Reid Thompson

Assistant Professor

  • 1478 Citations
  • 19 h-Index
20022020

Research output per year

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Research Output

2020

In Regard to Wallner et al

Kang, J., Thompson, R. F., Fuller, C. D., Camphausen, K. A., Gabriel, P. E. & Thomas, C. R., Jan 1 2020, In : International Journal of Radiation Oncology Biology Physics. 106, 1, p. 217-218 2 p.

Research output: Contribution to journalLetter

Open Access
2019

Artificial Intelligence in Radiation Oncology

Deig, C. R., Kanwar, A. & Thompson, R., Jan 1 2019, (Accepted/In press) In : Hematology/Oncology Clinics of North America.

Research output: Contribution to journalReview article

Career enrichment opportunities at the scientific frontier in radiation oncology

Thompson, R. F., Fuller, C. D., Berman, A. T., Aneja, S. & Thomas, C. R., Jan 1 2019, In : JCO Clinical Cancer Informatics. 3

Research output: Contribution to journalEditorial

Quality of life of postoperative photon versus proton radiation therapy for oropharynx cancer

Sharma, S., Zhou, O., Thompson, R., Gabriel, P., Chalian, A., Rassekh, C., Weinstein, G. S., O'Malley, B. W., Aggarwal, C., Bauml, J., Cohen, R. B., Lukens, J. N., Swisher-McClure, S., Ghiam, A. F., Ahn, P. H. & Lin, A., Sep 1 2019, In : International Journal of Particle Therapy. 5, 2, p. 11-17 7 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

The Potential and Pitfalls of Crowdsourced Algorithm Development in Radiation Oncology

Elhalawani, H., Fuller, C. D. & Thompson, R., Jan 1 2019, In : JAMA Oncology.

Research output: Contribution to journalComment/debate

1 Scopus citations

Tumor Mutation Burden - From Doubts to Concerns

Wood, M. A., Nellore, A. & Thompson, R. F., Jan 1 2019, (Accepted/In press) In : JAMA Oncology.

Research output: Contribution to journalLetter

Using Artificial Intelligence to Improve the Quality and Safety of Radiation Therapy

Pillai, M., Adapa, K., Das, S. K., Mazur, L., Dooley, J., Marks, L. B., Thompson, R. & Chera, B. S., Jan 1 2019, In : Journal of the American College of Radiology.

Research output: Contribution to journalArticle

2 Scopus citations
2018

Artificial intelligence in radiation oncology: A specialty-wide disruptive transformation?

Thompson, R., Valdes, G., Fuller, C. D., Carpenter, C. M., Morin, O., Aneja, S., Lindsay, W. D., Aerts, H. J. W. L., Agrimson, B., Deville, C., Rosenthal, S. A., Yu, J. B. & Thomas, C., Jan 1 2018, (Accepted/In press) In : Radiotherapy and Oncology.

Research output: Contribution to journalArticle

23 Scopus citations

Artificial Intelligence in Radiation Oncology Imaging

Thompson, R., Valdes, G., Fuller, C. D., Carpenter, C. M., Morin, O., Aneja, S., Lindsay, W. D., Aerts, H. J. W. L., Agrimson, B., Deville, C., Rosenthal, S. A., Yu, J. B. & Thomas, C., Nov 15 2018, In : International Journal of Radiation Oncology Biology Physics. 102, 4, p. 1159-1161 3 p.

Research output: Contribution to journalEditorial

2 Scopus citations

Population-level distribution and putative immunogenicity of cancer neoepitopes

Wood, M. A., Paralkar, M., Paralkar, M. P., Nguyen, A., Struck, A. J., Ellrott, K., Margolin, A., Nellore, A. & Thompson, R., Apr 13 2018, In : BMC Cancer. 18, 1, 414.

Research output: Contribution to journalArticle

10 Scopus citations

Precision Oncology and Genomically Guided Radiation Therapy: A Report From the American Society for Radiation Oncology/American Association of Physicists in Medicine/National Cancer Institute Precision Medicine Conference

Hall, W. A., Bergom, C., Thompson, R., Baschnagel, A. M., Vijayakumar, S., Willers, H., Li, X. A., Schultz, C. J., Wilson, G. D., West, C. M. L., Capala, J., Coleman, C. N., Torres-Roca, J. F., Weidhaas, J. & Feng, F. Y., Jun 1 2018, In : International Journal of Radiation Oncology Biology Physics. 101, 2, p. 274-284 11 p.

Research output: Contribution to journalArticle

14 Scopus citations

Stereotactic body proton therapy for liver tumors: Dosimetric advantages and their radiobiological and clinical implications

Arscott, W. T., Thompson, R. F., Yin, L., Burgdorf, B., Kirk, M. & Ben-Josef, E., Oct 2018, In : Physics and Imaging in Radiation Oncology. 8, p. 17-22 6 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

The Future of Artificial Intelligence in Radiation Oncology

Thompson, R., Valdes, G., Fuller, C. D., Carpenter, C. M., Morin, O., Aneja, S., Lindsay, W. D., Aerts, H. J. W. L., Agrimson, B., Deville, C., Rosenthal, S. A., Yu, J. B. & Thomas, C., Oct 1 2018, In : International Journal of Radiation Oncology Biology Physics. 102, 2, p. 247-248 2 p.

Research output: Contribution to journalEditorial

1 Scopus citations
2015

A resident's perspective on global health rotations in radiation oncology

Thompson, R. F. & Grover, S., Dec 1 2015, In : International Journal of Radiation Oncology Biology Physics. 93, 5, p. 1165-1166 2 p.

Research output: Contribution to journalLetter

2 Scopus citations

Development and evaluation of a standardized method and atlas for contouring primary and permanent dentition

Fang, P., Batra, S., Hollander, A. B., Lin, A., Hill-Kayser, C. E., Levin, L. M., Mupparapu, M. & Thompson, R. F., Sep 1 2015, In : Dentomaxillofacial Radiology. 44, 7, 20150034.

Research output: Contribution to journalArticle

Pencil-beam scanning proton therapy for anal cancer: A dosimetric comparison with intensity-modulated radiotherapy

Ojerholm, E., Kirk, M. L., Thompson, R. F., Zhai, H., Metz, J. M., Both, S., Ben-Josef, E. & Plastaras, J. P., Sep 14 2015, In : Acta Oncologica. 54, 8, p. 1209-1217 9 p.

Research output: Contribution to journalArticle

16 Scopus citations
2014

A dosimetric comparison of proton and photon therapy in unresectable cancers of the head of pancreas

Thompson, R. F., Mayekar, S. U., Zhai, H., Both, S., Apisarnthanarax, S., Metz, J. M., Plastaras, J. P. & Ben-Josef, E., Aug 2014, In : Medical Physics. 41, 8, 081711.

Research output: Contribution to journalArticle

Open Access
24 Scopus citations

Radiotherapy and the tumor microenvironment: Mutual influence and clinical implications

Thompson, R. F. & Maity, A., 2014, Tumor Microenvironment and Cellular Stress: Signaling, Metabolism, Imaging, and Therapeutic Targets. Springer New York LLC, p. 147-165 19 p. (Advances in Experimental Medicine and Biology; vol. 772).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

20 Scopus citations
2013

Dose to the developing dentition during therapeutic irradiation: Organ at risk determination and clinical implications

Thompson, R. F., Schneider, R. A., Albertini, F., Lomax, A. J., Ares, C., Goitein, G. & Hug, E. B., May 1 2013, In : International Journal of Radiation Oncology Biology Physics. 86, 1, p. 108-113 6 p.

Research output: Contribution to journalArticle

5 Scopus citations
2012

Hypofractionated whole-breast radiation therapy: Does breast size matter?

Hannan, R., Thompson, R. F., Chen, Y., Bernstein, K., Kabarriti, R., Skinner, W., Chen, C. C., Landau, E., Miller, E., Spierer, M., Hong, L. & Kalnicki, S., Nov 15 2012, In : International Journal of Radiation Oncology Biology Physics. 84, 4, p. 894-901 8 p.

Research output: Contribution to journalArticle

22 Scopus citations

Maternal gametic transmission of translocations or inversions of human chromosome 11p15.5 results in regional DNA hypermethylation and downregulation of CDKN1C expression

Smith, A. C., Suzuki, M., Thompson, R., Choufani, S., Higgins, M. J., Chiu, I. W., Squire, J. A., Greally, J. M. & Weksberg, R., Jan 1 2012, In : Genomics. 99, 1, p. 25-35 11 p.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations
2011

DNA methylation changes in murine breast adenocarcinomas allow the identification of candidate genes for human breast carcinogenesis

Acosta, D., Suzuki, M., Connolly, D., Thompson, R. F., Fazzari, M. J., Greally, J. M. & Montagna, C., Apr 1 2011, In : Mammalian Genome. 22, 3-4, p. 249-259 11 p.

Research output: Contribution to journalArticle

12 Scopus citations

Late-replicating heterochromatin is characterized by decreased cytosine methylation in the human genome

Suzuki, M., Oda, M., Ramos, M. P., Pascual, M., Lau, K., Stasiek, E., Agyiri, F., Thompson, R. F., Glass, J. L., Jing, Q., Sandstrom, R., Fazzari, M. J., Hansen, R. S., Stamatoyannopoulos, J. A., McLellan, A. S. & Greally, J. M., Nov 1 2011, In : Genome Research. 21, 11, p. 1833-1840 8 p.

Research output: Contribution to journalArticle

Open Access
24 Scopus citations

Widespread hypomethylation occurs early and synergizes with gene amplification during esophageal carcinogenesis

Alvarez, H., Opalinska, J., Zhou, L., Sohal, D., Fazzari, M. J., Yu, Y., Montagna, C., Montgomery, E. A., Canto, M., Dunbar, K. B., Wang, J., Roa, J. C., Mo, Y., Bhagat, T., Ramesh, K. H., Cannizzaro, L., Mollenhauer, J., Thompson, R. F., Suzuki, M., Meltzer, S. & 4 others, Melnick, A., Greally, J. M., Maitra, A. & Verma, A., Mar 1 2011, In : PLoS genetics. 7, 3, e1001356.

Research output: Contribution to journalArticle

Open Access
83 Scopus citations
2010

Cytosine methylation dysregulation in neonates following intrauterine growth restriction

Einstein, F., Thompson, R. F., Bhagat, T. D., Fazzari, M. J., Verma, A., Barzilai, N. & Greally, J. M., Jan 26 2010, In : PloS one. 5, 1, e8887.

Research output: Contribution to journalArticle

Open Access
101 Scopus citations

Epigenetic basis for fetal origins of age-related disease

Thompson, R. F. & Einstein, F. H., Mar 1 2010, In : Journal of Women's Health. 19, 3, p. 581-587 7 p.

Research output: Contribution to journalReview article

32 Scopus citations

Experimental approaches to the study of epigenomic dysregulation in ageing

Thompson, R. F., Fazzari, M. J. & Greally, J. M., Apr 1 2010, In : Experimental Gerontology. 45, 4, p. 255-268 14 p.

Research output: Contribution to journalShort survey

15 Scopus citations

Experimental intrauterine growth restriction induces alterations in DNA methylation and gene expression in pancreatic islets of rats

Thompson, R. F., Fazzari, M. J., Niu, H., Barzilai, N., Simmons, R. A. & Greally, J. M., May 14 2010, In : Journal of Biological Chemistry. 285, 20, p. 15111-15118 8 p.

Research output: Contribution to journalArticle

Open Access
115 Scopus citations

Tissue-specific dysregulation of DNA methylation in aging

Thompson, R. F., Atzmon, G., Gheorghe, C., Liang, H. Q., Lowes, C., Greally, J. M. & Barzilai, N., Aug 1 2010, In : Aging Cell. 9, 4, p. 506-518 13 p.

Research output: Contribution to journalArticle

Open Access
144 Scopus citations
2009

A pipeline for the quantitative analysis of CG dinucleotide methylation using mass spectrometry

Thompson, R. F., Suzuki, M., Lau, K. W. & Greally, J. M., Sep 14 2009, In : Bioinformatics. 25, 17, p. 2164-2170 7 p.

Research output: Contribution to journalArticle

Open Access
62 Scopus citations

High-resolution genome-wide cytosine methylation profiling with simultaneous copy number analysis and optimization for limited cell numbers

Oda, M., Glass, J. L., Thompson, R. F., Mo, Y., Olivier, E. N., Figueroa, M. E., Selzer, R. R., Richmond, T. A., Zhang, X., Dannenberg, L., Green, R. D., Melnick, A., Hatchwell, E., Bouhassira, E. E., Verma, A., Suzuki, M. & Greally, J. M., Jul 30 2009, In : Nucleic acids research. 37, 12, p. 3829-3839 11 p.

Research output: Contribution to journalArticle

Open Access
109 Scopus citations
2008

An analytical pipeline for genomic representations used for cytosine methylation studies

Thompson, R. F., Reimers, M., Khulan, B., Gissot, M., Richmond, T. A., Chen, Q., Zheng, X., Kim, K. & Greally, J. M., May 1 2008, In : Bioinformatics. 24, 9, p. 1161-1167 7 p.

Research output: Contribution to journalArticle

Open Access
43 Scopus citations

An integrative genomic and epigenomic approach for the study of transcriptional regulation

Figueroa, M. E., Reimers, M., Thompson, R. F., Ye, K., Li, Y., Selzer, R. R., Fridriksson, J., Paietta, E., Wiernik, P., Green, R. D., Greally, J. M. & Melnick, A., Mar 26 2008, In : PloS one. 3, 3, e1882.

Research output: Contribution to journalArticle

Open Access
74 Scopus citations

Enhanced activation of a "nutrient-sensing" pathway with age contributes to insulin resistance

Einstein, F. H., Fishman, S., Bauman, J., Thompson, R. F., Huffman, D. M., Atzmon, G., Barzilai, N. & Muzumdar, R. H., Oct 1 2008, In : FASEB Journal. 22, 10, p. 3450-3457 8 p.

Research output: Contribution to journalArticle

33 Scopus citations

Toxoplasma gondii and Cryptosporidium parvum lack detectable DNA cytosine methylation

Gissot, M., Choi, S. W., Thompson, R. F., Greally, J. M. & Kim, K., Mar 1 2008, In : Eukaryotic Cell. 7, 3, p. 537-540 4 p.

Research output: Contribution to journalArticle

Open Access
36 Scopus citations
2007

CG dinucleotide clustering is a species-specific property of the genome

Glass, J. L., Thompson, R. F., Khulan, B., Figueroa, M. E., Olivier, E. N., Oakley, E. J., Van Zant, G., Bouhassira, E. E., Melnick, A., Golden, A., Fazzari, M. J. & Greally, J. M., Nov 1 2007, In : Nucleic acids research. 35, 20, p. 6798-6807 10 p.

Research output: Contribution to journalArticle

Open Access
66 Scopus citations
2006

Comparative isoschizomer profiling of cytosine methylation: The HELP assay

Khulan, B., Thompson, R. F., Ye, K., Fazzari, M. J., Suzuki, M., Stasiek, E., Figueroa, M. E., Glass, J. L., Chen, Q., Montagna, C., Hatchwell, E., Selzer, R. R., Richmond, T. A., Green, R. D., Melnick, A. & Greally, J. M., Aug 8 2006, In : Genome Research. 16, 8, p. 1046-1055 10 p.

Research output: Contribution to journalArticle

Open Access
309 Scopus citations
2002

Ca2+ effects on myosin-II-mediated contraction of pseudo-contractile rings and transport of vesicles in extracts of clam oocytes

Wöllert, T., DePina, A. S., Thompson, R. F. & Langford, G. M., Oct 2002, In : Biological Bulletin. 203, 2, p. 206-208 3 p.

Research output: Contribution to journalArticle

GTPase Rho is involved in myosin-II-mediated contraction of pseudo-contractile rings and transport of vesicles in extracts of clam oocytes

Wöllert, T., DePina, A. S., Thompson, R. F. & Langford, G. M., Oct 2002, In : Biological Bulletin. 203, 2, p. 208-210 3 p.

Research output: Contribution to journalArticle

2 Scopus citations

Myosin superfamily evolutionary history

Thompson, R. F. & Langford, G. M., Nov 1 2002, In : Anatomical Record. 268, 3, p. 276-289 14 p.

Research output: Contribution to journalArticle

60 Scopus citations