Electron microscopy analysis of a disaccharide analog complex reveals receptor interactions of adeno-associated virus

Qing Xie, Michael Spilman, Nancy L. Meyer, Thomas F. Lerch, Scott M. Stagg, Michael Chapman

Research output: Contribution to journalArticle

7 Citations (Scopus)

Abstract

Mechanistic studies of macromolecular complexes often feature X-ray structures of complexes with bound ligands. The attachment of adeno-associated virus (AAV) to cell surface glycosaminoglycans (GAGs) is an example that has not proven amenable to crystallography, because the binding of GAG analogs disrupts lattice contacts. The interactions of AAV with GAGs are of interest in mediating the cell specificity of AAV-based gene therapy vectors. Previous electron microscopy led to differing conclusions on the exact binding site and the existence of large ligand-induced conformational changes in the virus. Conformational changes are expected during cell entry, but it has remained unclear whether the electron microscopy provided evidence of their induction by GAG-binding. Taking advantage of automated data collection, careful processing and new methods of structure refinement, the structure of AAV-DJ complexed with sucrose octasulfate is determined by electron microscopy difference map analysis to 4.8. Å resolution. At this higher resolution, individual sulfate groups are discernible, providing a stereochemical validation of map interpretation, and highlighting interactions with two surface arginines that have been implicated in genetic studies. Conformational changes induced by the SOS are modest and limited to the loop most directly interacting with the ligand. While the resolution attainable will depend on sample order and other factors, there are an increasing number of macromolecular complexes that can be studied by cryo-electron microscopy at resolutions beyond 5. Å, for which the approaches used here could be used to characterize the binding of inhibitors and other small molecule effectors when crystallography is not tractable.

Original languageEnglish (US)
Pages (from-to)129-135
Number of pages7
JournalJournal of Structural Biology
Volume184
Issue number2
DOIs
StatePublished - Nov 2013

Fingerprint

Dependovirus
Disaccharides
Glycosaminoglycans
Electron Microscopy
Macromolecular Substances
Crystallography
Ligands
Cryoelectron Microscopy
Genetic Therapy
Sulfates
Arginine
Binding Sites
X-Rays
Viruses

Keywords

  • Attachment
  • Difference map
  • Heparin
  • Parvovirus
  • Receptor
  • Refinement

ASJC Scopus subject areas

  • Structural Biology

Cite this

Electron microscopy analysis of a disaccharide analog complex reveals receptor interactions of adeno-associated virus. / Xie, Qing; Spilman, Michael; Meyer, Nancy L.; Lerch, Thomas F.; Stagg, Scott M.; Chapman, Michael.

In: Journal of Structural Biology, Vol. 184, No. 2, 11.2013, p. 129-135.

Research output: Contribution to journalArticle

Xie, Qing ; Spilman, Michael ; Meyer, Nancy L. ; Lerch, Thomas F. ; Stagg, Scott M. ; Chapman, Michael. / Electron microscopy analysis of a disaccharide analog complex reveals receptor interactions of adeno-associated virus. In: Journal of Structural Biology. 2013 ; Vol. 184, No. 2. pp. 129-135.
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