• 67302 Citations
  • 113 h-Index
1971 …2020

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20q gain associates with immortalization: 20q13.2 amplification correlates with genome instability in human papillomavirus 16 E7 transformed human uroepithelial cells

Savelieva, E., Belair, C. D., Newton, M. A., DeVries, S., Gray, J. W., Waldman, F. & Reznikoff, C. A., Jan 1 1997, In : Oncogene. 14, 5, p. 551-560 10 p.

Research output: Contribution to journalArticle

Open Access
118 Scopus citations

A 20q13.2 cancer amplicon: Novel sequence analysis tools

Volik, S., Gray, J., Kowbel, D. & Collins, C., 2001, In : Nature Genetics. 27, 4S, p. 94 1 p.

Research output: Contribution to journalArticle

A Biobank of Breast Cancer Explants with Preserved Intra-tumor Heterogeneity to Screen Anticancer Compounds

Bruna, A., Rueda, O. M., Greenwood, W., Batra, A. S., Callari, M., Batra, R. N., Pogrebniak, K., Sandoval, J., Cassidy, J. W., Tufegdzic-Vidakovic, A., Sammut, S. J., Jones, L., Provenzano, E., Baird, R., Eirew, P., Hadfield, J., Eldridge, M., McLaren-Douglas, A., Barthorpe, A., Lightfoot, H. & 10 others, O'Connor, M. J., Gray, J., Cortes, J., Baselga, J., Marangoni, E., Welm, A. L., Aparicio, S., Serra, V., Garnett, M. J. & Caldas, C., Sep 22 2016, In : Cell. 167, 1, p. 260-274.e22

Research output: Contribution to journalArticle

147 Scopus citations

A bremsstrahlung method for locating electrical breakdown in a Van De Graaff accelerator tube

Gray, J. W., Hartnell, G. W. & Legg, J. C., Sep 15 1971, In : Nuclear Instruments and Methods. 96, 1, p. 217-218 2 p.

Research output: Contribution to journalArticle

3 Scopus citations

Absence of telomerase and shortened telomeres have minimal effects on skin and pancreatic carcinogenesis elicited by viral oncogenes

Argilla, D., Chin, K., Singh, M., Hodgson, J. G., Bosenberg, M., De Solórzano, C. O., Lockett, S., DePinho, R. A., Gray, J. & Hanahan, D., Oct 1 2004, In : Cancer Cell. 6, 4, p. 373-385 13 p.

Research output: Contribution to journalArticle

18 Scopus citations

A Central role for RAF→MEK→ERK signaling in the genesis of pancreatic ductal adenocarcinoma

Collisson, E. A., Trejo, C. L., Silva, J. M., Gu, S., Korkola, J. E., Heiser, L. M., Charles, R. P., Rabinovich, B. A., Hann, B., Dankort, D., Spellman, P. T., Phillips, W. A., Gray, J. W. & McMahon, M., Aug 1 2012, In : Cancer discovery. 2, 8, p. 685-693 9 p.

Research output: Contribution to journalArticle

146 Scopus citations

A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes

Neve, R. M., Chin, K., Fridlyand, J., Yeh, J., Baehner, F. L., Fevr, T., Clark, L., Bayani, N., Coppe, J. P., Tong, F., Speed, T., Spellman, P. T., DeVries, S., Lapuk, A., Wang, N. J., Kuo, W. L., Stilwell, J. L., Pinkel, D., Albertson, D. G., Waldman, F. M. & 7 others, McCormick, F., Dickson, R. B., Johnson, M. D., Lippman, M., Ethier, S., Gazdar, A. & Gray, J. W., Dec 1 2006, In : Cancer Cell. 10, 6, p. 515-527 13 p.

Research output: Contribution to journalArticle

2065 Scopus citations

A colorectal cancer classification system that associates cellular phenotype and responses to therapy

Sadanandam, A., Lyssiotis, C. A., Homicsko, K., Collisson, E. A., Gibb, W. J., Wullschleger, S., Ostos, L. C. G., Lannon, W. A., Grotzinger, C., Del Rio, M., Lhermitte, B., Olshen, A. B., Wiedenmann, B., Cantley, L. C., Gray, J. W. & Hanahan, D., May 1 2013, In : Nature medicine. 19, 5, p. 619-625 7 p.

Research output: Contribution to journalArticle

507 Scopus citations

A community computational challenge to predict the activity of pairs of compounds

Cellworks Group & NCI DREAM Community, Dec 1 2014, In : Nature biotechnology. 32, 12, p. 1213-1222 10 p.

Research output: Contribution to journalArticle

119 Scopus citations

A community effort to assess and improve drug sensitivity prediction algorithms

NCI DREAM Community, Dec 1 2014, In : Nature biotechnology. 32, 12, p. 1202-1212 11 p.

Research output: Contribution to journalArticle

283 Scopus citations

A comparison of mathematical methods for the analysis of DNA histograms obtained by flow cytometry

Baisch, H., Beck, H. P., Christensen, I. J., Hartmann, N. R., Fried, J., Dean, P. N., Gray, J., Jett, J. H., Johnston, D. A., White, R. A., Nicolini, C., Zeitz, S. & Watson, J. V., 1982, In : Cell Proliferation. 15, 3, p. 235-249 15 p.

Research output: Contribution to journalArticle

106 Scopus citations

A conditional feedback loop regulates Ras activity through EphA2

Macrae, M., Neve, R. M., Rodriguez-Viciana, P., Haqq, C., Yeh, J., Chen, C., Gray, J. W. & McCormick, F., Aug 1 2005, In : Cancer Cell. 8, 2, p. 111-118 8 p.

Research output: Contribution to journalArticle

163 Scopus citations

Activity of distinct growth factor receptor network components in breast tumors uncovers two biologically relevant subtypes

Rahman, M., MacNeil, S. M., Jenkins, D. F., Shrestha, G., Wyatt, S. R., McQuerry, J. A., Piccolo, S. R., Heiser, L. M., Gray, J. W., Johnson, W. E. & Bild, A. H., Apr 26 2017, In : Genome Medicine. 9, 1, 40.

Research output: Contribution to journalArticle

5 Scopus citations

Activity of the kinesin spindle protein inhibitor ispinesib (SB-715992) in models of breast cancer

Purcell, J. W., Davis, J., Reddy, M., Martin, S., Samayoa, K., Vo, H., Thomsen, K., Bean, P., Kuo, W. L., Ziyad, S., Billig, J., Feiler, H. S., Gray, J. W., Wood, K. W. & Cases, S., Jan 15 2010, In : Clinical Cancer Research. 16, 2, p. 566-576 11 p.

Research output: Contribution to journalArticle

54 Scopus citations
43 Scopus citations

A flow system for partial automation of plating efficiency tests

Macevicz, S., Dean, P., Peters, D., Pinkel, D. & Gray, J., Mar 1981, In : Cytometry. 1, 5, p. 346-350 5 p.

Research output: Contribution to journalArticle

2 Scopus citations

A fluid membrane-based soluble ligand-display system for live-cell assays

Nam, J. M., Nair, P. M., Neve, R. M., Gray, J. W. & Groves, J. T., Mar 1 2006, In : ChemBioChem. 7, 3, p. 436-440 5 p.

Research output: Contribution to journalArticle

32 Scopus citations

A fully integrated, three-dimensional fluorescence to electron microscopy correlative workflow

Lopez, C., Bouchet-Marquis, C., Arthur, C. P., McQuiston, J., Heiss, G., Thibault, G., Pullan, L., Kwon, S. & Gray, J., 2017, (Accepted/In press) In : Methods in Cell Biology.

Research output: Contribution to journalArticle

8 Scopus citations

Aging impacts transcriptomes but not genomes of hormone-dependent breast cancers.

Yau, C., Fedele, V., Roydasgupta, R., Fridlyand, J., Hubbard, A., Gray, J. W., Chew, K., Dairkee, S. H., Moore, D. H., Schittulli, F., Tommasi, S., Paradiso, A., Albertson, D. G. & Benz, C. C., 2007, In : Breast cancer research : BCR. 9, 5, p. R59

Research output: Contribution to journalArticle

Open Access
44 Scopus citations

A human breast cell model of preinvasive to invasive transition

Rizki, A., Weaver, V. M., Lee, S. Y., Rozenberg, G. I., Chin, K., Myers, C. A., Bascom, J. L., Mott, J. D., Semeiks, J. R., Grate, L. R., Mian, I. S., Borowsky, A. D., Jensen, R. A., Idowu, M. O., Chen, F., Chen, D. J., Petersen, O. W., Gray, J. W. & Bissell, M. J., Mar 1 2008, In : Cancer Research. 68, 5, p. 1378-1387 10 p.

Research output: Contribution to journalArticle

107 Scopus citations

A mouse Chromosome 11 library generated from sorted chromosomes using linker-adapter polymerase chain reaction

Miyashita, K., Vooijs, M. A., Tucker, J. D., Lee, D. A., Gray, J. W. & Pallavicini, M. G., Jan 1 1994, In : Cytogenetic and Genome Research. 66, 1, p. 54-57 4 p.

Research output: Contribution to journalArticle

21 Scopus citations

Amplification and over-expression of MAP3K3 gene in human breast cancer promotes formation and survival of breast cancer cells

Zhang, H., Fan, Y., Ge, N., Wang, X., Sun, W., Mao, R., Bu, W., Creighton, C. J., Zheng, P., Vasudevan, S., An, L., Yang, J., Zhao, Y. J., Zhang, H., Li, X. N., Rao, P. H., Leung, E., Lu, Y. J., Gray, J. W., Schiff, R. & 3 others, Hilsenbeck, S. G., Osborne, C. K. & Yang, J., Jan 1 2014, In : Journal of Pathology. 232, 1, p. 75-86 12 p.

Research output: Contribution to journalArticle

18 Scopus citations

Amplification of 11q13 in ovarian carcinoma

Brown, L. A., Kalloger, S. E., Miller, M. A., Shih, L. M., McKinney, S. E., Santos, J. L., Swenerton, K., Spellman, P. T., Gray, J., Gilks, C. B. & Huntsman, D. G., Jun 1 2008, In : Genes Chromosomes and Cancer. 47, 6, p. 481-489 9 p.

Research output: Contribution to journalArticle

96 Scopus citations

Amplification of Chromosomal Region 20ql3 in Invasive Breast Cancer: Prognostic Implications

Tanner, M. M., Tirkkonen, M., Kallioniemi, A., Holli, K., Collins, C., Kowbel, D., Gray, J. W., Kallioniemi, O. P. & Isola, J., Aug 1 1995, In : Clinical Cancer Research. 1, 12, p. 1455-1461 7 p.

Research output: Contribution to journalArticle

127 Scopus citations

Amplification of MDS1/EVI1 and EVI1, located in the 3q26.2 amplicon, is associated with favorable patient prognosis in ovarian cancer

Nanjundan, M., Nakayama, Y., Kwai, W. C., Lahad, J., Liu, J., Lu, K., Kuo, W. L., Smith-McCune, K., Fishman, D., Gray, J. W. & Mills, G. B., Apr 1 2007, In : Cancer Research. 67, 7, p. 3074-3084 11 p.

Research output: Contribution to journalArticle

92 Scopus citations

Amplification of PVT1 contributes to the pathophysiology of ovarian and breast cancer

Guan, Y., Kuo, W. L., Stilwell, J. L., Takano, H., Lapuk, A. V., Fridlyand, J., Mao, J. H., Yu, M., Miller, M. A., Santos, J. L., Kalloger, S. E., Carlson, J. W., Ginzinger, D. G., Celniker, S. E., Mills, G. B., Huntsman, D. G. & Gray, J. W., Oct 1 2007, In : Clinical Cancer Research. 13, 19, p. 5745-5755 11 p.

Research output: Contribution to journalArticle

265 Scopus citations

Analog resonances and possible T> mixing in Br77

Gray, J. W. & Legg, J. C., Jan 1 1974, In : Physical Review C. 10, 6, p. 2577-2583 7 p.

Research output: Contribution to journalArticle

6 Scopus citations

Analysis of molecular inversion probe performance for allele copy number determination

Wang, Y., Moorhead, M., Karlin-Neumann, G., Wang, N. J., Ireland, J., Lin, S., Chen, C., Heiser, L. M., Chin, K., Esserman, L., Gray, J. W., Spellman, P. T. & Faham, M., Nov 20 2007, In : Genome biology. 8, 11, R246.

Research output: Contribution to journalArticle

50 Scopus citations

Analytical approaches to detection and characterization of disease-linked chromosome aberrations

Gray, J. W., Kuo, W. L., Liang, J., Pinkel, D., Van den Engh Trask, G. B., Tkachuk, D., Waldman, F. & Westbrook, C., Jan 1 1990, In : Bone marrow transplantation. 6, SUPPL. 1, p. 14-19 6 p.

Research output: Contribution to journalArticle

22 Scopus citations

A nanoplasmonic molecular ruler for measuring nuclease activity and dna footprinting

Liu, G. L., Yin, Y., Kunchakarra, S., Mukherjee, B., Gerion, D., Jett, S. D., Bear, D. G., Gray, J. W., Alivisatos, A. P., Lee, L. P. & Chen, F. F., Jan 2006, In : Nature nanotechnology. 1, 1, p. 47-52 6 p.

Research output: Contribution to journalArticle

261 Scopus citations

An approach to analysis of large-scale correlations between genome changes and clinical endpoints in ovarian cancer

Suzuki, S., Moore, D. H., Ginzinger, D. G., Godfrey, T. E., Barclay, J., Powell, B., Pinkel, D., Zaloudek, C., Lu, K., Mills, G., Berchuck, A. & Gray, J. W., Oct 1 2000, In : Cancer Research. 60, 19, p. 5382-5385 4 p.

Research output: Contribution to journalArticle

101 Scopus citations

An efficient method for selecting unique-sequence clones from DNA libraries and its application to fluorescent staining of human chromosome 21 using in situ hybridization

Fuscoe, J. C., Collins, C. C., Pinkel, D. & Gray, J. W., Jul 1989, In : Genomics. 5, 1, p. 100-109 10 p.

Research output: Contribution to journalArticle

31 Scopus citations

A new mouse tumor model system (RIF-1) for comparison of end-point studies

Twentyman, P. R., Brown, J. M., Gray, J. W., Franko, A. J., Scoles, M. A. & Kallman, R. F., May 2 1980, In : Journal of the National Cancer Institute. 64, 3, p. 595-604 10 p.

Research output: Contribution to journalArticle

413 Scopus citations

A new treasure in the breast cancer gene hunt

Spellman, P. & Gray, J., Apr 1 2011, In : Nature medicine. 17, 4, p. 422-423 2 p.

Research output: Contribution to journalArticle

13 Scopus citations

An improved immunocytochemical procedure for high‐sensitivity detection of incorporated bromodeoxyuridine

Beisker, W., Dolbeare, F. & Gray, J. W., Mar 1987, In : Cytometry. 8, 2, p. 235-239 5 p.

Research output: Contribution to journalArticle

123 Scopus citations

An Integrated View of Copy Number and Allelic Alterations in the Cancer Genome Using Single Nucleotide Polymorphism Arrays

Zhao, X., Li, C., Paez, J. G., Chin, K., Jänne, P. A., Chen, T. H., Girard, L., Minna, J., Christiani, D., Leo, C., Gray, J. W., Sellers, W. R. & Meyerson, M., May 1 2004, In : Cancer Research. 64, 9, p. 3060-3071 12 p.

Research output: Contribution to journalArticle

434 Scopus citations

An integrative genomic and proteomic analysis of PIK3CA, PTEN, and AKT mutations in breast cancer

Stemke-Hale, K., Gonzalez-Angulo, A. M., Lluch, A., Neve, R. M., Kuo, W. L., Davies, M., Carey, M., Hu, Z., Guan, Y., Sahin, A., Symmans, W. F., Pusztai, L., Nolden, L. K., Horlings, H., Berns, K., Hung, M. C., Van De Vijver, M. J., Valero, V., Gray, J. W., Bernards, R. & 2 others, Mills, G. B. & Hennessy, B. T., Aug 1 2008, In : Cancer Research. 68, 15, p. 6084-6091 8 p.

Research output: Contribution to journalArticle

674 Scopus citations

An ultra‐pure in vitro phase synchrony method employing centrifugal elutriation and viable flow cytometric cell sorting

Rice, G. C., Dean, P. N., Gray, J. W. & Dewey, W. C., May 1984, In : Cytometry. 5, 3, p. 289-298 10 p.

Research output: Contribution to journalArticle

15 Scopus citations

A physical map of chromosome 20 established using fluorescence in situ hybridization and digital image analysis

Stokke, T., Collins, C., Kuo, W. L., Kowbel, D., Shadravan, F., Tanner, M., Kallioniemi, A., Kallioniemi, O. P., Pinkel, D., Deaven, L. & Gray, J. W., Jan 1 1995, In : Genomics. 26, 1, p. 134-137 4 p.

Research output: Contribution to journalArticle

57 Scopus citations

Application of confocal laser scanning microscope on fluorescence in situ hybridization (FISH)

Matsuta, M., Matsuta, M., Sasaki, K., Hariu, H., Nishiya, I., Katou, M., Kallioniemi, A., Weier, H. U. & Gray, J. W., Jan 1 1993, In : Acta Histochemica et Cytochemica. 26, 5, p. 415-421 7 p.

Research output: Contribution to journalArticle

4 Scopus citations

Application of flow karyotyping in prenatal detection of chromosome aberrations

Gray, J. W., Trask, B., Van Den Engh, G., Silva, A., Lozes, C., Schonberg, S., Yu, L. C. & Golbus, M. S., Jan 1 1988, In : American Journal of Human Genetics. 42, 1, p. 49-59 11 p.

Research output: Contribution to journalArticle

22 Scopus citations
5 Scopus citations

A primer on regression methods for decoding cis-regulatory logic

Das, D., Pellegrini, M. & Gray, J. W., Jan 1 2009, In : PLoS computational biology. 5, 1, e1000269.

Research output: Contribution to journalArticle

13 Scopus citations

A Programmable System to Perform the Polymerase Chain Reaction

Weier, H. U. & Gray, J. W., Jul 1988, In : DNA. 7, 6, p. 441-447 7 p.

Research output: Contribution to journalArticle

10 Scopus citations

Ara‐C cytokinetic studies in normal tissues in vivo

Pallavicini, M. G. & Gray, J. W., 1982, In : Medical and Pediatric Oncology. 10, 1 S, p. 109-123 15 p.

Research output: Contribution to journalArticle

2 Scopus citations

Ara‐C scheduling: Theoretical and experimental considerations

Gray, J. W. & Pallavicini, M. G., 1982, In : Medical and Pediatric Oncology. 10, 1 S, p. 93-108 16 p.

Research output: Contribution to journalArticle

7 Scopus citations

ARHI is the center of allelic deletion on chromosome 1p31 in ovarian and breast cancers

Peng, H., Xu, F., Pershad, R., Hunt, K. K., Frazier, M. L., Berchuck, A., Gray, J. W., Hogg, D., Bast, R. C. & Yu, Y., May 19 2000, In : International Journal of Cancer. 86, 5, p. 690-694 5 p.

Research output: Contribution to journalArticle

52 Scopus citations

A robust prognostic signature for hormone-positive node-negative breast cancer

Griffith, O. L., Pepin, F., Enache, O. M., Heiser, L. M., Collisson, E. A., Spellman, P. T. & Gray, J. W., Oct 11 2013, In : Genome Medicine. 5, 10, 92.

Research output: Contribution to journalArticle

11 Scopus citations

Array-based comparative genomic hybridization analysis identified cyclin D1 as a target oncogene at 11q13.3 in nasopharyngeal carcinoma

Hui, A. B. Y., Or, Y. Y. Y., Takano, H., Tsang, R. K. Y., To, K. F., Guan, X. Y., Sham, J. S. T., Hung, K. W. K., Lam, C. N. Y., Van Hasselt, C. A., Kuo, W. L., Gray, J. W., Huang, D. P. & Lo, K. W., Sep 15 2005, In : Cancer Research. 65, 18, p. 8125-8133 9 p.

Research output: Contribution to journalArticle

86 Scopus citations

Array comparative genomic hybridization with cyanin cis-platinum-labeled DNAs

Raap, A. K., Van Der Burg, M. J. M., Knijnenburg, J., Meershoek, E., Rosenberg, C., Gray, J. W., Wiegant, J., Hodgson, J. G. & Tanke, H. J., Jul 2004, In : BioTechniques. 37, 1, p. 130-134 5 p.

Research output: Contribution to journalArticle

Open Access
14 Scopus citations