TY - JOUR
T1 - Aligning the human phenotype and mammalian phenotype ontology using dead simple ontology design patterns
AU - Vasilevsky, Nicole
AU - Balhoff, James P.
AU - Mungall, Christopher J.
AU - Osumi-Sutherland, David
AU - Kohler, Sebastian
AU - Bello, Susan
AU - Smith, Cynthia
AU - Robinson, Peter
AU - Haendel, Melissa
N1 - Funding Information:
Monarch is supported generously by a NIH Office of the Director Grant #5R24OD011883, as well as by NIH-UDP: HHSN268201300036C, HHSN268201400093P, NCI/Leidos #15X143. Table Editor nadDO SDP tool developmentisuspportedybINHrGant #1U01 HG009453-01.
Funding Information:
Monarch is supported generously by a NIH Office of the Director Grant #5R24OD011883, as well as by NIH-UDP: HHSN268201300036C, HHSN268201400093P, NCI/Leidos #15X143. Table Editor and DOSDP tool development is supported by NIH Grant #1U01 HG009453-01.
PY - 2017
Y1 - 2017
N2 - The Human Phenotype Ontology (HP) and Mammalian Phenotype (MP) Ontology represent information about abnormal phenotypes encountered in human diseases and mammalian organisms, respectively. It is a goal to co-develop these ontologies and align the terminology and logical axioms to increase interoperability of the two ontologies. Towards this end, we have worked to develop consistent design patterns for commonly used types of classes, such as morphological phenotypes or abnormal anatomical structures. We are currently implementing ‘dead simple ontology design patterns’ (DOSDP), which are design patterns that can be specified in a YAML text file and can be used to generate new terms, documentation, retrofit old terms, and allows for reuse of patterns. This paper describes the development and implementation of the DOSDP in the HP and MP.
AB - The Human Phenotype Ontology (HP) and Mammalian Phenotype (MP) Ontology represent information about abnormal phenotypes encountered in human diseases and mammalian organisms, respectively. It is a goal to co-develop these ontologies and align the terminology and logical axioms to increase interoperability of the two ontologies. Towards this end, we have worked to develop consistent design patterns for commonly used types of classes, such as morphological phenotypes or abnormal anatomical structures. We are currently implementing ‘dead simple ontology design patterns’ (DOSDP), which are design patterns that can be specified in a YAML text file and can be used to generate new terms, documentation, retrofit old terms, and allows for reuse of patterns. This paper describes the development and implementation of the DOSDP in the HP and MP.
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M3 - Conference article
AN - SCOPUS:85050455823
SN - 1613-0073
VL - 2137
JO - CEUR Workshop Proceedings
JF - CEUR Workshop Proceedings
T2 - 8th International Conference on Biomedical Ontology, ICBO 2017
Y2 - 13 September 2017 through 15 September 2017
ER -