioPAX format. This package also provides novel pathway datasets and advanced querying features for R users through the Pathway Commons webservice allowing users to query, extract and retrieve data and integrate these data with local BioPAX datasets.

Original languageEnglish (US)
Pages (from-to)1262-1264
Number of pages3
JournalBioinformatics
Volume32
Issue number8
DOIs
StatePublished - Apr 15 2016

ASJC Scopus subject areas

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

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