Cancer-associated mutations in DICER1 RNase IIIa and IIIb domains exert similar effects on miRNA biogenesis

Jeffrey Vedanayagam, Walid K. Chatila, Bülent Arman Aksoy, Sonali Majumdar, Anders Jacobsen Skanderup, Emek Demir, Nikolaus Schultz, Chris Sander, Eric C. Lai

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

Somatic mutations in the RNase IIIb domain of DICER1 arise in cancer and disrupt the cleavage of 5' pre-miRNA arms. Here, we characterize an unstudied, recurrent, mutation (S1344L) in the DICER1 RNase IIIa domain in tumors from The Cancer Genome Atlas (TCGA) project and MSK-IMPACT profiling. RNase IIIa/b hotspots are absent from most cancers, but are notably enriched in uterine cancers. Systematic analysis of TCGA small RNA datasets show that DICER1 RNase IIIa-S1344L tumors deplete 5p-miRNAs, analogous to RNase IIIb hotspot samples. Structural and evolutionary coupling analyses reveal constrained proximity of RNase IIIa-S1344 to the RNase IIIb catalytic site, rationalizing why mutation of this site phenocopies known hotspot alterations. Finally, examination of DICER1 hotspot endometrial tumors reveals derepression of specific miRNA target signatures. In summary, comprehensive analyses of DICER1 somatic mutations and small RNA data reveal a mechanistic aspect of pre-miRNA processing that manifests in specific cancer settings.

Original languageEnglish (US)
Article number3682
JournalNature communications
Volume10
Issue number1
DOIs
StatePublished - Dec 1 2019

Fingerprint

biological evolution
Ribonucleases
mutations
MicroRNAs
cancer
Mutation
Neoplasms
tumors
genome
Tumors
Atlases
Genes
RNA
Genome
preprocessing
Uterine Neoplasms
proximity
cleavage
examination
signatures

ASJC Scopus subject areas

  • Chemistry(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Physics and Astronomy(all)

Cite this

Vedanayagam, J., Chatila, W. K., Aksoy, B. A., Majumdar, S., Skanderup, A. J., Demir, E., ... Lai, E. C. (2019). Cancer-associated mutations in DICER1 RNase IIIa and IIIb domains exert similar effects on miRNA biogenesis. Nature communications, 10(1), [3682]. https://doi.org/10.1038/s41467-019-11610-1

Cancer-associated mutations in DICER1 RNase IIIa and IIIb domains exert similar effects on miRNA biogenesis. / Vedanayagam, Jeffrey; Chatila, Walid K.; Aksoy, Bülent Arman; Majumdar, Sonali; Skanderup, Anders Jacobsen; Demir, Emek; Schultz, Nikolaus; Sander, Chris; Lai, Eric C.

In: Nature communications, Vol. 10, No. 1, 3682, 01.12.2019.

Research output: Contribution to journalArticle

Vedanayagam, J, Chatila, WK, Aksoy, BA, Majumdar, S, Skanderup, AJ, Demir, E, Schultz, N, Sander, C & Lai, EC 2019, 'Cancer-associated mutations in DICER1 RNase IIIa and IIIb domains exert similar effects on miRNA biogenesis', Nature communications, vol. 10, no. 1, 3682. https://doi.org/10.1038/s41467-019-11610-1
Vedanayagam, Jeffrey ; Chatila, Walid K. ; Aksoy, Bülent Arman ; Majumdar, Sonali ; Skanderup, Anders Jacobsen ; Demir, Emek ; Schultz, Nikolaus ; Sander, Chris ; Lai, Eric C. / Cancer-associated mutations in DICER1 RNase IIIa and IIIb domains exert similar effects on miRNA biogenesis. In: Nature communications. 2019 ; Vol. 10, No. 1.
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