Sandra Rugonyi

Professor

  • 1087 Citations
  • 18 h-Index
20012019

Research output per year

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Research Output

  • 1087 Citations
  • 18 h-Index
  • 43 Article
  • 9 Conference contribution
  • 2 Chapter
  • 2 Review article
2019

Few-shot hypercolumn-based mitochondria segmentation in cardiac and outer hair cells in focused ion beam-scanning electron microscopy (FIB-SEM) data

Dietlmeier, J., McGuinness, K., Rugonyi, S., Wilson, T., Nuttall, A. & O'Connor, N. E., Dec 1 2019, In : Pattern Recognition Letters. 128, p. 521-528 8 p.

Research output: Contribution to journalArticle

2018

Animal models for heart valve research and development

Kheradvar, A., Zareian, R., Kawauchi, S., Goodwin, R. L. & Rugonyi, S., Jan 1 2018, (Accepted/In press) In : Drug Discovery Today: Disease Models.

Research output: Contribution to journalArticle

3 Scopus citations

Influence of blood flow on cardiac development

Courchaine, K., Rykiel, G. & Rugonyi, S., Sep 1 2018, In : Progress in Biophysics and Molecular Biology. 137, p. 95-110 16 p.

Research output: Contribution to journalReview article

3 Scopus citations

Intraluminal thrombus is associated with early rupture of abdominal aortic aneurysm

Haller, S. J., Crawford, J. D., Courchaine, K. M., Bohannan, C. J., Landry, G. J., Moneta, G. L., Azarbal, A. F. & Rugonyi, S., Apr 2018, In : Journal of vascular surgery. 67, 4, p. 1051-1058.e1

Research output: Contribution to journalArticle

23 Scopus citations

Light-sheet fluorescence microscopy for the study of the murine heart

Ding, Y., Bailey, Z., Messerschmidt, V., Nie, J., Bryant, R., Rugonyi, S., Fei, P., Lee, J. & Hsiai, T. K., Sep 15 2018, In : Journal of Visualized Experiments. 2018, 139, e57769.

Research output: Contribution to journalArticle

2 Scopus citations
1 Scopus citations
2017

Blood flow patterns underlie developmental heart defects

Midgett, M., Thornburg, K. & Rugonyi, S., Mar 13 2017, In : American Journal of Physiology - Heart and Circulatory Physiology. 312, 3, p. H632-H642

Research output: Contribution to journalArticle

20 Scopus citations
16 Scopus citations
5 Scopus citations
2016

4D subject-specific inverse modeling of the chick embryonic heart outflow tract hemodynamics

Goenezen, S., Chivukula, V. K., Midgett, M., Phan, L. & Rugonyi, S., Jun 1 2016, In : Biomechanics and Modeling in Mechanobiology. 15, 3, p. 723-743 21 p.

Research output: Contribution to journalArticle

11 Scopus citations

A chicken embryo cardiac outflow tract atlas for registering changes due to abnormal blood flow

Carson, J. P., Rennie, M. Y., Danilchik, M., Thornburg, K. & Rugonyi, S., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October. p. 1236-1239 4 p. 7590929

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A Geodesics-Based Surface Parameterization to Assess Aneurysm Progression

Phan, L., Courchaine, K., Azarbal, A., Vorp, D., Grimm, C. & Rugonyi, S., May 1 2016, In : Journal of Biomechanical Engineering. 138, 5, 054503.

Research output: Contribution to journalArticle

3 Scopus citations

Aortic outflow occlusion predicts rupture of abdominal aortic aneurysm

Crawford, J. D., Chivukula, V. K., Haller, S., Vatankhah, N., Bohannan, C. J., Moneta, G. L., Rugonyi, S. & Azarbal, A. F., Dec 1 2016, In : Journal of vascular surgery. 64, 6, p. 1623-1628 6 p.

Research output: Contribution to journalArticle

8 Scopus citations

Changes in dynamic embryonic heart wall motion in response to outflow tract banding measured using video densitometry

Stovall, S., Midgett, M., Thornburg, K. & Rugonyi, S., Nov 1 2016, In : Journal of Biomedical Optics. 21, 11, 116003.

Research output: Contribution to journalArticle

2 Scopus citations

Visualization of chicken embryo heart motion

Phan, L., Rugonyi, S. & Grimm, C., Sep 22 2016, (Accepted/In press) In : Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization. p. 1-15 15 p.

Research output: Contribution to journalArticle

2015

Analysis of 4D myocardial wall motion during early stages of chick heart development

Midgett, M. & Rugonyi, S., Jan 1 2015, In : Methods in Molecular Biology. 1299, p. 191-212 22 p.

Research output: Contribution to journalArticle

Blood flow through the embryonic heart outflow tract during cardiac looping in HH13-HH18 chicken embryos

Midgett, M., Chivukula, V. K., Dorn, C., Wallace, S. & Rugonyi, S., Oct 6 2015, In : Journal of the Royal Society Interface. 12, 111, 20150652.

Research output: Contribution to journalArticle

14 Scopus citations

Visualization techniques for the developing chicken heart

Phan, L., Grimm, C. & Rugonyi, S., 2015, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 9474. p. 35-44 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9474).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2014

3D imaging of the early embryonic chicken heart with focused ion beam scanning electron microscopy

Rennie, M. Y., Gahan, C. G., López, C. S., Thornburg, K. L. & Rugonyi, S., Aug 2014, In : Microscopy and Microanalysis. 20, 4, p. 1111-1119 9 p.

Research output: Contribution to journalArticle

4 Scopus citations

Blood flow dynamics reflect degree of outflow tract banding in Hamburger-Hamilton stage 18 chicken embryos

Midgett, M., Goenezen, S. & Rugonyi, S., Nov 6 2014, In : Journal of the Royal Society Interface. 11, 100, 0643.

Research output: Contribution to journalArticle

23 Scopus citations

Congenital heart malformations induced by hemodynamic altering surgical interventions

Midgett, M. & Rugonyi, S., Jan 1 2014, In : Frontiers in Physiology. 5 JUL, 00287.

Research output: Contribution to journalArticle

33 Scopus citations

Improving the efficiency of abdominal aortic aneurysm wall stress computations

Zelaya, J. E., Goenezen, S., Dargon, P. T., Azarbal, A. F. & Rugonyi, S., Jul 9 2014, In : PloS one. 9, 7, e101353.

Research output: Contribution to journalArticle

12 Scopus citations
2013
20 Scopus citations

Hemodynamic forces regulate collagen deposition in the embryonic chicken outflow tract

Rennie, M. Y., Danilchik, M., Thornburg, K. L. & Rugonyi, S., Dec 1 2013, ASME 2013 Summer Bioengineering Conference, SBC 2013. (ASME 2013 Summer Bioengineering Conference, SBC 2013; vol. 1 A).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hyperglycemia slows embryonic growth and suppresses cell cycle via cyclin D1 and p21

Scott-Drechsel, D. E., Rugonyi, S., Marks, D. L., Thornburg, K. L. & Hinds, M. T., Jan 1 2013, In : Diabetes. 62, 1, p. 234-242 9 p.

Research output: Contribution to journalArticle

27 Scopus citations
2012

Biomechanics of early cardiac development

Goenezen, S., Rennie, M. Y. & Rugonyi, S., Nov 1 2012, In : Biomechanics and Modeling in Mechanobiology. 11, 8, p. 1187-1204 18 p.

Research output: Contribution to journalArticle

35 Scopus citations

Biomechanics of the chick embryonic heart outflow tract at HH18 using 4D optical coherence tomography imaging and computational modeling

Liu, A., Yin, X., Shi, L., Li, P., Thornburg, K. L., Wang, R. & Rugonyi, S., Jul 23 2012, In : PloS one. 7, 7, e40869.

Research output: Contribution to journalArticle

44 Scopus citations
13 Scopus citations
14 Scopus citations
2011

Assessment of strain and strain rate in embryonic chick heart in vivo using tissue Doppler optical coherence tomography

Li, P., Liu, A., Shi, L., Yin, X., Rugonyi, S. & Wang, R. K., Nov 21 2011, In : Physics in Medicine and Biology. 56, 22, p. 7081-7092 12 p.

Research output: Contribution to journalArticle

29 Scopus citations

Changes in biomechanical environment of cardiac cells in chick embryos after cardiac outflow tract banding

Liu, A., Thornburg, K., Wang, R. & Rugonyi, S., Dec 1 2011, ASME 2011 Summer Bioengineering Conference, SBC 2011. PARTS A AND B ed. p. 363-364 2 p. (ASME 2011 Summer Bioengineering Conference, SBC 2011; no. PARTS A AND B).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Measurement of strain and strain rate in embryonic chick heart in vivo using spectral domain optical coherence tomography

Li, P., Yin, X., Shi, L., Liu, A., Rugonyi, S. & Wang, R. K., Aug 1 2011, In : IEEE Transactions on Biomedical Engineering. 58, 8, p. 2333-2338 6 p., 5766020.

Research output: Contribution to journalArticle

18 Scopus citations

Quantifying blood flow and wall shear stresses in the outflow tract of chick embryonic hearts

Liu, A., Nickerson, A., Troyer, A., Yin, X., Cary, R., Thornburg, K., Wang, R. & Rugonyi, S., Jun 1 2011, In : Computers and Structures. 89, 11-12, p. 855-867 13 p.

Research output: Contribution to journalArticle

32 Scopus citations

Refining shape correspondence for similar objects using strain

Phan, L., Knutsen, A. K., Bayly, P. V., Rugonyi, S. & Grimm, C., 2011, Eurographics Workshop on 3D Object Retrieval, 3DOR 2011 - co-event of Eurographics 2011. Eurographics Association, p. 17-24 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

The role of carrier number on the procoagulant activity of tissue factor in blood and plasma

Tormoen, G. W., Rugonyi, S., Gruber, A. & McCarty, O. J. T., Dec 1 2011, In : Physical Biology. 8, 6, 066005.

Research output: Contribution to journalArticle

14 Scopus citations
2010

Measurement of absolute blood flow velocity in outflow tract of HH18 chicken embryo based on 4D reconstruction using spectral domain optical coherence tomography

Ma, Z., Liu, A., Yin, X., Troyer, A., Thornburg, K., Wang, R. K. & Rugonyi, S., Oct 1 2010, In : Biomedical Optics Express. 1, 3, p. 798-811 14 p.

Research output: Contribution to journalArticle

58 Scopus citations

Modeling the effect of hemodynamics on cardiac growth during embryonic development

Rugonyi, S. & Thornburg, K., Jan 1 2010, Proceedings of the ASME 1st Global Congress on NanoEngineering for Medicine and Biology 2010, NEMB2010. ASME, p. 297-298 2 p. (Proceedings of the ASME 1st Global Congress on NanoEngineering for Medicine and Biology 2010, NEMB2010).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Rational design of an ex vivo model of thrombosis

Berny, M. A., Patel, I. A., White-Adams, T. C., Simonson, P., Gruber, A. S., Rugonyi, S. & McCarty, O. J. T., Jun 1 2010, In : Cellular and Molecular Bioengineering. 3, 2, p. 187-189 3 p.

Research output: Contribution to journalArticle

12 Scopus citations
2 Scopus citations

Wall motion influences flow pattern in the outflow tract of the chick embryonic heart tube

Liu, A., Wang, R., Thornburg, K. & Rugonyi, S., Dec 1 2010, ASME 2010 Summer Bioengineering Conference, SBC 2010. PARTS A AND B ed. p. 225-226 2 p. (ASME 2010 Summer Bioengineering Conference, SBC 2010; no. PARTS A AND B).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2009
15 Scopus citations
51 Scopus citations

Efficient synchronization and reconstruction of 4D non-gated cardiac images of chick embryos obtained from optical coherence tomography

Liu, A., Wang, R., L.Thornburg, K. & Rugonyi, S., Dec 1 2009, Proceedings of the ASME Summer Bioengineering Conference 2009, SBC2009. PART B ed. p. 1063-1064 2 p. (Proceedings of the ASME Summer Bioengineering Conference 2009, SBC2009; no. PART B).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Prevention of vascular graft occlusion and thrombus-associated thrombin generation by inhibition of factor XI

Tucker, E. I., Marzec, U. M., White, T. C., Hurst, S., Rugonyi, S., McCarty, O. J. T., Gailani, D., Gruber, A. & Hanson, S. R., Jan 22 2009, In : Blood. 113, 4, p. 936-944 9 p.

Research output: Contribution to journalArticle

124 Scopus citations
2008
67 Scopus citations
7 Scopus citations

Influence of liquid-layer thickness on pulmonary surfactant spreading and collapse

Siebert, T. A. & Rugonyi, S., Nov 15 2008, In : Biophysical Journal. 95, 10, p. 4549-4559 11 p.

Research output: Contribution to journalArticle

11 Scopus citations

The biophysical function of pulmonary surfactant

Rugonyi, S., Biswas, S. C. & Hall, S. B., Nov 30 2008, In : Respiratory Physiology and Neurobiology. 163, 1-3, p. 244-255 12 p.

Research output: Contribution to journalArticle

69 Scopus citations
2007

Finite element modeling of blood flow-induced mechanical forces in the outflow tract of chick embryonic hearts

Liu, A., Rugonyi, S., Pentecost, J. O. & Thornburg, K. L., Jun 1 2007, In : Computers and Structures. 85, 11-14, p. 727-738 12 p.

Research output: Contribution to journalArticle

23 Scopus citations

Surfactant spreading on a thin fluid film is sensitive to film thickness: Implications for in vivo pulmonary systems versus in vitro scenarios

Siebert, T. A. & Rugonyi, S., Dec 1 2007, Proceedings of the ASME Summer Bioengineering Conference 2007, SBC 2007. p. 281-282 2 p. (Proceedings of the ASME Summer Bioengineering Conference 2007, SBC 2007).

Research output: Chapter in Book/Report/Conference proceedingConference contribution