Functional gene group summarization by clustering MEDLINE abstract sentences.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

Tools to automatically summarize functional gene group information from the biomedical literature will help genomics researchers both better interpret gene expression data and understand biological pathways. In this study, we built a system that takes in a set of genes and MEDLINE records and outputs clusters of genes along with summaries of each cluster by sentence extraction from MEDLINE abstracts. Our preliminary use-case evaluation shows that this approach can identify gene clusters similar to manually generated groupings.

Original languageEnglish (US)
Pages (from-to)1151
Number of pages1
JournalAMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium
StatePublished - 2006

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Multigene Family
MEDLINE
Cluster Analysis
Genomics
Genes
Research Personnel
Gene Expression

ASJC Scopus subject areas

  • Medicine(all)

Cite this

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title = "Functional gene group summarization by clustering MEDLINE abstract sentences.",
abstract = "Tools to automatically summarize functional gene group information from the biomedical literature will help genomics researchers both better interpret gene expression data and understand biological pathways. In this study, we built a system that takes in a set of genes and MEDLINE records and outputs clusters of genes along with summaries of each cluster by sentence extraction from MEDLINE abstracts. Our preliminary use-case evaluation shows that this approach can identify gene clusters similar to manually generated groupings.",
author = "Jianji Yang and Aaron Cohen and Hersh, {William (Bill)}",
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language = "English (US)",
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journal = "AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium",
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