Mehmet Gonen

Research Assistant Professor

  • 1319 Citations
  • 13 h-Index
20082017

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  • 2 Similar Profiles
Learning algorithms Engineering & Materials Science
kernel Mathematics
Experiments Engineering & Materials Science
Supervised learning Engineering & Materials Science
Pharmaceutical Preparations Medicine & Life Sciences
Learning Medicine & Life Sciences
Factorization Engineering & Materials Science
Cells Engineering & Materials Science

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Research Output 2008 2017

  • 1319 Citations
  • 13 h-Index
  • 23 Article
  • 16 Conference contribution
  • 1 Review article

A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines

Gönen, M. , Weir, B. A. , Cowley, G. S. , Vazquez, F. , Guan, Y. , Jaiswal, A. , Karasuyama, M. , Uzunangelov, V. , Wang, T. , Tsherniak, A. , Howell, S. , Marbach, D. , Hoff, B. , Norman, T. C. , Airola, A. , Bivol, A. , Bunte, K. , Carlin, D. , Chopra, S. , Deran, A. & 25 others Ellrott, K., Gopalacharyulu, P., Graim, K., Kaski, S., Khan, S. A., Newton, Y., Ng, S., Pahikkala, T., Paull, E., Sokolov, A., Tang, H., Tang, J., Wennerberg, K., Xie, Y., Zhan, X., Zhu, F., Aittokallio, T., Mamitsuka, H., Stuart, J. M., Boehm, J. S., Root, D. E., Xiao, G., Stolovitzky, G., Hahn, W. C. & Margolin, A. A. 2017 (Accepted/In press) In : Cell Systems.

Research output: Research - peer-reviewArticle

Cell Line
Genes
Neoplasms
Benchmarking
Datasets

Cytokine response in crimean-congo hemorrhagic fever virus infection

Ergönül, Ö., Şeref, C., Eren, Ş., Çelikbaş, A., Baykam, N., Dokuzoğuz, B., Gönen, M. & Can, F. Oct 1 2017 In : Journal of Medical Virology. 89, 10, p. 1707-1713 7 p.

Research output: Research - peer-reviewArticle

Crimean-Congo hemorrhagic fever virus
Virus Diseases
Interleukin-8
Interleukin-6
Cytokines
1 Citations

Modeling gene-wise dependencies improves the identification of drug response biomarkers in cancer studies

Nikolova, O., Moser, R., Kemp, C., Gönen, M. & Margolin, A. A. May 1 2017 In : Bioinformatics. 33, 9, p. 1362-1369 8 p.

Research output: Research - peer-reviewArticle

Biomarkers
Cancer
Drugs
Gene
Modeling

AUC Maximization in Bayesian hierarchical models

Gönen, M. 2016 Frontiers in Artificial Intelligence and Applications. IOS Press, Vol. 285, p. 21-27 7 p. (Frontiers in Artificial Intelligence and Applications; vol. 285)

Research output: ResearchConference contribution

Information retrieval
Classifiers
Experiments
2 Citations

DREAMTools: A Python package for scoring collaborative challenges

Cokelaer, T. , Bansal, M. , Bare, C. , Bilal, E. , Bot, B. M. , Chaibub Neto, E. , Eduati, F. , de la Fuente, A. , Gönen, M. , Hill, S. M. , Hoff, B. , Karr, J. R. , Küffner, R. , Menden, M. P. , Meyer, P. , Norel, R. , Pratap, A. , Prill, R. J. , Weirauch, M. T. , Costello, J. C. & 2 others Stolovitzky, G. & Saez-Rodriguez, J. 2016 In : F1000Research. 4, 1030

Research output: Research - peer-reviewArticle

Computational methods
Boidae
Metadata
Medicine
Learning systems