Developing an application ontology for biomedical resource annotation and retrieval: Challenges and lessons learned

Carlo Torniai; Matthew Brush; Nicole Vasilevsky; Erik Segerdell; Melanie Wilson; Tenille Johnson; Karen Corday; Christopher Shaffer; Melissa Haendel

Developing an application ontology for biomedical resource annotation and retrieval: Challenges and lessons learned

Carlo Torniai, Matthew Brush, Nicole Vasilevsky, Erik Segerdell, Melanie Wilson, Tenille Johnson, Karen Corday, Christopher Shaffer, Melissa Haendel

Research output: Contribution to journal › Conference article › peer-review

8 Scopus citations

Abstract

The eagle-i project has been developing a semantic search portal for biomedical research resources. A unique feature of eagle-i is that the data collection and search tools are completely driven by ontologies. This has been a source of challenges and opportunities regarding use of biomedical ontologies in real-world applications. In this paper, we address our approach and lessons learned for balancing practical project requirements for design and implementation of an ontology driven application, with a desire to conform to best practices for biomedical ontology development.

Original language	English (US)
Pages (from-to)	101-108
Number of pages	8
Journal	CEUR Workshop Proceedings
Volume	833
State	Published - 2011
Event	2nd International Conference on Biomedical Ontology, ICBO 2011 - Buffalo, NY, United States Duration: Jul 26 2011 → Jul 30 2011

Keywords

Application ontology
Biomedical ontologies
Eagle-i
Ontology reuse
Resource

ASJC Scopus subject areas

General Computer Science

Cite this

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title = "Developing an application ontology for biomedical resource annotation and retrieval: Challenges and lessons learned",

abstract = "The eagle-i project has been developing a semantic search portal for biomedical research resources. A unique feature of eagle-i is that the data collection and search tools are completely driven by ontologies. This has been a source of challenges and opportunities regarding use of biomedical ontologies in real-world applications. In this paper, we address our approach and lessons learned for balancing practical project requirements for design and implementation of an ontology driven application, with a desire to conform to best practices for biomedical ontology development.",

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journal = "CEUR Workshop Proceedings",

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T1 - Developing an application ontology for biomedical resource annotation and retrieval

T2 - 2nd International Conference on Biomedical Ontology, ICBO 2011

AU - Torniai, Carlo

AU - Brush, Matthew

AU - Vasilevsky, Nicole

AU - Segerdell, Erik

AU - Wilson, Melanie

AU - Johnson, Tenille

AU - Corday, Karen

AU - Shaffer, Christopher

AU - Haendel, Melissa

PY - 2011

Y1 - 2011

N2 - The eagle-i project has been developing a semantic search portal for biomedical research resources. A unique feature of eagle-i is that the data collection and search tools are completely driven by ontologies. This has been a source of challenges and opportunities regarding use of biomedical ontologies in real-world applications. In this paper, we address our approach and lessons learned for balancing practical project requirements for design and implementation of an ontology driven application, with a desire to conform to best practices for biomedical ontology development.

AB - The eagle-i project has been developing a semantic search portal for biomedical research resources. A unique feature of eagle-i is that the data collection and search tools are completely driven by ontologies. This has been a source of challenges and opportunities regarding use of biomedical ontologies in real-world applications. In this paper, we address our approach and lessons learned for balancing practical project requirements for design and implementation of an ontology driven application, with a desire to conform to best practices for biomedical ontology development.

KW - Application ontology

KW - Biomedical ontologies

KW - Eagle-i

KW - Ontology reuse

KW - Resource

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M3 - Conference article

AN - SCOPUS:84891923912

SN - 1613-0073

VL - 833

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EP - 108

JO - CEUR Workshop Proceedings

JF - CEUR Workshop Proceedings

Y2 - 26 July 2011 through 30 July 2011

ER -

Developing an application ontology for biomedical resource annotation and retrieval: Challenges and lessons learned

Abstract

Keywords

ASJC Scopus subject areas

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