PATIKAweb

A Web interface for analyzing biological pathways through advanced querying and visualization

U. Dogrusoz, E. Z. Erson, E. Giral, Emek Demir, Ozgun Babur, A. Cetintas, R. Colak

Research output: Contribution to journalArticle

43 Citations (Scopus)

Abstract

Summary: PATIKAweb provides a Web interface for retrieving and analyzing biological pathways in the PATIKA database, which contains data integrated from various prominent public pathway databases. It features a user-friendly interface, dynamic visualization and automated layout, advanced graph-theoretic queries for extracting biologically important phenomena, local persistence capability and exporting facilities to various pathway exchange formats.

Original languageEnglish (US)
Pages (from-to)374-375
Number of pages2
JournalBioinformatics
Volume22
Issue number3
DOIs
StatePublished - Feb 1 2006
Externally publishedYes

Fingerprint

Pathway
Visualization
Databases
Interface Dynamics
User interfaces
Persistence
User Interface
Layout
Query
Graph in graph theory

ASJC Scopus subject areas

  • Clinical Biochemistry
  • Computer Science Applications
  • Computational Theory and Mathematics

Cite this

PATIKAweb : A Web interface for analyzing biological pathways through advanced querying and visualization. / Dogrusoz, U.; Erson, E. Z.; Giral, E.; Demir, Emek; Babur, Ozgun; Cetintas, A.; Colak, R.

In: Bioinformatics, Vol. 22, No. 3, 01.02.2006, p. 374-375.

Research output: Contribution to journalArticle

Dogrusoz, U. ; Erson, E. Z. ; Giral, E. ; Demir, Emek ; Babur, Ozgun ; Cetintas, A. ; Colak, R. / PATIKAweb : A Web interface for analyzing biological pathways through advanced querying and visualization. In: Bioinformatics. 2006 ; Vol. 22, No. 3. pp. 374-375.
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