• 67731 Citations
  • 113 h-Index
1971 …2020

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Article

Quantification of the DNA content of structurally abnormal X chromosomes and X chromosome aneuploidy using high resolution bivariate flow karyotyping

Trask, B., van den Engh, G., Nussbaum, R., Schwartz, C. & Gray, J., 1990, In : Cytometry. 11, 1, p. 184-195 12 p.

Research output: Contribution to journalArticle

31 Scopus citations

Quantitating morphological changes in biological samples during scanning electron microscopy sample preparation with correlative super-resolution microscopy

Zhang, Y., Huang, T., Jorgens, D. M., Nickerson, A., Lin, L. J., Pelz, J., Gray, J. W., López, C. S. & Nan, X., May 2017, In : PloS one. 12, 5, e0176839.

Research output: Contribution to journalArticle

17 Scopus citations

Quantitative, in situ analysis of mRNAs and proteins with subcellular resolution

Kwon, S., Chin, K-Y., Nederlof, M. & Gray, J., Dec 1 2017, In : Scientific Reports. 7, 1, 16459.

Research output: Contribution to journalArticle

2 Scopus citations

Quantitative analysis of chromosomal CGH in human breast tumors associates copy number abnormalities with p53 status and patient survival

Jain, A. N., Chin, K., Børresen-Dale, A. L., Erikstein, B. K., Lonning, P. E., Kaaresen, R. & Gray, J. W., 2001, In : Proceedings of the National Academy of Sciences of the United States of America. 98, 14, p. 7952-7957 6 p.

Research output: Contribution to journalArticle

78 Scopus citations

Quantitative Analysis of the Cytokinetic Response of kht Tumors in Vivo to 1-β-D-Arabinofuranosylcytosine

Pallavicini, M. G., Gray, J. W. & Folstad, L. J., Aug 1 1982, In : Cancer Research. 42, 8, p. 3125-3131 7 p.

Research output: Contribution to journalArticle

19 Scopus citations

Quantitative cytokinetics: Cellular response to cell cycle specific agents

Gray, J. W., 1983, In : Pharmacology and Therapeutics. 22, 2, p. 163-197 35 p.

Research output: Contribution to journalArticle

20 Scopus citations

Quantitative DNA fiber mapping

Weler, H. U. G., Wang, L., Mullikin, J. C., Zhu, Y., Cheng, J. F., Greulich, K. M., Bensimon, A. & Gray, J. W., Oct 1995, In : Human molecular genetics. 4, 10, p. 1903-1910 8 p.

Research output: Contribution to journalArticle

92 Scopus citations

Quantitative karyotyping of human chromosomes by dual beam flow cytometry

Langlois, R. G., Yu, L. C., Gray, J. W. & Carrano, A. V., 1982, In : Proceedings of the National Academy of Sciences of the United States of America. 79, 24 I, p. 7876-7880 5 p.

Research output: Contribution to journalArticle

Open Access
92 Scopus citations

Quantitative mapping of amplicon structure by array CGH identifies CYP24 as a candidate oncogene

Albertson, D. G., Ylstra, B., Segraves, R., Collins, C., Dairkee, S. H., Kowbel, D., Kuo, W. L., Gray, J. W. & Pinkel, D., Jun 1 2000, In : Nature genetics. 25, 2, p. 144-146 3 p.

Research output: Contribution to journalArticle

493 Scopus citations

Quantitative mRNA expression analysis from formalin-fixed, paraffin-embedded tissues using 5′ nuclease quantitative reverse transcription-polymerase chain reaction

Godfrey, T. E., Kim, S. H., Chavira, M., Ruff, D. W., Warren, R. S., Gray, J. W. & Jensen, R. H., May 2000, In : Journal of Molecular Diagnostics. 2, 2, p. 84-91 8 p.

Research output: Contribution to journalArticle

254 Scopus citations

Quantitative Multiplex Immunohistochemistry Reveals Myeloid-Inflamed Tumor-Immune Complexity Associated with Poor Prognosis

Tsujikawa, T., Kumar, S., Borkar, R. N., Azimi, V., Thibault, G., Chang, Y. H., Balter, A., Kawashima, R., Choe, G., Sauer, D., El Rassi, E., Clayburgh, D., Kulesz-Martin, M., Lutz, E. R., Zheng, L., Jaffee, E. M., Leyshock, P., Margolin, A., Mori, M. T., Gray, J. & 2 others, Flint, P. & Coussens, L., Apr 4 2017, In : Cell Reports. 19, 1, p. 203-217 15 p.

Research output: Contribution to journalArticle

128 Scopus citations

Quantum dots-based reverse phase protein microarray

Shingyoji, M., Gerion, D., Pinkel, D., Gray, J. W. & Chen, F., Sep 15 2005, In : Talanta. 67, 3, p. 472-478 7 p.

Research output: Contribution to journalArticle

55 Scopus citations

Rab25 increases cellular ATP and glycogen stores protecting cancer cells from bioenergetic stress

Cheng, K. W., Agarwal, R., Mitra, S., Lee, J. S., Carey, M., Gray, J. W. & Mills, G. B., Feb 1 2012, In : EMBO Molecular Medicine. 4, 2, p. 125-141 17 p.

Research output: Contribution to journalArticle

48 Scopus citations

Radiation-induced chromosome aberrations analysed by fluorescence in situ hybridization with a triple combination of composite whole chromosome-specific DNA probes

Schmid, E., Zitzelsberger, H., Braselmann, H., Gray, J. W. & Bauchinger, M., Jan 1 1992, In : International Journal of Radiation Biology. 62, 6, p. 673-678 6 p.

Research output: Contribution to journalArticle

131 Scopus citations

Radiosensitivity profiles from a panel of ovarian cancer cell lines exhibiting genetic alterations in p53 and disparate DNA-dependent protein kinase activities

Langland, G. T., Yannone, S. M., Langland, R. A., Nakao, A., Guan, Y., Long, S. B. T., Vonguyen, L., Chen, D. J., Gray, J. W. & Chen, F., Apr 1 2010, In : Oncology Reports. 23, 4, p. 1021-1026 6 p.

Research output: Contribution to journalArticle

13 Scopus citations

Rapid cell cycle analysis. II. Phase durations and dispersions from computer analysis of RC curves.

Gray, J. W., Bogart, E., Gavel, D. T., George, Y. S. & Moore, D. H., Sep 1983, In : Cell and Tissue Kinetics. 16, 5, p. 457-471 15 p.

Research output: Contribution to journalArticle

10 Scopus citations

RAPID CELL CYCLE ANALYSIS BY MEASUREMENT OF THE RADIOACTIVITY PER CELL IN A NARROW WINDOW IN S PHASE (RCSi)

Gray, J., Carver, J. H., George, Y. S. & Mendelsohn, M. L., 1977, In : Cell Proliferation. 10, 2, p. 97-109 13 p.

Research output: Contribution to journalArticle

33 Scopus citations

Rapid human chromosome aberration analysis using fluorescence in situ hybridization

Lucas, J. N., Tenjin, T., Straume, T., Pinkel, D., Moore, D., Litt, M. & Gray, J. W., Jan 1 1989, In : International Journal of Radiation Biology. 56, 1, p. 35-44 10 p.

Research output: Contribution to journalArticle

174 Scopus citations

Rapid isolation of metaphase chromosomes after stabilization by a psoralen

Aten, J. A., Yu, L., Lucas, J. N. & Gray, J. W., Jan 1 1980, In : Basic and Applied Histochemistry. 24, 4, 1 p.

Research output: Contribution to journalArticle

1 Scopus citations

Rapid translocation frequency analysis in humans decades after exposure to ionizing radiation

Lucas, J. N., Awa, A., Straume, T., Poggensee, M., Kodama, Y., Nakano, M., Ohtaki, K., Weier, H. U., Pinkel, D., Gray, J. & Littlefield, G., Jan 1 1992, In : International Journal of Radiation Biology. 62, 1, p. 53-63 11 p.

Research output: Contribution to journalArticle

426 Scopus citations

Ras-GTP dimers activate the Mitogen-Activated Protein Kinase (MAPK) pathway

Nan, X., Tamgüney, T. M., Collisson, E. A., Lin, L. J., Pitt, C., Galeas, J., Lewis, S., Gray, J. W., McCormick, F. & Chu, S., Jun 30 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 26, p. 7996-8001 6 p.

Research output: Contribution to journalArticle

122 Scopus citations

Rates of incorporation of radioactive molecules during the cell cycle

Gray, J. W., Pallavicini, M. G., George, Y. S., Groppi, V., Look, M. & Dean, P. N., Aug 1981, In : Journal of Cellular Physiology. 108, 2, p. 135-144 10 p.

Research output: Contribution to journalArticle

21 Scopus citations

Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges

Lovci, M. T., Ghanem, D., Marr, H., Arnold, J., Gee, S., Parra, M., Liang, T. Y., Stark, T. J., Gehman, L. T., Hoon, S., Massirer, K. B., Pratt, G. A., Black, D. L., Gray, J. W., Conboy, J. G. & Yeo, G. W., Dec 1 2013, In : Nature Structural and Molecular Biology. 20, 12, p. 1434-1442 9 p.

Research output: Contribution to journalArticle

134 Scopus citations

Reconciliation of classification systems defining molecular subtypes of colorectal cancer: Interrelationships and clinical implications

Sadanandam, A., Wang, X., De Sousa E Melo, F., Gray, J. W., Vermeulen, L., Hanahan, D. & Medema, J. P., Feb 1 2014, In : Cell Cycle. 13, 3, p. 353-357 5 p.

Research output: Contribution to journalArticle

51 Scopus citations

Reconstruction of functionally normal and malignant human breast tissues in mice

Kuperwasser, C., Chavarria, T., Wu, M., Magrane, G., Gray, J. W., Carey, L., Richardson, A. & Weinberg, R. A., Apr 6 2004, In : Proceedings of the National Academy of Sciences of the United States of America. 101, 14, p. 4966-4971 6 p.

Research output: Contribution to journalArticle

591 Scopus citations

Reconstruction of Gene Regulatory Networks Based on Repairing Sparse Low-Rank Matrices

Chang, Y. H., Dobbe, R., Bhushan, P., Gray, J. & Tomlin, C. J., Jul 1 2016, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 13, 4, p. 767-777 11 p., 7182286.

Research output: Contribution to journalArticle

Relationship of c‐myc gene copy number and gene expression: Cellular effects of elevated c‐myc protein

Pallavicini, M. G., Rosette, C., Reitsma, M., Deteresa, P. S. & Gray, J. W., May 1990, In : Journal of Cellular Physiology. 143, 2, p. 372-380 9 p.

Research output: Contribution to journalArticle

15 Scopus citations

Replication kinetics of Chinese hamster chromosomes as revealed by bivariate flow karyotyping

Cremer, C. & Gray, J. W., Jan 1983, In : Cytometry. 3, 4, p. 282-286 5 p.

Research output: Contribution to journalArticle

4 Scopus citations

Response to neoadjuvant therapy for breast cancer by magnetic resonance imaging type, estrogen receptor status, grade, and comparative genomic hybridization

Esserman, L. J., Sudilovsky, D., Kuo, W. I., Gray, J. & Hylton, N., Dec 1 2001, In : Breast Cancer Research and Treatment. 69, 3, 1 p.

Research output: Contribution to journalArticle

1 Scopus citations

Restoration of Profiles from Slit-Scan Flow Cytometry

Norgren, R. M., Gray, J. W. & Young, I. T., Feb 1982, In : IEEE Transactions on Biomedical Engineering. BME-29, 2, p. 101-106 6 p.

Research output: Contribution to journalArticle

6 Scopus citations

RESTORE: Robust intEnSiTy nORmalization mEthod for multiplexed imaging

Chang, Y. H., Chin, K., Thibault, G., Eng, J., Burlingame, E. & Gray, J. W., Dec 1 2020, In : Communications Biology. 3, 1, 111.

Research output: Contribution to journalArticle

Open Access

Restriction of receptor movement alters cellular response: Physical force sensing by EphA2

Salaita, K., Nair, P. M., Petit, R. S., Neve, R. M., Das, D., Gray, J. W. & Groves, J. T., Mar 12 2010, In : Science. 327, 5971, p. 1380-1385 6 p.

Research output: Contribution to journalArticle

239 Scopus citations

Risk estimation of distant metastasis in node-negative, estrogen receptor-positive breast cancer patients using an RT-PCR based prognostic expression signature

Tutt, A., Wang, A., Rowland, C., Gillett, C., Lau, K., Chew, K., Dai, H., Kwok, S., Ryder, K., Shu, H., Springall, R., Cane, P., McCallie, B., Kam-Morgan, L., Anderson, S., Buerger, H., Gray, J., Bennington, J., Esserman, L., Hastie, T. & 4 others, Broder, S., Sninsky, J., Brandt, B. & Waldman, F., Nov 21 2008, In : BMC cancer. 8, 339.

Research output: Contribution to journalArticle

44 Scopus citations

Robust Cell Detection and Segmentation for Image Cytometry Reveal Th17 Cell Heterogeneity

Tsujikawa, T., Thibault, G., Azimi, V., Sivagnanam, S., Banik, G., Means, C., Kawashima, R., Clayburgh, D. R., Gray, J. W., Coussens, L. M. & Chang, Y. H., Apr 2019, In : Cytometry Part A. 95, 4, p. 389-398 10 p.

Research output: Contribution to journalArticle

2 Scopus citations

Segmentation of confocal microscope images of cell nuclei in thick tissue sections

Ortiz De Solórzano, C., García Rodriguez, E., Jones, A., Pinkel, D., Gray, J. W., Sudar, D. & Lockett, S. J., Apr 6 1999, In : Journal of Microscopy. 193, 3, p. 212-226 15 p.

Research output: Contribution to journalArticle

124 Scopus citations

Semiautomated DNA probe mapping using digital imaging microscopy: I. System development

Mascio, L. N., Verbeek, P. W., Sudar, D., Kuo, WL. L. & Gray, J. W., Jan 1 1995, In : Cytometry. 19, 1, p. 51-59 9 p.

Research output: Contribution to journalArticle

9 Scopus citations

Semiautomated DNA probe mapping using digital imaging microscopy: II. System performance

Sakamoto, M., Pinkel, D., Mascio, L., Sudar, D., Peters, D., Kuo, WL. L., Yamakawa, K., Nakamura, Y., Drabkin, H., Jericevic, Z., Smith, L. & Gray, J. W., Jan 1 1995, In : Cytometry. 19, 1, p. 60-69 10 p.

Research output: Contribution to journalArticle

20 Scopus citations

Separation and analysis of human chromosomes by combined velocity sedimentation and flow sorting applying single‐ and dual‐laser flow cytometry

Collard, J. G., Philippus, E., Tulp, A., Lebo, R. V. & Gray, J. W., Jan 1984, In : Cytometry. 5, 1, p. 9-19 11 p.

Research output: Contribution to journalArticle

21 Scopus citations

Simultaneous Multicolor Single-Molecule Tracking with Single-Laser Excitation via Spectral Imaging

Huang, T., Phelps, C., Wang, J., Lin, L. J., Bittel, A., Scott, Z., Jacques, S., Gibbs, S., Gray, J. & Nan, X., Jan 23 2018, In : Biophysical Journal. 114, 2, p. 301-310 10 p.

Research output: Contribution to journalArticle

16 Scopus citations

Single-molecule superresolution imaging allows quantitative analysis of RAF multimer formation and signaling

Nan, X., Collisson, E. A., Lewis, S., Huang, J., Tamgüney, T. M., Liphardt, J. T., McCormick, F., Gray, J. W. & Chu, S., Nov 12 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 46, p. 18519-18524 6 p.

Research output: Contribution to journalArticle

91 Scopus citations

Slit-scan cytometry of mammalian chromosomes

Gray, J. W., Peters, D. & Merrill, J. T., Jan 1 1979, In : Journal of Histochemistry and Cytochemistry. 27, 1, p. 441-444 4 p.

Research output: Contribution to journalArticle

Open Access
39 Scopus citations

Slit-scan flow cytometry: analysis of Chinese hamster M3-1 chromosomes

Gray, J. W., Lucas, J. & Pinkel, D., Jan 1 1981, In : Acta Pathologica et Microbiologica Scandinavica - Section A Pathology. 89, Suppl.274, p. 249-255 7 p.

Research output: Contribution to journalArticle

3 Scopus citations

Solid tumor response to two doses of Ara-C: Cell survival prediction based on single dose cytokinetic data

Pallavicini, M. G., Folstad, L. J. & Gray, J. W., Jan 1 1982, In : Cell and Tissue Kinetics. 15, 1, p. 109-110 2 p.

Research output: Contribution to journalArticle

Sparse combinatorial inference with an application in cancer biology

Mukherjee, S., Pelech, S., Neve, R. M., Kuo, W. L., Ziyad, S., Spellman, P. T., Gray, J. W. & Speed, T. P., Jan 1 2009, In : Bioinformatics. 25, 2, p. 265-271 7 p.

Research output: Contribution to journalArticle

16 Scopus citations

Sparse multitask regression for identifying common mechanism of response to therapeutic targets

Zhang, K., Gray, J. W. & Parvin, B., Jun 1 2010, In : Bioinformatics. 26, 12, p. i97-i105 btq181.

Research output: Contribution to journalArticle

21 Scopus citations

Stabilization of chromosomes by DNA intercalators for flow karyotyping and identification by banding of isolated chromosomes

Aten, J. A., Buys, C. H. C. M., van der Veen, A. Y., Mesa, J. R., Yu, L. C., Gray, J. W., Osinga, J. & Stap, J., Jul 1 1987, In : Histochemistry. 87, 4, p. 359-366 8 p.

Research output: Contribution to journalArticle

12 Scopus citations

Statement on Use of DNA Testing for Presymptomatic Identification of Cancer Risk

Collins, F. S., Benjamin, L. J., Botstein, D., Cox, J. R., Davidson, N., Gray, J. W., Housman, D. E., Holtzman, N., Jamison, K. R., Rothstein, R., Smith, D. C., Smith, L. M., Spence, M. A. & Tilghman, S. M., Mar 9 1994, In : JAMA: The Journal of the American Medical Association. 271, 10, 1 p.

Research output: Contribution to journalArticle

131 Scopus citations

Stromal-epithelial interactions in the progression of ovarian cancer: Influence and source of tumor stromal cells

Parrott, J. A., Nilsson, E., Mosher, R., Magrane, G., Albertson, D., Pinkel, D., Gray, J. W. & Skinner, M. K., Apr 25 2001, In : Molecular and Cellular Endocrinology. 175, 1-2, p. 29-39 11 p.

Research output: Contribution to journalArticle

53 Scopus citations

Structural Chromosome Analysis by Whole Chromosome Painting for Assessment of Radiation-Induced Genetic Damage

Gray, J. W., Pinkel, D., Lucas, J. N. & Awa, A., Jan 1 1992, In : Journal of radiation research. 33, p. 80-86 7 p.

Research output: Contribution to journalArticle

Open Access
23 Scopus citations