PATIKAweb: A Web interface for analyzing biological pathways through advanced querying and visualization

U. Dogrusoz, E. Z. Erson, E. Giral, E. Demir, O. Babur, A. Cetintas, R. Colak

Research output: Contribution to journalArticle

43 Scopus citations

Abstract

Summary: PATIKAweb provides a Web interface for retrieving and analyzing biological pathways in the PATIKA database, which contains data integrated from various prominent public pathway databases. It features a user-friendly interface, dynamic visualization and automated layout, advanced graph-theoretic queries for extracting biologically important phenomena, local persistence capability and exporting facilities to various pathway exchange formats.

Original languageEnglish (US)
Pages (from-to)374-375
Number of pages2
JournalBioinformatics
Volume22
Issue number3
DOIs
StatePublished - Feb 1 2006

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ASJC Scopus subject areas

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

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