Find Publications


An alpha-synuclein MRM assay with diagnostic potential for Parkinson's disease and monitoring disease progression

Yang, L., Stewart, T., Shi, M., Pottiez, G., Dator, R., Wu, R., Aro, P., Schuster, R. J., Ginghina, C., Pan, C., Gao, Y., Qian, W., Zabetian, C. P., Hu, S. C., Quinn, J. F. & Zhang, J. Jul 1 2017 In : Proteomics - Clinical Applications. 11, 7-8, 1700045

Research output: Research - peer-reviewArticle

Parkinson Disease
Cerebrospinal Fluid
Disease Progression

Analyses of germline variants associated with ovarian cancer survival identify functional candidates at the 1q22 and 19p12 outcome loci

Glubb, D. M. , Johnatty, S. E. , Quinn, M. C. J. , O'Mara, T. A. , Tyrer, J. P. , Gao, B. , Fasching, P. A. , Beckmann, M. W. , Lambrechts, D. , Vergote, I. , Edwards, D. R. V. , Beeghly-Fadiel, A. , Benitez, J. , Garcia, M. J. , Goodman, M. T. , Thompson, P. J. , Dörk, T. , Dürst, M. , Modungo, F. , Moysich, K. & 39 others Heitz, F., du Bois, A., Pfisterer, J., Hillemanns, P., Karlan, B. Y., Lester, J., Goode, E. L., Cunningham, J. M., Winham, S. J., Larson, M. C., McCauley, B. M., Kjær, S. K., Jensen, A., Schildkraut, J. M., Berchuck, A., Cramer, D. W., Terry, K. L., Salvesen, H. B., Bjorge, L., Webb, P. M., Grant, P., Pejovic, T., Moffitt, M., Hogdall, C. K., Hogdall, E., Paul, J., Glasspool, R., Bernardini, M., Tone, A., Huntsman, D., Woo, M., de Fazio, A., Kennedy, C. J., Pharoah, P. D. P., MacGregor, S., Chenevix-Trench, G., AOCS Group, AOCS Group & On behalf of the AGO Study Group 2017 In : Oncotarget. 8, 39, p. 64670-64684 15 p.

Research output: Research - peer-reviewArticle

Ovarian Neoplasms
Genetic Loci
Computational Biology
Genetic Promoter Regions
1 Citations

Analysis of acquired mutations in transgenes arising in Ba/F3 transformation assays: Findings and recommendations

Watanabe-Smith, K., Godil, J., Agarwal, A., Tognon, C. & Druker, B. 2017 In : Oncotarget. 8, 8, p. 12596-12606 11 p.

Research output: Research - peer-reviewArticle

Intercellular Signaling Peptides and Proteins
Cytokine Receptors
6 Citations

Analysis of circulating cell-free DnA identifies multiclonal heterogeneity of BRCA2 reversion mutations associated with resistance to PARP inhibitors

Quigley, D. , Alumkal, J. J. , Wyatt, A. W. , Kothari, V. , Foye, A. , Lloyd, P. , Aggarwal, R. , Kim, W. , Lu, E. , Schwartzman, J. , Beja, K. , Annala, M. , Das, R. , Diolaiti, M. , Pritchard, C. , Thomas, G. , Tomlins, S. , Knudsen, K. , Lord, C. J. , Ryan, C. & 5 others Youngren, J., Beer, T. M., Ashworth, A., Small, E. J. & Feng, F. Y. Sep 1 2017 In : Cancer Discovery. 7, 9, p. 999-1005 7 p.

Research output: Research - peer-reviewArticle

Prostatic Neoplasms
Poly(ADP-ribose) Polymerase Inhibitors
Recombinational DNA Repair

Analysis of factors associated with electing endoscopic sinus surgery

Deconde, A. S., Mace, J. C., Ramakrishnan, V. R., Alt, J. A. & Smith, T. L. 2017 (Accepted/In press) In : Laryngoscope.

Research output: Research - peer-reviewArticle

Statistical Factor Analysis
Social Adjustment
3 Citations

Analysis of false-negative human immunodeficiency virus rapid tests performed on oral fluid in 3 international clinical research studies

Curlin, M. E., Gvetadze, R., Leelawiwat, W., Martin, M., Rose, C., Niska, R. W., Segolodi, T. M., Choopanya, K., Tongtoyai, J., Holtz, T. H., Samandari, T. & Mcnicholl, J. M. Jun 15 2017 In : Clinical Infectious Diseases. 64, 12, p. 1663-1669 7 p.

Research output: Research - peer-reviewArticle

Clinical Studies
Nucleic Acid Amplification Techniques

Analysis of K-Ras interactions by biotin ligase tagging

Ritchie, C., Mack, A., Harper, L., Alfadhli, A., Stork, P. J. S., Nan, X. & Barklis, E. Jul 1 2017 In : Cancer Genomics and Proteomics. 14, 4, p. 225-239 15 p.

Research output: Research - peer-reviewArticle

ras Proteins

Analysis of the Proteome of Hair-Cell Stereocilia by Mass Spectrometry

Krey, J. F., Wilmarth, P. A., David, L. L. & Barr-Gillespie, P. G. 2017 Methods in Enzymology. Academic Press Inc., Vol. 585, p. 329-354 26 p. (Methods in Enzymology; vol. 585)

Research output: ResearchChapter

Mass Spectrometry

Analysis of viral and cellular microRNAs in EBV-infected cells

Skalsky, R. L. 2017 Methods in Molecular Biology. Humana Press Inc., Vol. 1532, p. 133-146 14 p. (Methods in Molecular Biology; vol. 1532)

Research output: ResearchChapter

Human Herpesvirus 4
Small Untranslated RNA
Epstein-Barr Virus Infections
2 Citations

An Amperometric Glucose Sensor Integrated into an Insulin Delivery Cannula: In Vitro and in Vivo Evaluation

Ward, W. K., Heinrich, G., Breen, M., Benware, S., Vollum, N., Morris, K., Knutsen, C., Kowalski, J. D., Campbell, S., Biehler, J., Vreeke, M. S., Vanderwerf, S. M., Castle, J. R. & Cargill, R. S. Apr 1 2017 In : Diabetes Technology and Therapeutics. 19, 4, p. 226-236 11 p.

Research output: Research - peer-reviewArticle

In Vitro Techniques

An anthropometric survey of US pre-term and full-term neonates

Abdel-Rahman, S. M., Paul, I. M., Delmore, P., James, L., Fearn, L., Atz, A. M., Poindexter, B. B., Al-Uzri, A., Lewandowski, A., Harper, B. L., Smith, P. B. & for the Best Pharmaceuticals for Children Act – Pediatric Trials Network Nov 8 2017 (Accepted/In press) In : Annals of Human Biology. p. 1-9 9 p.

Research output: Research - peer-reviewArticle

Newborn Infant
Surveys and Questionnaires
Gestational Age

Androgen receptor mutations in patients with castration-resistant prostate cancer treated with apalutamide

Rathkopf, D. E. , Smith, M. R. , Ryan, C. J. , Berry, W. R. , Shore, N. D. , Liu, G. , Higano, C. S. , Alumkal, J. J. , Hauke, R. , Tutrone, R. F. , Saleh, M. , Maneval, E. C. , Thomas, S. , Ricci, D. S. , Yu, M. K. , de Boer, C. J. , Trinh, A. , Kheoh, T. , Bandekar, R. , Scher, H. I. & 1 others Antonarakis, E. S. 2017 In : Annals of Oncology. 28, 9, p. 2264-2271 8 p.

Research output: Research - peer-reviewArticle

Androgen Receptors
Prostatic Neoplasms
1 Citations

Androgen supplementation improves some but not all aspects of immune senescence in aged male macaques

Rais, M., Wilson, R. M., Urbanski, H. F. & Messaoudi, I. Jun 14 2017 (Accepted/In press) In : GeroScience. p. 1-12 12 p.

Research output: Research - peer-reviewArticle

1 Citations

Anemia: Evaluation and Diagnostic Tests

Cascio, M. J. & DeLoughery, T. G. Mar 1 2017 In : Medical Clinics of North America. 101, 2, p. 263-284 22 p.

Research output: Research - peer-reviewReview article

Routine Diagnostic Tests
Bone Marrow Examination
Reticulocyte Count
Erythrocyte Indices

Anemia: Things Have Changed!

DeLoughery, T. G. Mar 1 2017 In : Medical Clinics of North America. 101, 2, p. xv-xvi

Research output: Research - peer-reviewEditorial

An Epstein-Barr virus microRNA blocks interleukin-1 (IL-1) signaling by targeting IL-1 receptor 1

Skinner, C. M., Ivanov, N. S., Barr, S. A., Chen, Y. & Skalsky, R. L. Nov 1 2017 In : Journal of Virology. 91, 21, e00530-17

Research output: Research - peer-reviewArticle

Interleukin-1 Receptors
Human Herpesvirus 4
Human herpesvirus 4
3 Citations

A newborn screening method for cerebrotendinous xanthomatosis using bile alcohol glucuronides and metabolite ratios

Vaz, F. M., Bootsma, A. H., Kulik, W., Verrips, A., Wevers, R. A., Schielen, P. C., DeBarber, A. E. & Huidekoper, H. H. May 1 2017 In : Journal of Lipid Research. 58, 5, p. 1002-1007 6 p.

Research output: Research - peer-reviewArticle

Taurochenodeoxycholic Acid
Bile Acids and Salts
9 Citations

A new chicken genome assembly provides insight into avian genome structure

Warren, W. C. , Hillier, L. D. W. , Tomlinson, C. , Minx, P. , Kremitzki, M. , Graves, T. , Markovic, C. , Bouk, N. , Pruitt, K. D. , Thibaud-Nissen, F. , Schneider, V. , Mansour, T. A. , Brown, C. T. , Zimin, A. , Hawken, R. , Abrahamsen, M. , Pyrkosz, A. B. , Morisson, M. , Fillon, V. , Vignal, A. & 12 others Chow, W., Howe, K., Fulton, J. E., Miller, M. M., Lovell, P., Mello, C. V., Wirthlin, M., Mason, A. S., Kuo, R., Burt, D. W., Dodgson, J. B. & Cheng, H. H. 2017 In : G3: Genes, Genomes, Genetics. 7, 1, p. 109-117 9 p.

Research output: Research - peer-reviewArticle

Gene Dosage
1 Citations

An fMRI-compatible force measurement system for the evaluation of the neural correlates of step initiation

De Lima-Pardini, A. C., De Azevedo Neto, R. M. H., Coelho, D. B., Boffino, C. C., Shergill, S. S., De Oliveira Souza, C., Brant, R., Barbosa, E. R., Cardoso, E. F., Teixeira, L. A., Cohen, R. G., Horak, F. B. & Amaro, E. Feb 23 2017 In : Scientific Reports. 7, 43088

Research output: Research - peer-reviewArticle

Magnetic Resonance Imaging
Parkinson Disease
Equipment and Supplies

Angiographic and structural imaging using high axial resolution fiber-based visible-light OCT

Pi, S., Camino, A., Zhang, M., Cepurna, W., Liu, G., Huang, D., Morrison, J. & Jia, Y. Oct 1 2017 In : Biomedical Optics Express. 8, 10, p. 4595-4608 14 p., #304064

Research output: Research - peer-reviewArticle


Animal Models of Alzheimer's Disease

Newman, M., Kretzschmar, D., Khan, I., Chen, M., Verdile, G. & Lardelli, M. Jun 28 2017 Animal Models for the Study of Human Disease: Second Edition. Elsevier Inc., p. 1031-1085 55 p.

Research output: ResearchChapter

Alzheimer Disease
Animal Models
Transgenic Mice
1 Citations

Animal welfare: Make animal models more meaningful

Lahvis, G. Mar 29 2017 In : Nature. 543, 7647, p. 623 1 p.

Research output: Research - peer-reviewLetter

An initiative to optimize waste streams in the operating room: RECycling in the operating room (RECOR) project

Martin, D. M., Yanez, N. D. & Treggiari, M. M. Apr 1 2017 In : AANA Journal. 85, 2, p. 108-112 5 p.

Research output: Research - peer-reviewArticle

Operating Rooms
Weights and Measures
Medical Waste
Solid Waste

An integration-free, virus-free rhesus macaque induced pluripotent stem cell line (riPSC90) from embryonic fibroblasts

Sosa, E., Kim, R., Rojas, E. J., Hosohama, L., Hennebold, J. D., Orwig, K. E. & Clark, A. T. May 1 2017 In : Stem Cell Research. 21, p. 5-8 4 p.

Research output: Research - peer-reviewArticle

Virus Integration
Induced Pluripotent Stem Cells
Macaca mulatta
Cell Line

An International Evaluation of Cognitive Reserve and Memory Changes in Early Old Age in 10 European Countries

Cadar, D., Robitaille, A., Clouston, S., Hofer, S. M., Piccinin, A. M. & Muniz-Terrera, G. Feb 21 2017 (Accepted/In press) In : Neuroepidemiology. p. 9-20 12 p.

Research output: Research - peer-reviewArticle

Cognitive Reserve
Short-Term Memory
Repression (Psychology)
4 Citations

An official American thoracic society research statement: Current challenges facing research and therapeutic advances in airway remodeling

Prakash, Y. S. , Halayko, A. J. , Gosens, R. , Panettieri, R. A. , Camoretti-Mercado, B. , Penn, R. B. , Aiyar, R. , Ammit, A. , Berkman, N. , Bond, R. , Brown, R. , Boulet, L. , Burgess, J. , Chung, K. F. , Debley, J. , Deshpande, D. , Freemer, M. , Glass, M. , Haczku, A. , Holgate, S. & 19 others Irvin, C., Jacoby, D., Johnson, J., Meurs, H., Murphy, T., Murthy, M., Noel, P., O'Byrne, P., Pabelick, C., Pera, T., Poynter, M., Robinson, G., Saglani, S., Solway, J., Stewart, A., Tliba, O., Togias, A., Woodruff, P. & ATS Assembly on Respiratory Structure and Function Jan 15 2017 In : American Journal of Respiratory and Critical Care Medicine. 195, 2, p. e4-e19

Research output: Research - peer-reviewReview article

Therapeutic Human Experimentation
Airway Remodeling
1 Citations

A Nonheme, High-Spin {FeNO}8 Complex that Spontaneously Generates N2O

Confer, A. M., McQuilken, A. C., Matsumura, H., Moënne-Loccoz, P. & Goldberg, D. P. Aug 9 2017 In : Journal of the American Chemical Society. 139, 31, p. 10621-10624 4 p.

Research output: Research - peer-reviewArticle

Nitric oxide
nitric-oxide reductase
1 Citations

A novel agonist of the trif pathway induces a cellular state refractory to replication of Zika, Chikungunya, and dengue viruses

Pryke, K. M., Abraham, J., Sali, T. M., Gall, B. J., Archer, I., Liu, A., Bambina, S., Baird, J., Gough, M., Chakhtoura, M., Haddad, E. K., Kirby, I. T., Nilsen, A., Streblow, D. N., Hirsch, A. J., Smith, J. L. & Defilippis, V. R. May 1 2017 In : mBio. 8, 3, e00452-17

Research output: Research - peer-reviewArticle

Chikungunya virus
Dengue Virus
Zika Virus
Interferon Type I
1 Citations

A Novel Dominant Mutation in SAG, the Arrestin-1 Gene, Is a Common Cause of Retinitis Pigmentosa in Hispanic Families in the Southwestern United States

Sullivan, L. S., Bowne, S. J., Koboldt, D. C., Cadena, E. L., Heckenlively, J. R., Branham, K. E., Wheaton, D. H., Jones, K. D., Ruiz, R. S., Pennesi, M. E., Yang, P., Davis-Boozer, D., Northrup, H., Gurevich, V. V., Chen, R., Xu, M., Li, Y., Birch, D. G. & Daiger, S. P. May 1 2017 In : Investigative ophthalmology & visual science. 58, 5, p. 2774-2784 11 p.

Research output: Research - peer-reviewArticle

Southwestern United States
Retinitis Pigmentosa
Hispanic Americans

A novel Drosophila injury model reveals severed axons are cleared through a draper/MMP-1 signaling cascade

Purice, M. D., Ray, A., Münzel, E. J., Pope, B. J., Park, D. J., Speese, S. D. & Logan, M. A. Aug 21 2017 In : eLife. 6, e23611

Research output: Research - peer-reviewArticle

Matrix Metalloproteinase 1
Wounds and Injuries

A novel educational intervention targeting melanoma risk and prevention knowledge among children with a familial risk for melanoma

Wu, Y. P., Nagelhout, E., Aspinwall, L. G., Boucher, K. M., Parsons, B. G., Kohlmann, W., Kaphingst, K. A., Homburger, S., Perkins, R. D., Grossman, D., Harding, G. & Leachman, S. A. 2017 (Accepted/In press) In : Patient Education and Counseling.

Research output: Research - peer-reviewArticle

Cutaneous Malignant Melanoma
Solar System

A Novel Strategy to Engineer Pre-Vascularized Full-Length Dental Pulp-like Tissue Constructs

Athirasala, A., Lins, F., Tahayeri, A., Hinds, M., Smith, A. J., Sedgley, C., Ferracane, J. & Bertassoni, L. E. Dec 1 2017 In : Scientific Reports. 7, 1, 3323

Research output: Research - peer-reviewArticle

Dental Pulp
Dental Pulp Cavity
Wounds and Injuries
3 Citations

An overview of voice conversion systems

Mohammadi, S. H. & Kain, A. Apr 1 2017 In : Speech Communication. 88, p. 65-82 18 p.

Research output: Research - peer-reviewReview article

Voice Conversion
Speech Signal

Anterior cingulate cortex contributes to alcohol withdrawal- induced and socially transferred hyperalgesia

Smith, M. L., Walcott, A. T., Heinricher, M. M. & Ryabinin, A. E. Jul 24 2017 In : eNeuro. 4, 4, e0087

Research output: Research - peer-reviewArticle

Gyrus Cinguli
Alcohol Drinking
2 Citations

Anterograde Transport of Rab4-Associated Vesicles Regulates Synapse Organization in Drosophila

Dey, S., Banker, G. & Ray, K. Mar 7 2017 In : Cell Reports. 18, 10, p. 2452-2463 12 p.

Research output: Research - peer-reviewArticle

Tacrolimus Binding Proteins

Antibiotic Use in 2016 by Members of the American Association of Endodontists: Report of a National Survey

Germack, M., Sedgley, C. M., Sabbah, W. & Whitten, B. 2017 (Accepted/In press) In : Journal of Endodontics.

Research output: Research - peer-reviewArticle

Anti-Bacterial Agents
Surveys and Questionnaires
Penicillin V
1 Citations
Parkinson Disease
Healthy Volunteers
Antiparkinson Agents

Anti-diabetic drug binding site in a mammalian KATP channel revealed by Cryo-EM

Martin, G. M., Kandasamy, B., Dimaio, F., Yoshioka, C. & Shyng, S. L. Oct 16 2017 In : eLife. 6, e31054

Research output: Research - peer-reviewArticle

Adenosine Triphosphate
Binding Sites
Pharmaceutical Preparations
Lipid Bilayers
1 Citations

Anti-HERV-K (HML-2) capsid antibody responses in HIV elite controllers

de Mulder, M., SenGupta, D., Deeks, S. G., Martin, J. N., Pilcher, C. D., Hecht, F. M., Sacha, J. B., Nixon, D. F. & Michaud, H. A. Aug 22 2017 In : Retrovirology. 14, 1, 41

Research output: Research - peer-reviewArticle

Endogenous Retroviruses
Antibody Formation
24 Citations

Anti-interleukin-31 receptor a antibody for atopic dermatitis

Ruzicka, T., Hanifin, J. M., Furue, M., Pulka, G., Mlynarczyk, I., Wollenberg, A., Galus, R., Etoh, T., Mihara, R., Yoshida, H., Stewart, J. & Kabashima, K. Mar 2 2017 In : New England Journal of Medicine. 376, 9, p. 826-835 10 p.

Research output: Research - peer-reviewArticle

Interleukin Receptors
Atopic Dermatitis
1 Citations

Antimicrobial-resistant infections among postpartum women at a Ugandan referral hospital

Bebell, L. M., Ngonzi, J., Bazira, J., Fajardo, Y., Boatin, A. A., Siedner, M. J., Bassett, I. V., Nyehangane, D., Nanjebe, D., Jacquemyn, Y., Van Geertruyden, J. P., Mwanga-Amumpaire, J., Bangsberg, D. R., Riley, L. E. & Boum, Y. Apr 1 2017 In : PLoS ONE. 12, 4, e0175456

Research output: Research - peer-reviewArticle

anti-infective agents

Anti-Muslim Racism and Women's Health

Hassouneh, D. May 1 2017 In : Journal of Women's Health. 26, 5, p. 401-402 2 p.

Research output: Research - peer-reviewEditorial

Aortic Dilatation Associated With Bicuspid Aortic Valve: Relation to Sex, Hemodynamics, and Valve Morphology (the National Heart Lung and Blood Institute-Sponsored National Registry of Genetically Triggered Thoracic Aortic Aneurysms and Cardiovascular Conditions)

Roman, M. J., Pugh, N. L., Devereux, R. B., Eagle, K. A., Holmes, K., LeMaire, S. A., Milewski, R. K., Morris, S. A., Prakash, S. K., Pyeritz, R. E., Ravekes, W. J., Shohet, R. V., Song, H. K. & Asch, F. M. 2017 (Accepted/In press) In : American Journal of Cardiology.

Research output: Research - peer-reviewArticle

National Heart, Lung, and Blood Institute (U.S.)
Thoracic Aortic Aneurysm
Aortic Valve Insufficiency
Aortic Valve Stenosis

Apgar Scores: Two Methodologic Studies Exploring Their Use in Research

Caughey, A. B. Jul 1 2017 In : Paediatric and Perinatal Epidemiology. 31, 4, p. 346-347 2 p.

Research output: Research - peer-reviewComment/debate

A Phase 1/2 Trial of a Combination of Paclitaxel and Trastuzumab With Daily Irradiation or Paclitaxel Alone With Daily Irradiation After Transurethral Surgery for Noncystectomy Candidates With Muscle-Invasive Bladder Cancer (Trial NRG Oncology RTOG 0524)

Michaelson, M. D., Hu, C., Pham, H. T., Dahl, D. M., Lee-Wu, C., Swanson, G. P., Vuky, J., Lee, R. J., Souhami, L., Chang, B., George, A., Sandler, H. & Shipley, W. Apr 1 2017 In : International Journal of Radiation Oncology Biology Physics. 97, 5, p. 995-1001 7 p.

Research output: Research - peer-reviewArticle


A phase II randomized placebo-controlled trial of oral n-acetylcysteine for protection of melanocytic nevi against uv-induced oxidative stress in vivo

Cassidy, P. B., Liu, T., Florell, S. R., Honeggar, M., Leachman, S. A., Boucher, K. M. & Grossman, D. Jan 1 2017 In : Cancer Prevention Research. 10, 1, p. 36-44 9 p.

Research output: Research - peer-reviewArticle

Pigmented Nevus
Oxidative Stress
Randomized Controlled Trials

A pilot clinical trial of recombinant human angiotensin-converting enzyme 2 in acute respiratory distress syndrome

Khan, A., Benthin, C., Zeno, B., Albertson, T. E., Boyd, J., Christie, J. D., Hall, R., Poirier, G., Ronco, J. J., Tidswell, M., Hardes, K., Powley, W. M., Wright, T. J., Siederer, S. K., Fairman, D. A., Lipson, D. A., Bayliffe, A. I. & Lazaar, A. L. Sep 7 2017 In : Critical Care. 21, 1, 234

Research output: Research - peer-reviewArticle

Adult Respiratory Distress Syndrome
Clinical Trials
angiotensin converting enzyme 2
Renin-Angiotensin System