Find Publications

2019

A Meta-analysis of Passive Immunization Studies Shows that Serum-Neutralizing Antibody Titer Associates with Protection against SHIV Challenge

Pegu, A., Borate, B., Huang, Y., Pauthner, M. G., Hessell, A., Julg, B., Doria-Rose, N. A., Schmidt, S. D., Carpp, L. N., Cully, M. D., Chen, X., Shaw, G. M., Barouch, D. H., Haigwood, N., Corey, L., Burton, D. R., Roederer, M., Gilbert, P. B., Mascola, J. R. & Huang, Y., Sep 11 2019, In : Cell Host and Microbe. 26, 3, p. 336-346.e3

Research output: Contribution to journalArticle

Simian Immunodeficiency Virus
Passive Immunization
Neutralizing Antibodies
Meta-Analysis
HIV
5 Citations (Scopus)

Aminoglycoside- and cisplatin-induced ototoxicity: Mechanisms and otoprotective strategies

Kros, C. J. & Steyger, P. S., Nov 2019, In : Cold Spring Harbor Perspectives in Medicine. 9, 11, a033548.

Research output: Contribution to journalArticle

Audition
Aminoglycosides
Cisplatin
Cochlea
Environmental Exposure
2 Citations (Scopus)

A Missing Link: Sarcoid-Lymphoma Syndrome

Kumthekar, A., Raess, P. & Ghetie, E. D., Jan 1 2019, In : American Journal of Medicine. 132, 1, p. 48-51 4 p.

Research output: Contribution to journalComment/debate

Sarcoidosis
Hodgkin Disease
Lymphoma
Neoplasms

A modified flavonoid accelerates oligodendrocyte maturation and functional remyelination

Su, W., Matsumoto, S., Banine, F., Srivastava, T., Dean, J., Foster, S., Pham, P., Hammond, B., Peters, A., Girish, K. S., Rangappa, K. S., Basappa, Jose, J., Hennebold, J., Murphy, M. J., Bennett-Toomey, J., Back, S. & Sherman, L. L., Jan 1 2019, (Accepted/In press) In : GLIA.

Research output: Contribution to journalArticle

Oligodendroglia
Hyaluronoglucosaminidase
Flavonoids
Stem Cells
Central Nervous System

A Modular Approach to Vocal Learning: Disentangling the Diversity of a Complex Behavioral Trait

Wirthlin, M., Chang, E. F., Knörnschild, M., Krubitzer, L. A., Mello, C. V., Miller, C. T., Pfenning, A. R., Vernes, S. C., Tchernichovski, O. & Yartsev, M. M., Oct 9 2019, In : Neuron. 104, 1, p. 87-99 13 p.

Research output: Contribution to journalReview article

Learning
Phenotype
Molecular Evolution
Social Environment
Neurosciences
1 Citation (Scopus)

AMP-activated protein kinase slows D2 dopamine autoreceptor desensitization in substantia nigra neurons

Yang, W., Munhall, A. C. & Johnson, S., Nov 1 2019, In : Neuropharmacology. 158, 107705.

Research output: Contribution to journalArticle

Autoreceptors
AMP-Activated Protein Kinases
Substantia Nigra
Dopamine
Quinpirole
1 Citation (Scopus)

AMPA receptor and metabotropic glutamate receptor 1 adaptations in the nucleus accumbens core during incubation of methamphetamine craving

Murray, C. H., Loweth, J. A., Milovanovic, M., Stefanik, M. T., Caccamise, A. J., Dolubizno, H., Funke, J. R., Foster Olive, M. & Wolf, M., Jan 1 2019, In : Neuropsychopharmacology.

Research output: Contribution to journalArticle

AMPA Receptors
Methamphetamine
Nucleus Accumbens
Cocaine
Synapses
5 Citations (Scopus)

Amphetamines signal through intracellular TAAR1 receptors coupled to Gα13 and GαS in discrete subcellular domains

Underhill, S. M., Hullihen, P. D., Chen, J., Fenollar-Ferrer, C., Rizzo, M. A., Ingram, S. & Amara, S. G., Jan 1 2019, (Accepted/In press) In : Molecular Psychiatry.

Research output: Contribution to journalArticle

Open Access
Amphetamines
Amphetamine
Dopaminergic Neurons
Amines
rhoA GTP-Binding Protein

AMSSM position statement update: Blood-borne pathogens in the context of sports participation

McGrew, C., Maccallum, D. S., Narducci, D., Nuti, R., Calabrese, L., Dimeff, R. J., Paul, S., Poddar, S., Rao, A. & McKeag, D., Jan 1 2019, In : British journal of sports medicine.

Research output: Contribution to journalArticle

Open Access
Blood-Borne Pathogens
Sports
Athletes
Exercise
Universal Precautions

A Multicenter Evaluation of a Firearm Safety Intervention in the Pediatric Outpatient Setting

Campbell, B. T., Thaker, S., Fallat, M. E., Foley, D. S., McClure, E., Sakran, J. V., Nasr, I. W., Ziegfeld, S., Ehrlich, P. F., Snodgrass, M., Levy, M., Naik-Mathuria, B. J., Johnson, B., Demello, A. S., Jones, S., Watters, J. M., Burke, P., Allee, L., Kozyckyj, T., Letton, R. W. & 3 others, Kuhls, D. A., Bulger, E. M. & Stewart, R. M., Jan 1 2019, (Accepted/In press) In : Journal of pediatric surgery.

Research output: Contribution to journalReview article

Firearms
Outpatients
Pediatrics
Safety
Parents

A Multi-study Coordinated Meta-analysis of Pulmonary Function and Cognition in Aging

Duggan, E. C., Piccinin, A. M., Clouston, S., Koval, A. V., Robitaille, A., Zammit, A. R., Wu, C., Brown, C. L., Lee, L. O., Finkel, D., Beasley, W. H., Kaye, J., Terrera, G. M., Katz, M., Lipton, R. B., Deeg, D., Bennett, D. A., Praetorius Björk, M., Johansson, B., Spiro, A. & 2 others, Weuve, J. & Hofer, S. M., Oct 4 2019, In : Journals of Gerontology - Series A Biological Sciences and Medical Sciences. 74, 11, p. 1793-1804 12 p.

Research output: Contribution to journalArticle

Open Access
Cognition
Meta-Analysis
Lung
Individuality
Longitudinal Studies

A multitask multiple kernel learning algorithm for survival analysis with application to cancer biology

Dereli, O., Oǧuz, C. & Gönen, M., Jan 1 2019, 36th International Conference on Machine Learning, ICML 2019. International Machine Learning Society (IMLS), p. 2844-2853 10 p. (36th International Conference on Machine Learning, ICML 2019; vol. 2019-June).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Learning algorithms
biology
cancer
Genes
learning
2 Citations (Scopus)

Amyloid beta and micrornas in Alzheimer's disease

Amakiri, N., Kubosumi, A., Tran, J. & Reddy, P. H., Jan 1 2019, In : Frontiers in Neuroscience. 13, MAY, 430.

Research output: Contribution to journalReview article

Open Access
MicroRNAs
Amyloid
Alzheimer Disease
Amyloid beta-Protein Precursor
Molecular Biology
13 Citations (Scopus)

Amyloid β oligomers constrict human capillaries in alzheimer’s disease via signaling to pericytes

Nortley, R., Korte, N., Izquierdo, P., Hirunpattarasilp, C., Mishra, A., Jaunmuktane, Z., Kyrargyri, V., Pfeiffer, T., Khennouf, L., Madry, C., Gong, H., Richard-Loendt, A., Huang, W., Saito, T., Saido, T. C., Brandner, S., Sethi, H. & Attwell, D., Jan 1 2019, In : Science.

Research output: Contribution to journalArticle

Pericytes
Amyloid
Alzheimer Disease
Constriction
Cerebrovascular Circulation

An abundance of seafood consumption studies presents new opportunities to evaluate effects on neurocognitive development

Spiller, P., Hibbeln, J. R., Myers, G., Vannice, G., Golding, J., Crawford, M. A., Strain, J. J., Connor, S. L., Brenna, J. T., Kris-Etherton, P., Holub, B. J., Harris, W. S., Lands, B., McNamara, R. K., Tlusty, M. F., Salem, N. & Carlson, S. E., Dec 2019, In : Prostaglandins Leukotrienes and Essential Fatty Acids. 151, p. 8-13 6 p.

Research output: Contribution to journalReview article

Open Access
Seafood
Health
Food safety
Nutrition
Mercury
1 Citation (Scopus)

Anal intraepithelial neoplasia: Diagnosis, screening, and treatment

Siddharthana, R. V., Lanciault, C. & Tsikitis, V., May 3 2019, In : Annals of Gastroenterology. 32, 3, p. 257-263 7 p.

Research output: Contribution to journalArticle

Open Access
Papillomaviridae
Anus Neoplasms
Virus Diseases
Neoplasms
Therapeutics
1 Citation (Scopus)

Analysis of 100 high-coverage genomes from a pedigreed captive baboon colony

Robinson, J. A., Belsare, S., Birnbaum, S., Newman, D. E., Chan, J., Glenn, J. P., Ferguson, B., Cox, L. A. & Wall, J. D., May 1 2019, In : Genome Research. 29, 5, p. 848-856 9 p.

Research output: Contribution to journalArticle

Open Access
Papio
Genome
Primates
Research
Inbreeding

Analysis of Complications with Staged Surgery for Less Invasive Treatment of Adult Spinal Deformity

International Spine Study Group, Jan 1 2019, In : World Neurosurgery.

Research output: Contribution to journalArticle

Therapeutics
Intraoperative Complications
Reoperation
Minimally Invasive Surgical Procedures
Nervous System
3 Citations (Scopus)
Drug Approval
Quality Control
Randomized Controlled Trials
Standard of Care
Antineoplastic Agents
12 Citations (Scopus)

Analysis of convective and diffusive transport in the brain interstitium

Ray, L., Iliff, J. & Heys, J. J., Mar 6 2019, In : Fluids and Barriers of the CNS. 16, 1, 6.

Research output: Contribution to journalArticle

Open Access
Brain
Convection
Research Personnel
Neuropathology
2 Citations (Scopus)

Analysis of Diagnoses, Symptoms, Medications, and Admissions Among Patients With Cancer Presenting to Emergency Departments

Caterino, J. M., Adler, D., Durham, D. D., Yeung, S. C. J., Hudson, M. F., Bastani, A., Bernstein, S. L., Baugh, C. W., Coyne, C. J., Grudzen, C. R., Henning, D. J., Klotz, A., Madsen, T. E., Pallin, D. J., Reyes-Gibby, C. C., Rico, J. F., Ryan, R. J., Shapiro, N. I., Swor, R., Venkat, A. & 4 others, Wilson, J., Thomas, C., Bischof, J. J. & Lyman, G. H., Mar 1 2019, In : JAMA network open. 2, 3, p. e190979

Research output: Contribution to journalArticle

Open Access
Patient Admission
Hospital Emergency Service
Neoplasms
Pain
Length of Stay
3 Citations (Scopus)

Analysis of HIV-1 Matrix-Envelope Cytoplasmic Tail Interactions

Alfadhli, A., Staubus, A. O., Tedbury, P. R., Novikova, M., Freed, E. O. & Barklis, E., Nov 1 2019, In : Journal of virology. 93, 21

Research output: Contribution to journalArticle

Human immunodeficiency virus 1
gag Gene Products
HIV-1
tail
Virion

Analysis of interleukin-20 receptor complexes in trabecular meshwork cells and effects of cytokine signaling in anterior segment perfusion culture

Keller, K., Yang, Y. F., Sun, Y. Y., Walter, M. R. & Wirtz, M. K., Jan 1 2019, In : Molecular vision. 25, p. 266-282 17 p.

Research output: Contribution to journalArticle

Trabecular Meshwork
Perfusion
Cytokines
Fibroblasts
Skin
Radiation Oncology
Internship and Residency
Publications
Research
Career Choice

Analysis of the ABCA4 c.[2588G>C;5603A>T] Allele in the Australian Population

Thompson, J. A., Chiang, J. P. W., De Roach, J. N., McLaren, T. L., Chen, F. K., Hoffmann, L., Campbell, I. & Lamey, T. M., Jan 1 2019, Advances in Experimental Medicine and Biology. Springer, p. 269-273 5 p. (Advances in Experimental Medicine and Biology; vol. 1185).

Research output: Chapter in Book/Report/Conference proceedingChapter

Retinal Diseases
Alleles
Population
Precision Medicine
Morbidity
3 Citations (Scopus)

Analysis of the MILES cohort reveals determinants of disease progression and treatment response in lymphangioleiomyomatosis

for the NIH Rare Lung Disease Consortium, Apr 1 2019, In : European Respiratory Journal. 53, 4, 1802066.

Research output: Contribution to journalArticle

Lymphangioleiomyomatosis
Sirolimus
Disease Progression
Cohort Studies
Bronchodilator Agents
1 Citation (Scopus)

Analytical and Clinical Validation of Expressed Variants and Fusions From the Whole Transcriptome of Thyroid FNA Samples

Angell, T. E., Wirth, L. J., Cabanillas, M. E., Shindo, M. L., Cibas, E. S., Babiarz, J. E., Hao, Y., Kim, S. Y., Walsh, P. S., Huang, J., Kloos, R. T., Kennedy, G. C. & Waguespack, S. G., Sep 11 2019, In : Frontiers in Endocrinology. 10, 612.

Research output: Contribution to journalArticle

Open Access
Atlases
Transcriptome
Thyroid Gland
RNA
Thyroid Nodule

Analytical Validation of a Highly Sensitive, Multiplexed Chronic Myeloid Leukemia Monitoring System Targeting BCR-ABL1 RNA

Brown, J. T., Beldorth, I. J., Laosinchai-Wolf, W., Fahey, M. E., Jefferson, K. L., Ruskin, A. K., Roth, J. J., Cai, L., Watt, C. D., Press, R., Yang, F., Hedges, J. B. & Andruss, B. F., Jul 1 2019, In : Journal of Molecular Diagnostics. 21, 4, p. 718-733 16 p.

Research output: Contribution to journalArticle

Open Access
Leukemia, Myelogenous, Chronic, BCR-ABL Positive
Protein-Tyrosine Kinases
RNA
Limit of Detection
Quality Control
3 Citations (Scopus)

An anaerobic bacterium host system for heterologous expression of natural product biosynthetic gene clusters

Hao, T., Xie, Z., Wang, M., Liu, L., Zhang, Y., Wang, W., Zhang, Z., Zhao, X., Li, P., Guo, Z., Gao, S., Lou, C., Zhang, G., Merritt, J., Horsman, G. P. & Chen, Y., Dec 1 2019, In : Nature communications. 10, 1, 3665.

Research output: Contribution to journalArticle

Open Access
Anaerobic Bacteria
Multigene Family
Biological Products
genes
bacteria

An analysis and metric of reusable data licensing practices for biomedical resources

Carbon, S., Champieux, R., McMurry, J. A., Winfree, L., Wyatt, L. R. & Haendel, M., Mar 1 2019, In : PloS one. 14, 3, e0213090.

Research output: Contribution to journalArticle

Open Access
research support
biomedical research
Licensure
drugs
Reusability

Anaplastic pleomorphic xanthoastrocytoma with leptomeningeal dissemination responsive to BRAF inhibition and bevacizumab

Thomas, A. A., Tucker, S. M., Nelson, C. J., Nickerson, J., Durham, S. R. & Homans, A. C., Jan 1 2019, In : Pediatric Blood and Cancer. 66, 1, e27465.

Research output: Contribution to journalLetter

Bevacizumab

An application of the Science Impact Framework to the Cancer Prevention and Control Research Network from 2014-2018

Ko, L. K., Jang, S. H., Friedman, D. B., Glanz, K., Leeman, J., Hannon, P. A., Shannon, J. J., Cole, A., Williams, R. & Vu, T., Jan 1 2019, (Accepted/In press) In : Preventive medicine. 105821.

Research output: Contribution to journalArticle

Centers for Disease Control and Prevention (U.S.)
Research
Neoplasms
Publications
Point-of-Care Systems
1 Citation (Scopus)
Sudden Cardiac Death
Cardiac Arrhythmias
Perioperative Period
Guidelines
Morbidity

A National Study of Oncology Nurses Discussing Cancer Clinical Trials With Patients

Flocke, S., Nock, N. L., Fulton, S., Margevicius, S., Manne, S., Meropol, N. J. & Daly, B. J., Jan 1 2019, In : Western journal of nursing research.

Research output: Contribution to journalArticle

Nurses
Clinical Trials
Neoplasms

Anatomical and diffusion MRI brain atlases of the fetal rhesus macaque brain at 85, 110 and 135 days gestation

Liu, Z., Wang, X., Newman, N., Grant, K. A., Studholme, C. & Kroenke, C. D., Jan 1 2019, (Accepted/In press) In : NeuroImage. 116310.

Research output: Contribution to journalArticle

Diffusion Magnetic Resonance Imaging
Atlases
Macaca mulatta
Pregnancy
Brain

Anatomical variation of the femoral nerve in the femoral triangle

Woodworth, G., Lee, T., Ivie, R. & Becket, B., Sep 1 2019, In : Regional anesthesia and pain medicine. 44, 9, p. 907-908 2 p.

Research output: Contribution to journalLetter

Femoral Nerve
Conduction Anesthesia
Thigh
Lower Extremity
Anatomy

Anatomic Lead Placement Without Paresthesia Mapping Provides Effective and Predictable Therapy During the Trial Evaluation Period: Results From the Prospective, Multicenter, Randomized, DELIVERY Study

Pope, J. E., Schu, S., Sayed, D., Raslan, A., Baranidharan, G., Heros, R. D., Blomme, B., Capobianco, R. A. & Deer, T. R., Jan 1 2019, In : Neuromodulation.

Research output: Contribution to journalArticle

Paresthesia
Pain
Spinal Cord Stimulation
Physicians
Therapeutics

A natural history model for planning prostate cancer testing: Calibration and validation using Swedish registry data

Karlsson, A., Jauhiainen, A., Gulati, R., Eklund, M., Grönberg, H., Etzioni, R. & Clements, M., Feb 1 2019, In : PloS one. 14, 2, e0211918.

Research output: Contribution to journalArticle

Open Access
prostatic neoplasms
Natural History
natural history
Calibration
Registries
1 Citation (Scopus)
Ventricular Tachycardia
Cicatrix
Ventricular Premature Complexes
Recurrence
Sensitivity and Specificity

Anesthesiology's Contribution to Environmental Preservation

Fink, R. J., Nov 1 2019, In : Anesthesia and analgesia. 129, 5, p. e179-e180

Research output: Contribution to journalArticle

Anesthesiology

A neutral lipid-enriched diet improves myelination and alleviates peripheral nerve pathology in neuropathic mice

Zhou, Y., Bazick, H., Miles, J. R., Fethiere, A. I., Salihi, M. O. A., Fazio, S., Tavori, H. & Notterpek, L., Nov 1 2019, In : Experimental Neurology. 321, 113031.

Research output: Contribution to journalArticle

Open Access
Peripheral Nerves
Pathology
Diet
Lipids
High Fat Diet

A new era for neuromyelitis optica spectrum disorder

Silbermann, E. & Bourdette, D., Oct 12 2019, In : The Lancet. 394, 10206, p. 1304-1305 2 p.

Research output: Contribution to journalComment/debate

Neuromyelitis Optica

An Examination of the Psychometric Properties of the Reasons for Living Inventory within a Male Veteran Clinical Sample

Chen, J., Osman, A., Freedenthal, S. L. & Gutierrez, P. M., Jan 1 2019, In : Archives of Suicide Research.

Research output: Contribution to journalArticle

Veterans
Psychometrics
Equipment and Supplies
Suicide
Statistical Factor Analysis
4 Citations (Scopus)

Animal Models of Hypertension: A Scientific Statement From the American Heart Association

Lerman, L. O., Kurtz, T. W., Touyz, R. M., Ellison, D. H., Chade, A. R., Crowley, S. D., Mattson, D. L., Mullins, J. J., Osborn, J., Eirin, A., Reckelhoff, J. F., Iadecola, C. & Coffman, T. M., Jun 1 2019, In : Hypertension (Dallas, Tex. : 1979). 73, 6, p. e87-e120

Research output: Contribution to journalArticle

Open Access
Animal Models
Hypertension
Comorbidity
Chronic Disease
Research Design

An interactive virtual reality tour for adolescents receiving proton radiation therapy: Proof-of-concept study

Galvez, J., Eisenhower, M., England, W., Wartman, E., Simpao, A., Rehman, M., Lustig, R. & Hribar, M., Mar 1 2019, In : Journal of medical Internet research. 21, 3, e11259.

Research output: Contribution to journalArticle

Open Access
Proton Therapy
Radiotherapy
User-Computer Interface
Patient Education
Diagnostic Imaging
1 Citation (Scopus)

An intramembrane sensory circuit monitors sortase A-mediated processing of streptococcal adhesins

Hall, J. W., Lima, B. P., Herbomel, G. G., Gopinath, T., McDonald, L. A., Shyne, M. T., Lee, J. K., Kreth, J., Ross, K. F., Veglia, G. & Herzberg, M. C., May 7 2019, In : Science signaling. 12, 580

Research output: Contribution to journalArticle

Biofilms
Bacteria
Cell membranes
Networks (circuits)
Processing

An in vitro comparison of ultraviolet versus white light in the detection of adhesive remnants during orthodontic debonding

Lai, C., Bush, P. J. B., Warunek, S., Covell, D. & Al-Jewair, T., Jan 1 2019, In : Angle Orthodontist. 89, 3, p. 438-445 8 p.

Research output: Contribution to journalArticle

Open Access
Orthodontics
Adhesives
Light
Lighting
Ultraviolet Rays
2 Citations (Scopus)

Ankyrin-B dysfunction predisposes to arrhythmogenic cardiomyopathy and is amenable to therapy

Roberts, J. D., Murphy, N. P., Hamilton, R. M., Lubbers, E. R., James, C. A., Kline, C. F., Gollob, M. H., Krahn, A. D., Sturm, A. C., Musa, H., El-Refaey, M., Koenig, S., Aneq, M. Å., Hoorntje, E. T., Graw, S. L., Davies, R. W., Rafiq, M. A., Koopmann, T. T., Aafaqi, S., Fatah, M. & 36 others, Chiasson, D. A., Taylor, M. R., Simmons, S. L., Han, M., van Opbergen, C. J., Wold, L. E., Sinagra, G., Mittal, K., Tichnell, C., Murray, B., Codima, A., Nazer, B., Nguyen, D. T., Marcus, F. I., Sobriera, N., Lodder, E. M., van den Berg, M. P., Spears, D. A., Robinson, J. F., Ursell, P. C., Green, A. K., Skanes, A. C., Tang, A. S., Gardner, M. J., Hegele, R. A., van Veen, T. A., Wilde, A. A. M., Healey, J. S., Janssen, P. M. L., Mestroni, L., van Tintelen, J. P., Calkins, H., Judge, D. P., Hund, T. J., Scheinman, M. M. & Mohler, P. J., Jul 2 2019, In : The Journal of clinical investigation. 130

Research output: Contribution to journalArticle

Open Access
Ankyrins
Catenins
Cardiomyopathies
Therapeutics
Phenotype

Annot: A Django-based sample, reagent, and experiment metadata tracking system

Bucher, E., Claunch, C. J., Hee, D., Smith, R. L., Devlin, K., Thompson, W., Korkola, J. E. & Heiser, L. M., Nov 1 2019, In : BMC bioinformatics. 20, 1, 542.

Research output: Contribution to journalArticle

Open Access
Tracking System
Metadata
Controlled Vocabulary
Laboratory Personnel
Network protocols
3 Citations (Scopus)

An observer blinded, randomized, placebo-controlled, phase I dose escalation trial to evaluate the safety and immunogenicity of an inactivated West Nile virus Vaccine, HydroVax-001, in healthy adults

Woods, C. W., Sanchez, A. M., Swamy, G. K., McClain, M. T., Harrington, L., Freeman, D., Poore, E. A., Slifka, D. K., Poer DeRaad, D. E., Amanna, I. J., Slifka, M., Cai, S., Shahamatdar, V., Wierzbicki, M. R., Amegashie, C. & Walter, E. B., Jan 1 2019, (Accepted/In press) In : Vaccine.

Research output: Contribution to journalArticle

West Nile Virus Vaccines
West Nile virus
Inactivated Vaccines
placebos
Placebos