Shawn Chavez

Assistant Scientist

  • 1265 Citations
  • 14 h-Index
20072021

Research output per year

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Research Output

  • 1265 Citations
  • 14 h-Index
  • 20 Article
  • 3 Chapter
  • 1 Editorial
  • 1 Short survey
2019

Assessing equine embryo developmental competency by time-lapse image analysis

Brooks, K. E., Daughtry, B. L., Metcalf, E., Masterson, K., Battaglia, D., Gao, L., Park, B. & Chavez, S. L., Jan 1 2019, In : Reproduction, Fertility and Development. 31, 12, p. 1840-1850 11 p.

Research output: Contribution to journalArticle

1 Scopus citations

Optimizing Tissue Preservation for High-Resolution Confocal Imaging of Single-Molecule RNA-FISH

Redmayne, N. & Chavez, S. L., Dec 1 2019, In : Current protocols in molecular biology. 129, 1, p. e107

Research output: Contribution to journalArticle

Single-cell sequencing of primate preimplantation embryos reveals chromosome elimination via cellular fragmentation and blastomere exclusion

Daughtry, B. L., Rosenkrantz, J. L., Lazar, N. H., Fei, S. S., Redmayne, N., Torkenczy, K. A., Adey, A., Yan, M., Gao, L., Park, B., Nevonen, K. A., Carbone, L. & Chavez, S., Mar 1 2019, In : Genome Research. 29, 3, p. 367-382 16 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations
2018

Time-lapse imaging for the detection of chromosomal abnormalities in primate preimplantation embryos

Daughtry, B. L. & Chavez, S., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 293-317 25 p. (Methods in Molecular Biology; vol. 1769).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations
2017

Endogenous retroviruses: With us and against us

Meyer, T. J., Rosenkrantz, J. L., Carbone, L. & Chavez, S., 2017, In : Frontiers in Chemistry. 5, APR, 23.

Research output: Contribution to journalShort survey

18 Scopus citations

GATA2/3-TFAP2A/C transcription factor network couples human pluripotent stem cell differentiation to trophectoderm with repression of pluripotency

Krendl, C., Shaposhnikov, D., Rishko, V., Ori, C., Ziegenhain, C., Sass, S., Simon, L., Müller, N. S., Straub, T., Brooks, K. E., Chavez, S., Enard, W., Theis, F. J. & Drukker, M., Nov 7 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 45, p. E9579-E9588

Research output: Contribution to journalArticle

13 Scopus citations
4 Scopus citations

Vertebrate embryonic cleavage pattern determination

Hasley, A., Chavez, S., Danilchik, M., Wühr, M. & Pelegri, F., 2017, Advances in Experimental Medicine and Biology. Springer New York LLC, Vol. 953. p. 117-171 55 p. (Advances in Experimental Medicine and Biology; vol. 953).

Research output: Chapter in Book/Report/Conference proceedingChapter

8 Scopus citations
2016

Chromosomal instability in mammalian pre-implantation embryos: potential causes, detection methods, and clinical consequences

Daughtry, B. L. & Chavez, S., Jan 1 2016, In : Cell and Tissue Research. 363, 1, p. 201-225 25 p.

Research output: Contribution to journalArticle

28 Scopus citations

IFPA meeting 2016 workshop report I: Genomic communication, bioinformatics, trophoblast biology and transport systems

Albrecht, C., Baker, J. C., Blundell, C., Chavez, S., Carbone, L., Chamley, L., Hannibal, R. L., Illsley, N., Kurre, P., Laurent, L. C., McKenzie, C., Morales-Prieto, D., Pantham, P., Paquette, A., Powell, K., Price, N., Rao, B. M., Sadovsky, Y., Salomon, C., Tuteja, G. & 2 others, Wilson, S. & O'Tierney-Ginn, P. F., Dec 12 2016, (Accepted/In press) In : Placenta.

Research output: Contribution to journalArticle

1 Scopus citations
2015

Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells

Grow, E. J., Flynn, R. A., Chavez, S., Bayless, N. L., Wossidlo, M., Wesche, D. J., Martin, L., Ware, C. B., Blish, C. A., Chang, H. Y., Pera, R. A. R. & Wysocka, J., Jun 11 2015, In : Nature. 522, 7555, p. 221-246 26 p.

Research output: Contribution to journalArticle

199 Scopus citations
14 Scopus citations

Prediction model for aneuploidy in early human embryo development revealed by single-cell analysis

Vera-Rodriguez, M., Chavez, S., Rubio, C., Reijo Pera, R. A. & Simon, C., Jul 7 2015, In : Nature Communications. 6, 7601.

Research output: Contribution to journalArticle

59 Scopus citations

Single-cell XIST expression in human preimplantation embryos and newly reprogrammed female induced pluripotent stem cells

Briggs, S. F., Dominguez, A. A., Chavez, S. & Reijo Pera, R. A., Jun 1 2015, In : Stem Cells. 33, 6, p. 1771-1781 11 p.

Research output: Contribution to journalArticle

16 Scopus citations
2014

Comparison of epigenetic mediator expression and function in mouse and human embryonic blastomeres

Chavez, S., McElroy, S. L., Bossert, N. L., De Jonge, C. J., Rodriguez, M. V., Leong, D. E., Behr, B., Westphal, L. M. & Reijo Pera, R. A., 2014, In : Human Molecular Genetics. 23, 18, p. 4970-4984 15 p., ddu212.

Research output: Contribution to journalArticle

25 Scopus citations

Preimplantation Embryo Development and Primordial Germ Cell Lineage Specification

Ramathal, C., Reijo Pera, R. A. & Chavez, S., Dec 23 2014, Knobil and Neill's Physiology of Reproduction: Two-Volume Set. Elsevier Inc., Vol. 1. p. 233-265 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2013

Generation of human induced pluripotent stem cells using epigenetic regulators reveals a germ cell-like identity in partially reprogrammed colonies

Goyal, A., Chavez, S. & Reijo Pera, R. A., Dec 12 2013, In : PLoS One. 8, 12, e82838.

Research output: Contribution to journalArticle

7 Scopus citations
2012

Dynamic blastomere behaviour reflects human embryo ploidy by the four-cell stage

Chavez, S., Loewke, K. E., Han, J., Moussavi, F., Colls, P., Munne, S., Behr, B. & Reijo Pera, R. A., 2012, In : Nature Communications. 3, 1251.

Research output: Contribution to journalArticle

162 Scopus citations
2011

An antibody against SSEA-5 glycan on human pluripotent stem cells enables removal of teratoma-forming cells

Tang, C., Lee, A. S., Volkmer, J. P., Sahoo, D., Nag, D., Mosley, A. R., Inlay, M. A., Ardehali, R., Chavez, S., Pera, R. R., Behr, B., Wu, J. C., Weissman, I. L. & Drukker, M., Sep 2011, In : Nature Biotechnology. 29, 9, p. 829-834 6 p.

Research output: Contribution to journalArticle

251 Scopus citations
2010

Parthenogenic blastocysts derived from cumulus-free In Vitro matured human oocytes

McElroy, S. L., Byrne, J. A., Chavez, S., Behr, B., Hsueh, A. J., Westphal, L. M. & Reijo Pera, R. A., 2010, In : PLoS One. 5, 6, e10979.

Research output: Contribution to journalArticle

22 Scopus citations
2009

Instructing an embryonic stem cell-derived oocyte fate: Lessons from endogenous oogenesis

Nicholas, C. R., Chavez, S., Baker, V. L. & Reijo Pera, R. A., May 2009, In : Endocrine Reviews. 30, 3, p. 264-283 20 p.

Research output: Contribution to journalArticle

39 Scopus citations

Isolation and characterization of pluripotent human spermatogonial stem cell-derived cells

Kossack, N., Meneses, J., Shefi, S., Ha, N. N., Chavez, S., Nicholas, C., Gromoll, J., Turek, P. J. & Reijo-Pera, R. A., Jan 2009, In : Stem Cells. 27, 1, p. 138-149 12 p.

Research output: Contribution to journalArticle

215 Scopus citations
2008

Characterization of six new human embryonic stem cell lines (HSF7, -8, -9, -10, -12, and -13) derived under minimal-animal component conditions

Chavez, S., Meneses, J. J., Nguyen, H. N., Kim, S. K. & Pera, R. A. R., Jun 1 2008, In : Stem Cells and Development. 17, 3, p. 535-546 12 p.

Research output: Contribution to journalArticle

30 Scopus citations
2007

Trophoblast-macrophage interactions: A regulatory network for the protection of pregnancy

Fest, S., Aldo, P. B., Abrahams, V. M., Visintin, I., Alvero, A., Chen, R., Chavez, S., Romero, R. & Mor, G., Jan 2007, In : American Journal of Reproductive Immunology. 57, 1, p. 55-66 12 p.

Research output: Contribution to journalArticle

145 Scopus citations