• 65802 Citations
  • 111 h-Index
1971 …2020

Research output per year

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Research Output

Cytokinetic properties of asynchronous and cytosine arabinoside perturbed murine tumors measured by simultaneous bromodeoxyuridine/DNA analyses

Pallavicini, M. G., Summers, L. J., Dolbeare, F. D. & Gray, J., 1985, Cytometry. 6 ed. Vol. 6. p. 602-610 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

47 Scopus citations

Cytometry and Genetics

Cram, L. S., Gray, J. & Carter, N. P., Mar 2004, In : Cytometry Part A. 58, 1, p. 33-36 4 p.

Research output: Contribution to journalArticle

4 Scopus citations

Decoding the fine-scale structure of a breast cancer genome and transcriptome

Volik, S., Raphael, B. J., Huang, G., Stratton, M. R., Bignel, G., Murnane, J., Brebner, J. H., Bajsarowicz, K., Paris, P. L., Tao, Q., Kowbel, D., Lapuk, A., Shagin, D. A., Shagina, I. A., Gray, J., Cheng, J. F., De Jong, P. J., Pevzner, P. & Collins, C., Mar 2006, In : Genome Research. 16, 3, p. 394-404 11 p.

Research output: Contribution to journalArticle

48 Scopus citations

Decoupling of the PI3K pathway via mutation necessitates combinatorial treatment in HER2+ breast cancer

Korkola, J., Collisson, E. A., Heiser, L., Oates, C., Bayani, N., Itani, S., Esch, A., Thompson, W., Griffith, O. L., Wang, N. J., Kuo, W. L., Cooper, B., Billig, J., Ziyad, S., Hung, J. L., Feiler, H., Lu, Y., Mills, G., Spellman, P., Tomlin, C. & 3 others, Mukherjee, S., Gray, J. & Jakkula, L., Jul 16 2015, In : PLoS One. 10, 7, e0133219.

Research output: Contribution to journalArticle

10 Scopus citations

Deep learning based Nucleus Classification in pancreas histological images

Chang, Y. H., Thibault, G., Madin, O., Azimi, V., Meyers, C., Johnson, B., Link, J., Margolin, A. & Gray, J., Sep 13 2017, 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Smarter Technology for a Healthier World, EMBC 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 672-675 4 p. 8036914

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Deficiency of p53 accelerates mammary tumorigenesis in Wnt-1 transgenic mice and promotes chromosomal instability

Donehower, L. A., Godley, L. A., Aldaz, C. M., Pyle, R., Shi, Y. P., Pinkel, D., Gray, J., Bradley, A., Medina, D. & Varmus, H. E., 1995, In : Genes and Development. 9, 7, p. 882-895 14 p.

Research output: Contribution to journalArticle

243 Scopus citations

Defining the steps in a multistep mouse model for mammary carcinogenesis

Varmus, H. E., Godley, L. A., Roy, S., Taylor, I. C. A., Yuschenkoff, L., Shi -, Y. P., Pinkel, D., Gray, J., Pyle, R., Aldaz, C. M., Bradley, A., Medina, D. & Donehower, L. A., 1994, In : Cold Spring Harbor Symposia on Quantitative Biology. 59, p. 491-499 9 p.

Research output: Contribution to journalArticle

4 Scopus citations

Deletion of chromosome 11q predicts response to anthracycline-based chemotherapy in early breast cancer

Climent, J., Dimitrow, P., Fridlyand, J., Palacios, J., Siebert, R., Albertson, D. G., Gray, J., Pinkel, D., Lluch, A. & Martinez-Climent, J. A., Jan 15 2007, In : Cancer Research. 67, 2, p. 818-826 9 p.

Research output: Contribution to journalArticle

61 Scopus citations

Deletion of chromosome 17p loci in breast cancer cells detected by fluorescence in situ hybridization

Matsumura, K., Kallioniemi, A., Kallioniemi, O., Chen, L., Smith, H. S., Pinkel, D., Gray, J. & Waldman, F. M., Jun 15 1992, In : Cancer Research. 52, 12, p. 3474-3477 4 p.

Research output: Contribution to journalArticle

107 Scopus citations
92 Scopus citations

Derivative domain fitting: A new method for resolving a mixture of normal distributions in the presence of a contaminating background

Moore, D. H. & Gray, J., 1993, In : Cytometry. 14, 5, p. 510-518 9 p.

Research output: Contribution to journalArticle

3 Scopus citations

Design considerations for array CGH to oligonucleotide arrays

Baldocchi, R. A., Glynne, R. J., Chin, K-Y., Kowbel, D., Collins, C., Mack, D. H. & Gray, J., Oct 2005, In : Cytometry Part A. 67, 2, p. 129-136 8 p.

Research output: Contribution to journalArticle

7 Scopus citations

Detecting cancer by monitoring circulating tumor DNA.

Spellman, P. & Gray, J., 2014, In : Nature Medicine. 20, 5, p. 474-475 2 p.

Research output: Contribution to journalArticle

28 Scopus citations

Detection and mapping of amplified DNA sequences in breast cancer by comparative genomic hybridization

Kallioniemi, A., Kallioniemi, O. P., Piper, J., Tanner, M., Stokke, T., Chen, L., Smith, H. S., Pinkel, D., Gray, J. & Waldman, F. M., Mar 15 1994, In : Proceedings of the National Academy of Sciences of the United States of America. 91, 6, p. 2156-2160 5 p.

Research output: Contribution to journalArticle

674 Scopus citations

Detection of a human chromosomal translocation t(8;9) in a baby with multiple malformations using two-color fluorescence in situ hybridization

Sasaki, K., Pinkel, D., Tsukahara, M., Murano, I. & Gray, J., 1994, In : Pathology International. 44, 2, p. 145-150 6 p.

Research output: Contribution to journalArticle

2 Scopus citations

Detection of aneuploidy involving chromosomes 13, 18, or 21, by fluorescence in situ hybridization (FISH) to interphase and metaphase amniocytes

Kuo, W. L., Tenjin, H., Segraves, R., Pinkel, D., Golbus, M. S. & Gray, J., Jul 1991, In : American Journal of Human Genetics. 49, 1, p. 112-119 8 p.

Research output: Contribution to journalArticle

113 Scopus citations

Detection of bcr-abl fusion in chronic myelogeneous leukemia by in situ hybridization

Tkachuk, D. C., Westbrook, C. A., Andreeff, M., Donlon, T. A., Cleary, M. L., Suryanarayan, K., Homge, M., Redner, A., Gray, J. & Pinkel, D., Oct 26 1990, In : Science. 250, 4980, p. 559-562 4 p.

Research output: Contribution to journalArticle

329 Scopus citations

Detection of cytosine arabinoside resistant cells at low frequency using the bromodeoxyuridine/DNA assay

Waldman, F. M., Dolbeare, F. & Gray, J., 1985, Cytometry. 6 ed. Vol. 6. p. 657-662 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

16 Scopus citations

Detection of retinoblastoma gene copy number in metaphase chromosomes and interphase nuclei by fluorescence in situ hybridization

Kallioniemi, A., Kallioniemi, O. P., Waidman, F. M., Chen, L. C., Yu, L. C., Fung, Y. K. T., Smith, H. S., Pinkel, D. & Gray, J., 1992, In : Cytogenetic and Genome Research. 60, 3-4, p. 190-193 4 p.

Research output: Contribution to journalArticle

45 Scopus citations

Dicentric chromosome frequency analysis using slit-scan flow cytometry

Lucas, J. N., Mullikin, J. C. & Gray, J., 1991, In : Cytometry. 12, 4, p. 316-322 7 p.

Research output: Contribution to journalArticle

15 Scopus citations

Dicer, Drosha, and outcomes in patients with ovarian cancer

Merritt, W. M., Lin, Y. G., Han, L. Y., Kamat, A. A., Spannuth, W. A., Schmandt, R., Urbauer, D., Pennacchio, L. A., Cheng, J. F., Nick, A. M., Deavers, M. T., Mourad-Zeidan, A., Wang, H., Mueller, P., Lenburg, M. E., Gray, J., Mok, S., Birrer, M. J., Lopez-Berestein, G., Coleman, R. L. & 2 others, Bar-Eli, M. & Sood, A. K., Dec 18 2008, In : New England Journal of Medicine. 359, 25, p. 2641-2650 10 p.

Research output: Contribution to journalArticle

526 Scopus citations

Differential staining of human and murine chromatin in situ by hybridization with species-specific satellite DNA probes

Weier, H. U. G., Zitzelsberger, H. F. & Gray, J., Feb 14 1992, In : Biochemical and Biophysical Research Communications. 182, 3, p. 1313-1319 7 p.

Research output: Contribution to journalArticle

5 Scopus citations

Differentiation-state plasticity is a targetable resistance mechanism in basal-like breast cancer

Risom, T., Langer, E. M., Chapman, M. P., Rantala, J., Fields, A. J., Boniface, C., Alvarez, M. J., Kendsersky, N. D., Pelz, C. R., Johnson-Camacho, K., Dobrolecki, L. E., Chin, K-Y., Aswani, A. J., Wang, N. J., Califano, A., Lewis, M. T., Tomlin, C. J., Spellman, P., Adey, A., Gray, J. & 1 others, Sears, R., Dec 1 2018, In : Nature Communications. 9, 1, 3815.

Research output: Contribution to journalArticle

18 Scopus citations

Digital imaging microscopy for molecular cytogenetics

Gray, J., Lockett, S., Mascio, L., Mullikin, J., Pinkel, D., Piper, J., Sudar, D. & Thompson, C., 1994, Proceedings - Annual Meeting, Microscopy Society of America. Bailey, G. W. & Garratt-Reed, A. J. (eds.). p. 82-83 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

DIRAS3 (ARHI) Blocks RAS/MAPK Signaling by Binding Directly to RAS and Disrupting RAS Clusters

Sutton, M. N., Lu, Z., Li, Y. C., Zhou, Y., Huang, T., Reger, A. S., Hurwitz, A. M., Palzkill, T., Logsdon, C., Liang, X., Gray, J. W., Nan, X., Hancock, J., Wahl, G. M. & Bast, R. C., Dec 10 2019, In : Cell Reports. 29, 11, p. 3448-3459.e6

Research output: Contribution to journalArticle

Open Access

Disentangling multidimensional spatio-temporal data into their common and aberrant responses

Chang, Y. H., Korkola, J., Amin, D. N., Moasser, M. M., Carmena, J. M., Gray, J. & Tomlin, C. J., Apr 22 2015, In : PLoS One. 10, 4, e0121607.

Research output: Contribution to journalArticle

1 Scopus citations

Display and analysis of flow cytometric data.

Gray, J. & Dean, P. N., 1980, In : Annual Review of Biophysics and Bioengineering. 9, p. 509-539 31 p.

Research output: Contribution to journalArticle

37 Scopus citations
5 Scopus citations

DNA copy number changes associated with characteristic LOH in islet cell carcinomas of transgenic mice

Shi, Y. P., Naik, P., Dietrich, W. F., Gray, J., Hanahan, D. & Pinkel, D., 1997, In : Genes Chromosomes and Cancer. 19, 2, p. 104-111 8 p.

Research output: Contribution to journalArticle

22 Scopus citations

Do breast cancer cell lines provide a relevant model of the patient tumor methylome?

Cope, L. M., Fackler, M. J., Lopez-Bujanda, Z., Wolff, A. C., Visvanathan, K., Gray, J., Sukumar, S. & Umbricht, C. B., Aug 26 2014, In : PLoS One. 9, 8, e105545.

Research output: Contribution to journalArticle

10 Scopus citations

Dose-dependent response of KHT tumour cells to ARA-C

Dolbeare, F., Pallavicini, M. G. & Gray, J., 1982, In : Cell and Tissue Kinetics. 15, 6, p. 678 1 p.

Research output: Contribution to journalArticle

1 Scopus citations

Double labeling with iodo- and bromodeoxyuridine for cell kinetic studies

Shibui, S., Hoshino, T., Vanderlaan, M. & Gray, J., 1989, In : Journal of Histochemistry and Cytochemistry. 37, 7, p. 1007-1011 5 p.

Research output: Contribution to journalArticle

72 Scopus citations

Effect of methylglyoxal-bis (guanylhydrazone), an inhibitor of spermidine and spermine synthesis, on cell cycle traverse

Heby, O., Marton, L. J., Wilson, C. B. & Gray, J., 1977, In : European Journal of Cancer (1965). 13, 9, p. 1009-1017 9 p.

Research output: Contribution to journalArticle

40 Scopus citations

Effects of methotrexate on transfected DNA stability in mammalian cells

Pallavicini, M. G., Deteresa, P. S., Rosette, C., Gray, J. & Wurm, F. M., Jan 1990, In : Molecular and Cellular Biology. 10, 1, p. 401-404 4 p.

Research output: Contribution to journalArticle

76 Scopus citations

Efficient, interactive, and three-dimensional segmentation of cell nuclei in thick tissue sections

Lockett, S. J., Sudar, D., Thompson, C. T., Pinkel, D. & Gray, J., Apr 1 1998, In : Cytometry. 31, 4, p. 275-286 12 p.

Research output: Contribution to journalArticle

46 Scopus citations

EGFR intron 1 polymorphism in Asian populations and its correlation with EGFR gene expression and amplification in breast tumor tissues

Zhou, Q., Yin, B. C., Jada, S. R., Wan, T. L., Kuo, W. L., Gray, J., Lee, A. S. G. & Chowbay, B., Nov 2006, In : Cancer Biology and Therapy. 5, 11, p. 1445-1449 5 p.

Research output: Contribution to journalArticle

11 Scopus citations

Elevated levels of proliferating and recently migrated tumor-associated macrophages confer increased aggressiveness and worse outcomes in breast cancer

Mukhtar, R. A., Moore, A. P., Tandon, V. J., Nseyo, O., Twomey, P., Adisa, C. A., Eleweke, N., Au, A., Baehner, F. L., Moore, D. H., McGrath, M. S., Olopade, O. I., Gray, J., Campbell, M. J. & Esserman, L. J., Nov 2012, In : Annals of Surgical Oncology. 19, 12, p. 3979-3986 8 p.

Research output: Contribution to journalArticle

17 Scopus citations

Emerging role of RAB GTPases in cancer and human disease

Cheng, K. W., Lahad, J. P., Gray, J. & Mills, G., Apr 1 2005, In : Cancer Research. 65, 7, p. 2516-2519 4 p.

Research output: Contribution to journalArticle

159 Scopus citations

Endocytic trafficking of laminin is controlled by dystroglycan and is disrupted in cancers

Leonoudakis, D., Huang, G., Akhavan, A., Fata, J. E., Singh, M., Gray, J. & Muschler, J., 2014, In : Journal of Cell Science. 127, 22, p. 4894-4903 10 p.

Research output: Contribution to journalArticle

10 Scopus citations

End-sequence profiling: Sequence-based analysis of aberrant genomes

Volik, S., Zhao, S., Chin, K-Y., Brebner, J. H., Herndon, D. R., Tao, Q., Kowbel, D., Huang, G., Lapuk, A., Kuo, W. L., Magrane, G., De Jong, P., Gray, J. & Collins, C., Jun 24 2003, In : Proceedings of the National Academy of Sciences of the United States of America. 100, 13, p. 7696-7701 6 p.

Research output: Contribution to journalArticle

111 Scopus citations

Enhanced NFκB and AP-1 transcriptional activity associated with antiestrogen resistant breast cancer

Zhou, Y., Yau, C., Gray, J., Chew, K., Dairkee, S. H., Moore, D. H., Eppenberger, U., Eppenberger-Castori, S. & Benz, C. C., 2007, In : BMC Cancer. 7, 59.

Research output: Contribution to journalArticle

139 Scopus citations

Enrichment of murine hemopoietic clonogenic cells by multivariate analyses and sorting

Pallavicini, M. G., Summers, L. J., Dean, P. N. & Gray, J., 1985, In : Experimental Hematology. 13, 11, p. 1173-1181 9 p.

Research output: Contribution to journalArticle

21 Scopus citations

Enzymatic production of single-stranded DNA as a target for fluorescence in situ hybridization

van Dekken, H., Pinkel, D., Mullikin, J. & Gray, J., Sep 1988, In : Chromosoma. 97, 1, p. 1-5 5 p.

Research output: Contribution to journalArticle

21 Scopus citations

Epigenomic inactivation of RasGAPs activates RAS signaling in a subset of luminal B breast cancers

Sears, R. & Gray, J., Feb 1 2017, In : Cancer Discovery. 7, 2, p. 131-133 3 p.

Research output: Contribution to journalArticle

6 Scopus citations

ERBB2 amplification in breast cancer analyzed by fluorescence in situ hybridization

Kallioniemi, O. P., Kallioniemi, A., Kurisu, W., Thor, A., Chen, L. C., Smith, H. S., Waldman, F. M., Pinkel, D. & Gray, J., 1992, In : Proceedings of the National Academy of Sciences of the United States of America. 89, 12, p. 5321-5325 5 p.

Research output: Contribution to journalArticle

438 Scopus citations

ERBB receptor regulation of ESX/ELF3 promotes invasion in breast epithelial cells

Coppe, J. P., Amend, C., Semeiks, J., Baehner, F. L., Bayani, N., Campisi, J., Benz, C. C., Gray, J. & Neve, R. M., 2010, In : Open Cancer Journal. 3, SPEC. ISSUE 1, p. 89-100 12 p.

Research output: Contribution to journalArticle

4 Scopus citations

Erratum

Lucas, J. N., Tenjin, T., Straume, T., Pinkel, D., Moore, D., Litt, M. & Gray, J., 1989, In : International Journal of Radiation Biology. 56, 2, p. 201 1 p.

Research output: Contribution to journalArticle

23 Scopus citations

Erratum: Publisher Correction: Combating subclonal evolution of resistant cancer phenotypes (Nature communications (2017) 8 1 (1231))

Brady, S. W., McQuerry, J. A., Qiao, Y., Piccolo, S. R., Shrestha, G., Jenkins, D. F., Layer, R. M., Pedersen, B. S., Miller, R. H., Esch, A., Selitsky, S. R., Parker, J. S., Anderson, L. A., Dalley, B. K., Factor, R. E., Reddy, C. B., Boltax, J. P., Li, D. Y., Moos, P. J., Gray, J. & 8 others, Heiser, L., Buys, S. S., Cohen, A. L., Johnson, W. E., Quinlan, A. R., Marth, G., Werner, T. L. & Bild, A. H., Feb 5 2018, In : Nature Communications. 9, 1, 1 p.

Research output: Contribution to journalComment/debate

Erratum: Functional proteomics identifies miRNAs to target a p27/Myc/phospho-Rb signature in breast and ovarian cancer (Oncogene (2016) 35 (691-701) DOI:10.1038/onc.2014.469)

Seviour, E. G., Sehgal, V., Lu, Y., Luo, Z., Moss, T., Zhang, F., Hill, S. M., Liu, W., Maiti, S. N., Cooper, L., Azencot, R., Lopez-Berestein, G., Rodriguez-Aguayo, C., Roopaimoole, R., Pecot, C. V., Sood, A. K., Mukherjee, S., Gray, J., Mills, G. & Ram, P. T., Feb 11 2016, In : Oncogene. 35, 6, p. 801 1 p.

Research output: Contribution to journalComment/debate

3 Scopus citations

Erratum: Genome scanning with array CGH delineates regional alterations in mouse islet carcinomas (Journal of Vascular Technology (2001) 29 (459-464))

Hodgson, G., Hager, J. H., Volik, S., Hariono, S., Wernick, M., Moore, D., Nowak, N., Albertson, D. G., Pinkel, D., Collins, C., Hanahan, D. & Gray, J., 2001, In : Nature Genetics. 29, 4, p. 491 1 p.

Research output: Contribution to journalArticle

6 Scopus citations