• 66999 Citations
  • 112 h-Index
1971 …2020

Research output per year

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Research Output

Chromosomal localization of the γ-glutamyl carboxylase gene at 2p12

Kuo, W. L., Stafford, D. W., Cruces, J., Gray, J. & Jesú, S., Jan 1 1995, In : Genomics. 25, 3, p. 746-748 3 p.

Research output: Contribution to journalArticle

29 Scopus citations

Chromosomal reassignment: Yacs containing both yes1 and thymidylate synthase map to the short arm of chromosome 18

Silverman, G. A., Kuo, W. L., Taillon-Miller, P. & Gray, J. W., Feb 1993, In : Genomics. 15, 2, p. 442-445 4 p.

Research output: Contribution to journalArticle

12 Scopus citations

Chromosome aberrations in solid tumors

Albertson, D. G., Collins, C., McCormick, F. & Gray, J. W., Aug 1 2003, In : Nature genetics. 34, 4, p. 369-376 8 p.

Research output: Contribution to journalReview article

571 Scopus citations

Chromosome arm 20q gains and other genomic alterations in colorectal cancer metastatic to liver, as analyzed by comparative genomic hybridization and fluorescence in situ hybridization

Korn, W. M., Yasutake, T., Kuo, W. L., Warren, R. S., Collins, C., Tomita, M., Gray, J. & Waldman, F. M., Jun 1 1999, In : Genes Chromosomes and Cancer. 25, 2, p. 82-90 9 p.

Research output: Contribution to journalArticle

115 Scopus citations

Chromosome classification and purification using flow cytometry and sorting.

Gray, J. W. & Langlois, R. G., 1986, In : Annual review of biophysics and biophysical chemistry. 15, p. 195-235 41 p.

Research output: Contribution to journalReview article

42 Scopus citations

Chromosome heteromorphism quantified by high-resolution bivariate flow karyotyping

Trask, B., Van den Engh, G., Mayall, B. & Gray, J. W., Jan 1 1989, In : American Journal of Human Genetics. 45, 5, p. 739-752 14 p.

Research output: Contribution to journalArticle

57 Scopus citations

Chromosome measurement and sorting by flow systems

Gray, J. W., Carrano, A. V., Steinmetz, L. L., Van Dilla, M. A., Moore IInd, D. H., Mayall, B. H. & Mendelsohn, M. L., Dec 1 1975, In : Proceedings of the National Academy of Sciences of the United States of America. 72, 4, p. 1231-1234 4 p.

Research output: Contribution to journalArticle

139 Scopus citations

Circulating-tumor DNA as an early detection and diagnostic tool

Butler, T. M., Spellman, P. & Gray, J., Feb 1 2017, In : Current Opinion in Genetics and Development. 42, p. 14-21 8 p.

Research output: Contribution to journalReview article

28 Scopus citations

Circulating tumor DNA dynamics using patient-customized assays are associated with outcome in neoadjuvantly treated breast cancer

Butler, T. M., Boniface, C. T., Johnson-Camacho, K., Tabatabaei, S., Melendez, D., Kelley, T., Gray, J., Corless, C. L. & Spellman, P. T., Jan 1 2019, In : Cold Spring Harbor Molecular Case Studies. 5, 2, a003772.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Clinical applications of fluorescence in situ hybridization

Tkachuk, D. C., Pinkel, D., Kuo, W. L., Weier, H. U. & Gray, J. W., Apr 1991, In : Genetic Analysis: Biomolecular Engineering. 8, 2, p. 67-74 8 p.

Research output: Contribution to journalArticle

81 Scopus citations

Clinical applications of the bromodeoxyuridine/DNA assay

Waldman, F. M., Dolbeare, F. & Gray, J., 1988, In : Cytometry. 9, 3 S, p. 65-72 8 p.

Research output: Contribution to journalArticle

3 Scopus citations

Clinical applications of the bromodeoxyuridine/DNA assay.

Waldman, F. M., Dolbeare, F. & Gray, J., 1988, In : Cytometry. Supplement : the journal of the Society for Analytical Cytology. 3, p. 65-72 8 p.

Research output: Contribution to journalReview article

10 Scopus citations

Cloning, mapping, and in vivo localization of a human member of the PKCI-1 protein family (PRKCNH1)

Brzoska, P. M., Chen, H., Levin, N. A., Kuo, W. L., Collins, C., Fu, K. K., Gray, J. W. & Christman, M. F., Aug 15 1996, In : Genomics. 36, 1, p. 151-156 6 p.

Research output: Contribution to journalArticle

22 Scopus citations

Cloning and Characterization of EagI YACs from Human Chromosome 21

Gingrich, J. C., Lowry, S. R., Kuo, W. L., Gray, J., Smith, C. L. & Cantori, C. R., Jan 1993, In : Genomics. 15, 1, p. 228-230 3 p.

Research output: Contribution to journalArticle

6 Scopus citations

Cloning of genomic sequences from the human Y chromosome after purification by dual beam flow sorting

Müller, C. R., Davies, K. E., Cremer, C., Rappold, G., Gray, J. W. & Ropers, H. H., Aug 1 1983, In : Human genetics. 64, 2, p. 110-115 6 p.

Research output: Contribution to journalArticle

13 Scopus citations

cmIF: A Python Library for Scalable Multiplex Imaging Pipelines

Eng, J., Bucher, E., Gray, E., Campbell, L. G., Thibault, G., Heiser, L., Gibbs, S., Gray, J. W., Chin, K. & Chang, Y. H., Jan 1 2019, Mathematical and Computational Oncology - 1st International Symposium, ISMCO 2019, Proceedings. Bebis, G., Benos, T., Chen, K., Jahn, K. & Lima, E. (eds.). Springer, p. 37-43 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11826 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Combating subclonal evolution of resistant cancer phenotypes

Brady, S. W., McQuerry, J. A., Qiao, Y., Piccolo, S. R., Shrestha, G., Jenkins, D. F., Layer, R. M., Pedersen, B. S., Miller, R. H., Esch, A., Selitsky, S. R., Parker, J. S., Anderson, L. A., Dalley, B. K., Factor, R. E., Reddy, C. B., Boltax, J. P., Li, D. Y., Moos, P. J., Gray, J. W. & 8 others, Heiser, L. M., Buys, S. S., Cohen, A. L., Johnson, W. E., Quinlan, A. R., Marth, G., Werner, T. L. & Bild, A. H., Dec 1 2017, In : Nature communications. 8, 1, 1231.

Research output: Contribution to journalArticle

31 Scopus citations

Combinatorial Microenvironments Impose a Continuum of Cellular Responses to a Single Pathway-Targeted Anti-cancer Compound

Lin, C. H., Jokela, T., Gray, J. & LaBarge, M. A., Oct 10 2017, In : Cell Reports. 21, 2, p. 533-545 13 p.

Research output: Contribution to journalArticle

11 Scopus citations

Comparative analyses of gene copy number and mRNA expression in glioblastoma multiforme tumors and xenografts

Hodgson, J. G., Yeh, R. F., Ray, A., Wang, N. J., Smirnov, I., Yu, M., Hariono, S., Silber, J., Feiler, H. S., Gray, J. W., Spellman, P. T., Vandenberg, S. R., Berger, M. S. & James, C. D., Oct 1 2009, In : Neuro-Oncology. 11, 5, p. 477-487 11 p.

Research output: Contribution to journalArticle

87 Scopus citations

Comparative genomic hybridization: A rapid new method for detecting and mapping DNA amplification in tumors

Kallioniemi, O. P., Kallioniemi, A., Sudar, D., Rutovitz, D., Gray, J. W., Waldman, F. & Pinkel, D., Dec 1 1993, In : Seminars in Cancer Biology. 4, 1, p. 41-46 6 p.

Research output: Contribution to journalArticle

202 Scopus citations

Comparative genomic hybridization.

DeVries, S., Gray, J. W., Pinkel, D., Waldman, F. M. & Sudar, D., May 2001, In : Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.]. Chapter 4, p. Unit4.6

Research output: Contribution to journalArticle

2 Scopus citations

Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors

Kallioniemi, A., Kallioniemi, O. P., Sudar, D., Rutovitz, D., Gray, J. W., Waldman, F. & Pinkel, D., Jan 1 1992, In : Science. 258, 5083, p. 818-821 4 p.

Research output: Contribution to journalArticle

2745 Scopus citations

Comparison of sparse coding and kernel methods for histopathological classification of gliobastoma multiforme

Han, J., Chang, H., Loss, L., Zhang, K., Baehner, F. L., Gray, J. W., Spellman, P. & Parvin, B., Nov 2 2011, 2011 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI'11. p. 711-714 4 p. 5872505. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

22 Scopus citations

Comprehensive genome sequence analysis of a breast cancer amplicon

Collins, C., Volik, S., Kowbel, D., Ginzinger, D., Ylstra, B., Cloutier, T., Hawkins, T., Predki, P., Martin, C., Wernick, M., Kuo, W. L., Alberts, A. & Gray, J. W., Sep 22 2001, In : Genome Research. 11, 6, p. 1034-1042 9 p.

Research output: Contribution to journalArticle

74 Scopus citations

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

McLendon, R., Friedman, A., Bigner, D., Van Meir, E. G., Brat, D. J., Mastrogianakis, G. M., Olson, J. J., Mikkelsen, T., Lehman, N., Aldape, K., Yung, W. K. A., Bogler, O., Weinstein, J. N., VandenBerg, S., Berger, M., Prados, M., Muzny, D., Morgan, M., Scherer, S., Sabo, A. & 211 others, Nazareth, L., Lewis, L., Hall, O., Zhu, Y., Ren, Y., Alvi, O., Yao, J., Hawes, A., Jhangiani, S., Fowler, G., San Lucas, A., Kovar, C., Cree, A., Dinh, H., Santibanez, J., Joshi, V., Gonzalez-Garay, M. L., Miller, C. A., Milosavljevic, A., Donehower, L., Wheeler, D. A., Gibbs, R. A., Cibulskis, K., Sougnez, C., Fennell, T., Mahan, S., Wilkinson, J., Ziaugra, L., Onofrio, R., Bloom, T., Nicol, R., Ardlie, K., Baldwin, J., Gabriel, S., Lander, E. S., Ding, L., Fulton, R. S., McLellan, M. D., Wallis, J., Larson, D. E., Shi, X., Abbott, R., Fulton, L., Chen, K., Koboldt, D. C., Wendl, M. C., Meyer, R., Tang, Y., Lin, L., Osborne, J. R., Dunford-Shore, B. H., Miner, T. L., Delehaunty, K., Markovic, C., Swift, G., Courtney, W., Pohl, C., Abbott, S., Hawkins, A., Leong, S., Haipek, C., Schmidt, H., Wiechert, M., Vickery, T., Scott, S., Dooling, D. J., Chinwalla, A., Weinstock, G. M., Mardis, E. R., Wilson, R. K., Getz, G., Winckler, W., Verhaak, R. G. W., Lawrence, M. S., O'Kelly, M., Robinson, J., Alexe, G., Beroukhim, R., Carter, S., Chiang, D., Gould, J., Gupta, S., Korn, J., Mermel, C., Mesirov, J., Monti, S., Nguyen, H., Parkin, M., Reich, M., Stransky, N., Weir, B. A., Garraway, L., Golub, T., Meyerson, M., Chin, L., Protopopov, A., Zhang, J., Perna, I., Aronson, S., Sathiamoorthy, N., Ren, G., Yao, J., Wiedemeyer, W. R., Kim, H., Sek, W. K., Xiao, Y., Kohane, I. S., Seidman, J., Park, P. J., Kucherlapati, R., Laird, P. W., Cope, L., Herman, J. G., Weisenberger, D. J., Pan, F., Van Den Berg, D., Van Neste, L., Joo, M. Y., Schuebel, K. E., Baylin, S. B., Absher, D. M., Li, J. Z., Southwick, A., Brady, S., Aggarwal, A., Chung, T., Sherlock, G., Brooks, J. D., Myers, R. M., Spellman, P. T., Purdom, E., Jakkula, L. R., Lapuk, A. V., Marr, H., Dorton, S., Yoon, G. C., Han, J., Ray, A., Wang, V., Durinck, S., Robinson, M., Wang, N. J., Vranizan, K., Peng, V., Van Name, E., Fontenay, G. V., Ngai, J., Conboy, J. G., Parvin, B., Feiler, H. S., Speed, T. P., Gray, J. W., Brennan, C., Socci, N. D., Olshen, A., Taylor, B. S., Lash, A., Schultz, N., Reva, B., Antipin, Y., Stukalov, A., Gross, B., Cerami, E., Wei, Q. W., Qin, L. X., Seshan, V. E., Villafania, L., Cavatore, M., Borsu, L., Viale, A., Gerald, W., Sander, C., Ladanyi, M., Perou, C. M., Hayes, D. N., Topal, M. D., Hoadley, K. A., Qi, Y., Balu, S., Shi, Y., Wu, J., Penny, R., Bittner, M., Shelton, T., Lenkiewicz, E., Morris, S., Beasley, D., Sanders, S., Kahn, A., Sfeir, R., Chen, J., Nassau, D., Feng, L., Hickey, E., Barker, A., Gerhard, D. S., Vockley, J., Compton, C., Vaught, J., Fielding, P., Ferguson, M. L., Schaefer, C., Zhang, J., Madhavan, S., Buetow, K. H., Collins, F., Good, P., Guyer, M., Ozenberger, B., Peterson, J. & Thomson, E., Oct 23 2008, In : Nature. 455, 7216, p. 1061-1068 8 p.

Research output: Contribution to journalArticle

4666 Scopus citations

Comprehensive sequence analysis of a human 20q13.2 cancer amplicon

Collins, C., Volik, S., Kowbel, D., Wernick, M., Hawkins, T., Predki, P., Kuo, W. L. & Gray, J., 2001, In : Nature Genetics. 27, 4S, p. 48 1 p.

Research output: Contribution to journalArticle

Computational BAC Clone Contig Assembly for Comprehensive Genome Analysis

Lapuk, A., Volik, S., Vincent, R., Chin, K., Kuo, W. L., De Jong, P., Collins, C. & Gray, J. W., May 1 2004, In : Genes Chromosomes and Cancer. 40, 1, p. 66-71 6 p.

Research output: Contribution to journalArticle

12 Scopus citations

Computer image analysis of comparative genomic hybridization

Piper, J., Rutovitz, D., Sudar, D., Kallioniemi, A., Kallioniemi, OP. P., Waldman, F. M., Gray, J. W. & Pinkel, D., Jan 1 1995, In : Cytometry. 19, 1, p. 10-26 17 p.

Research output: Contribution to journalArticle

235 Scopus citations

Construction and characterization of a yeast artificial chromosome library containing 1.5 equivalents of human chromosome 21

Potier, M. C., Kuo, W. L., Dutriaux, A., Gray, J. & Goedert, M., Oct 1992, In : Genomics. 14, 2, p. 481-483 3 p.

Research output: Contribution to journalArticle

14 Scopus citations

Construction and characterization of plasmid libraries enriched in sequences from single human chromosomes

Collins, C., Kuo, W. L., Segraves, R., Fuscoe, J., Pinkel, D. & Gray, J. W., Dec 1991, In : Genomics. 11, 4, p. 997-1006 10 p.

Research output: Contribution to journalArticle

212 Scopus citations

Construction of human chromosome-specific DNA libraries from flow-sorted chromosomes

Deaven, L. L., van Dilla, M. A., Bartholdi, M. F., Carrano, A. V., Cram, L. S., Fuscoe, J. C., Gray, J. W., Hildebrand, C. E., Moyzis, R. K. & Perlman, J., Dec 1 1986, In : Cold Spring Harbor symposia on quantitative biology. 51, 1, p. 159-167 9 p.

Research output: Contribution to journalArticle

94 Scopus citations

Context Specificity in Causal Signaling Networks Revealed by Phosphoprotein Profiling

Hill, S. M., Nesser, N. K., Johnson-Camacho, K., Jeffress, M., Johnson, A., Boniface, C., Spencer, S. E. F., Lu, Y., Heiser, L. M., Lawrence, Y., Pande, N. T., Korkola, J. E., Gray, J. W., Mills, G. B., Mukherjee, S. & Spellman, P. T., Jan 25 2017, In : Cell Systems. 4, 1, p. 73-83.e10

Research output: Contribution to journalArticle

12 Scopus citations

Copy number aberrations in mouse breast tumors reveal loci and genes important in tumorigenic receptor tyrosine kinase signaling

Hodgson, J. G., Malek, T., Bornstein, S., Hariono, S., Ginzinger, D. G., Muller, W. J. & Gray, J. W., Nov 1 2005, In : Cancer Research. 65, 21, p. 9695-9704 10 p.

Research output: Contribution to journalArticle

41 Scopus citations

Copy Number Gain of hsa-miR-569 at 3q26.2 Leads to Loss of TP53INP1 and Aggressiveness of Epithelial Cancers

Chaluvally-Raghavan, P., Zhang, F., Pradeep, S., Hamilton, M. P., Zhao, X., Rupaimoole, R., Moss, T., Lu, Y., Yu, S., Pecot, C. V., Aure, M. R., Peuget, S., Rodriguez-Aguayo, C., Han, H. D., Zhang, D., Venkatanarayan, A., Krohn, M., Kristensen, V. N., Gagea, M., Ram, P. & 11 others, Liu, W., Lopez-Berestein, G., Lorenzi, P. L., Børresen-Dale, A. L., Chin, K., Gray, J., Dusetti, N. J., McGuire, S. E., Flores, E. R., Sood, A. K. & Mills, G. B., Dec 8 2014, In : Cancer Cell. 26, 6, p. 863-879 17 p.

Research output: Contribution to journalArticle

31 Scopus citations

Correction: Decoupling of the PI3K pathway via mutation necessitates combinatorial treatment in HER2+ breast cancer (PLoS ONE (2015) 10:7 (e0133219) DOI: 10.1371/journal.pone.0133219)

Korkola, J. E., Collisson, E. A., Heiser, L. M., Oates, C., Bayani, N., Itani, S., Esch, A., Thompson, W., Griffith, O. L., Wang, N. J., Kuo, W. L., Cooper, B., Billig, J., Ziyad, S., Hung, J. L., Jakkula, L., Feiler, H., Lu, Y., Mills, G. B., Spellman, P. T. & 3 others, Tomlin, C., Mukherjee, S. & Gray, J. W., Oct 1 2017, In : PLoS One. 12, 10, e0186551.

Research output: Contribution to journalComment/debate

CpG island shore methylation regulates caveolin-1 expression in breast cancer

Rao, X., Evans, J., Chae, H., Pilrose, J., Kim, S., Yan, P., Huang, R. L., Lai, H. C., Lin, H., Liu, Y., Miller, D., Rhee, J. K., Huang, Y. W., Gu, F., Gray, J. W., Huang, T. M. & Nephew, K. P., Sep 19 2013, In : Oncogene. 32, 38, p. 4519-4528 10 p.

Research output: Contribution to journalArticle

82 Scopus citations

Cross-platform pathway-based analysis identifies markers of response to the PARP inhibitor olaparib

Daemen, A., Wolf, D. M., Korkola, J. E., Griffith, O. L., Frankum, J. R., Brough, R., Jakkula, L. R., Wang, N. J., Natrajan, R., Reis-Filho, J. S., Lord, C. J., Ashworth, A., Spellman, P. T., Gray, J. W. & Van'T Veer, L. J., Sep 1 2012, In : Breast Cancer Research and Treatment. 135, 2, p. 505-517 13 p.

Research output: Contribution to journalArticle

44 Scopus citations

Crosstalk between Aurora-A and p53: Frequent Deletion or Downregulation of Aurora-A in Tumors from p53 Null Mice

Mao, J. H., Wu, D., Perez-Losada, J., Jiang, T., Li, Q., Neve, R. M., Gray, J. W., Cai, W. W. & Balmain, A., Feb 13 2007, In : Cancer Cell. 11, 2, p. 161-173 13 p.

Research output: Contribution to journalArticle

57 Scopus citations

C-Src modulates estrogen-induced stress and apoptosis in estrogen-deprived breast cancer cells

Fan, P., Griffith, O. L., Agboke, F. A., Anur, P., Zou, X., McDaniel, R. E., Creswell, K., Kim, S. H., Katzenellenbogen, J. A., Gray, J. W. & Jordan, V. C., Jul 15 2013, In : Cancer Research. 73, 14, p. 4510-4520 11 p.

Research output: Contribution to journalArticle

48 Scopus citations

CUL4A induces epithelial-mesenchymal transition and promotes cancer metastasis by regulating ZEB1 expression

Wang, Y., Wen, M., Kwon, Y., Xu, Y., Liu, Y., Zhang, P., He, X., Wang, Q., Huang, Y., Jen, K. Y., Labarge, M. A., You, L., Kogan, S. C., Gray, J. W., Mao, J. H. & Wei, G., Jan 15 2014, In : Cancer Research. 74, 2, p. 520-531 12 p.

Research output: Contribution to journalArticle

142 Scopus citations

Current development of targeted oligonucleotide-based cancer therapies: Perspective on HER2-positive breast cancer treatment

Ngamcherdtrakul, W., Castro, D. J., Gu, S., Morry, J., Reda, M., Gray, J. & Yantasee, W., Apr 1 2016, In : Cancer Treatment Reviews. 45, p. 19-29 11 p.

Research output: Contribution to journalArticle

9 Scopus citations
15 Scopus citations

Cyclic AMP, a nonessential regulator of the cell cycle

Coffino, P., Gray, J. W. & Tomkins, G. M., Jan 1 1975, In : Proceedings of the National Academy of Sciences of the United States of America. 72, 3, p. 878-882 5 p.

Research output: Contribution to journalArticle

Open Access
93 Scopus citations
1 Scopus citations

Cytochemical studies of metaphase chromosomes by flow cytometry

Langlois, R. G., Carrano, A. V., Gray, J. W. & Van Dilla, M. A., Mar 1 1980, In : Chromosoma. 77, 3, p. 229-251 23 p.

Research output: Contribution to journalArticle

62 Scopus citations

Cytochemistry for bromodeoxyuridine/DNA analysis: Stoichiometry and sensitivity

Dolbeare, F., Beisker, W., Pallavicini, M. G., Vanderlaan, M. & Gray, J. W., Nov 1985, In : Cytometry. 6, 6, p. 521-530 10 p.

Research output: Contribution to journalArticle

131 Scopus citations

Cytogenetic analysis by in situ hybridization with fluorescently labeled nucleic acid probes

Pinkel, D., Gray, J. W., Trask, B., van den Engh, G., Fuscoe, J. & van Dekken, H., Dec 1 1986, In : Cold Spring Harbor symposia on quantitative biology. 51, 1, p. 151-157 7 p.

Research output: Contribution to journalArticle

224 Scopus citations

Cytogenetic analysis using quantitative, high-sensitivity, fluorescence hybridization

Pinkel, D., Straume, T. & Gray, J. W., Jan 1 1986, In : Proceedings of the National Academy of Sciences of the United States of America. 83, 9, p. 2934-2938 5 p.

Research output: Contribution to journalArticle

Open Access
2758 Scopus citations

Cytogenetic profiling using fluorescence in situ hybridization (FISH) and comparative genomic hybridization (CGH)

Thompson, C. T. & Gray, J. W., 1993, In : Journal of cellular biochemistry. 53, S17G, p. 139-143 5 p.

Research output: Contribution to journalArticle

20 Scopus citations

Cytokinetic characterization of the response of the KHT tumor to ara-C

Pallavicini, M. G., Folstad, L. J. & Gray, J. W., Jan 1 1980, In : Basic and Applied Histochemistry. 24, 4, 1 p.

Research output: Contribution to journalArticle