PATIKAweb: A Web interface for analyzing biological pathways through advanced querying and visualization

U. Dogrusoz; E. Z. Erson; E. Giral; E. Demir; O. Babur; A. Cetintas; R. Colak

doi:10.1093/bioinformatics/bti776

PATIKAweb: A Web interface for analyzing biological pathways through advanced querying and visualization

U. Dogrusoz, E. Z. Erson, E. Giral, E. Demir, O. Babur, A. Cetintas, R. Colak

Research output: Contribution to journal › Article › peer-review

47 Scopus citations

Abstract

Summary: PATIKAweb provides a Web interface for retrieving and analyzing biological pathways in the PATIKA database, which contains data integrated from various prominent public pathway databases. It features a user-friendly interface, dynamic visualization and automated layout, advanced graph-theoretic queries for extracting biologically important phenomena, local persistence capability and exporting facilities to various pathway exchange formats.

Original language	English (US)
Pages (from-to)	374-375
Number of pages	2
Journal	Bioinformatics
Volume	22
Issue number	3
DOIs	https://doi.org/10.1093/bioinformatics/bti776
State	Published - Feb 1 2006
Externally published	Yes

ASJC Scopus subject areas

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

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10.1093/bioinformatics/bti776

Cite this

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title = "PATIKAweb: A Web interface for analyzing biological pathways through advanced querying and visualization",

abstract = "Summary: PATIKAweb provides a Web interface for retrieving and analyzing biological pathways in the PATIKA database, which contains data integrated from various prominent public pathway databases. It features a user-friendly interface, dynamic visualization and automated layout, advanced graph-theoretic queries for extracting biologically important phenomena, local persistence capability and exporting facilities to various pathway exchange formats.",

author = "U. Dogrusoz and Erson, {E. Z.} and E. Giral and E. Demir and O. Babur and A. Cetintas and R. Colak",

note = "Funding Information: The authors wish to thank the rest of the Patikans for their contributions and the anonymous referees for their helpful suggestions. This work was supported in part by TUBITAK (The Scientific and Technological Research Council of Turkey), grant number 104E049.",

year = "2006",

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doi = "10.1093/bioinformatics/bti776",

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T2 - A Web interface for analyzing biological pathways through advanced querying and visualization

AU - Dogrusoz, U.

AU - Erson, E. Z.

AU - Giral, E.

AU - Demir, E.

AU - Babur, O.

AU - Cetintas, A.

AU - Colak, R.

N1 - Funding Information: The authors wish to thank the rest of the Patikans for their contributions and the anonymous referees for their helpful suggestions. This work was supported in part by TUBITAK (The Scientific and Technological Research Council of Turkey), grant number 104E049.

PY - 2006/2/1

Y1 - 2006/2/1

N2 - Summary: PATIKAweb provides a Web interface for retrieving and analyzing biological pathways in the PATIKA database, which contains data integrated from various prominent public pathway databases. It features a user-friendly interface, dynamic visualization and automated layout, advanced graph-theoretic queries for extracting biologically important phenomena, local persistence capability and exporting facilities to various pathway exchange formats.

AB - Summary: PATIKAweb provides a Web interface for retrieving and analyzing biological pathways in the PATIKA database, which contains data integrated from various prominent public pathway databases. It features a user-friendly interface, dynamic visualization and automated layout, advanced graph-theoretic queries for extracting biologically important phenomena, local persistence capability and exporting facilities to various pathway exchange formats.

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ER -

PATIKAweb: A Web interface for analyzing biological pathways through advanced querying and visualization

Abstract

ASJC Scopus subject areas

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