Adjacent Cell Marker Lateral Spillover Compensation and Reinforcement for Multiplexed Images

Yunhao Bai, Bokai Zhu, Xavier Rovira-Clave, Han Chen, Maxim Markovic, Chi Ngai Chan, Tung Hung Su, David R. McIlwain, Jacob D. Estes, Leeat Keren, Garry P. Nolan, Sizun Jiang

Research output: Contribution to journalArticlepeer-review

2 Scopus citations

Abstract

Multiplex imaging technologies are now routinely capable of measuring more than 40 antibody-labeled parameters in single cells. However, lateral spillage of signals in densely packed tissues presents an obstacle to the assignment of high-dimensional spatial features to individual cells for accurate cell-type annotation. We devised a method to correct for lateral spillage of cell surface markers between adjacent cells termed REinforcement Dynamic Spillover EliminAtion (REDSEA). The use of REDSEA decreased contaminating signals from neighboring cells. It improved the recovery of marker signals across both isotopic (i.e., Multiplexed Ion Beam Imaging) and immunofluorescent (i.e., Cyclic Immunofluorescence) multiplexed images resulting in a marked improvement in cell-type classification.

Original languageEnglish (US)
Article number652631
JournalFrontiers in immunology
Volume12
DOIs
StatePublished - Jul 5 2021
Externally publishedYes

Keywords

  • cell annotation
  • image correction
  • multiplexed tissue imaging
  • signal spillover
  • single-cell biology
  • spatial proteomics

ASJC Scopus subject areas

  • Immunology and Allergy
  • Immunology

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