• 66579 Citations
  • 112 h-Index
1971 …2020

Research output per year

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Research Output

ARHI is the center of allelic deletion on chromosome 1p31 in ovarian and breast cancers

Peng, H., Xu, F., Pershad, R., Hunt, K. K., Frazier, M. L., Berchuck, A., Gray, J. W., Hogg, D., Bast, R. C. & Yu, Y., May 19 2000, In : International Journal of Cancer. 86, 5, p. 690-694 5 p.

Research output: Contribution to journalArticle

52 Scopus citations

A robust prognostic signature for hormone-positive node-negative breast cancer

Griffith, O. L., Pepin, F., Enache, O. M., Heiser, L. M., Collisson, E. A., Spellman, P. T. & Gray, J. W., Oct 11 2013, In : Genome Medicine. 5, 10, 92.

Research output: Contribution to journalArticle

10 Scopus citations

Array-based comparative genomic hybridization analysis identified cyclin D1 as a target oncogene at 11q13.3 in nasopharyngeal carcinoma

Hui, A. B. Y., Or, Y. Y. Y., Takano, H., Tsang, R. K. Y., To, K. F., Guan, X. Y., Sham, J. S. T., Hung, K. W. K., Lam, C. N. Y., Van Hasselt, C. A., Kuo, W. L., Gray, J. W., Huang, D. P. & Lo, K. W., Sep 15 2005, In : Cancer Research. 65, 18, p. 8125-8133 9 p.

Research output: Contribution to journalArticle

84 Scopus citations

Array comparative genomic hybridization with cyanin cis-platinum-labeled DNAs

Raap, A. K., Van Der Burg, M. J. M., Knijnenburg, J., Meershoek, E., Rosenberg, C., Gray, J. W., Wiegant, J., Hodgson, J. G. & Tanke, H. J., Jul 1 2004, In : BioTechniques. 37, 1, p. 130-134 5 p.

Research output: Contribution to journalArticle

14 Scopus citations

ARTIK-52 induces replication-dependent DNA damage and p53 activation exclusively in cells of prostate and breast cancer origin

Fleyshman, D., Cheney, P., Ströse, A., Mudambi, S., Safina, A., Commane, M., Purmal, A., Morgan, K., Wang, N. J., Gray, J., Spellman, P., Issaeva, N. & Gurova, K., Feb 1 2016, In : Cell Cycle. 15, 3, p. 455-470 16 p.

Research output: Contribution to journalArticle

1 Scopus citations
125 Scopus citations

A sequence-based survey of the complex structural organization of tumor genomes

Raphael, B. J., Volik, S., Yu, P., Wu, C., Huang, G., Linardopoulou, E. V., Trask, B. J., Waldman, F., Costello, J., Pienta, K. J., Mills, G. B., Bajsarowicz, K., Kobayashi, Y., Sridharan, S., Paris, P. L., Tao, Q., Aerni, S. J., Brown, R. P., Bashir, A., Gray, J. W. & 6 others, Cheng, J. F., de Jong, P., Nefedov, M., Ried, T., Padilla-Nash, H. M. & Collins, C. C., Mar 25 2008, In : Genome biology. 9, 3, R59.

Research output: Contribution to journalArticle

31 Scopus citations

Asparagine synthetase as a causal, predictive biomarker for L-asparaginase activity in ovarian cancer cells

Lorenzi, P. L., Reinhold, W. C., Rudelius, M., Gunsior, M., Shankavaram, U., Bussey, K. J., Scherf, U., Eichler, G. S., Martin, S. E., Chin, K., Gray, J. W., Kohn, E. C., Horak, I. D., Von Hoff, D. D., Raffeld, M., Goldsmith, P. K., Caplen, N. J. & Weisntein, J. N., Nov 1 2006, In : Molecular cancer therapeutics. 5, 11, p. 2613-2623 11 p.

Research output: Contribution to journalArticle

68 Scopus citations

Assembly of microarrays for genome-wide measurement of DNA copy number

Snijders, A. M., Nowak, N., Segraves, R., Blackwood, S., Brown, N., Conroy, J., Hamilton, G., Hindle, A. K., Huey, B., Kimura, K., Law, S., Myambo, K., Palmer, J., Ylstra, B., Yue, J. P., Gray, J. W., Jain, A. N., Pinkel, D. & Albertson, D. G., Dec 10 2001, In : Nature genetics. 29, 3, p. 263-264 2 p.

Research output: Contribution to journalArticle

738 Scopus citations

Assessing human germ-cell mutagenesis in the postgenome era: A celebration of the legacy of William Lawson (Bill) Russell

Wyrobek, A. J., Mulvihill, J. J., Wassom, J. S., Malling, H. V., Shelby, M. D., Lewis, S. E., Witt, K. L., Preston, R. J., Perreault, S. D., Allen, J. W., DeMarini, D. M., Woychik, R. P., Bishop, J. B., Anderson, D., Arnheim, N., Boice, J. D., Bridges, B. A., Crow, J. F., Dubrova, Y. E., Eichenlaub-Ritter, U. & 16 others, Erickson, R. P., Fridlyand, J., Gray, J., Hanawalt, P. C., Handel, M. A., Marchetti, F., Mohrenweiser, H. W., Moyzis, R. K., Primig, M., Russell, L. B., Sankaranarayanan, K., Skinner, M. K., Shoubridge, E. A., Taylor, J. A., Trasler, J. M. & Vasicek, T. J., Feb 1 2007, In : Environmental and Molecular Mutagenesis. 48, 2, p. 71-95 25 p.

Research output: Contribution to journalArticle

47 Scopus citations

A systems analysis of the chemosensitivity of breast cancer cells to the polyamine analogue PG-11047

Kuo, W. L., Das, D., Ziyad, S., Bhattacharya, S., Gibb, W. J., Heiser, L. M., Sadanandam, A., Fontenay, G. V., Hu, Z., Wang, N. J., Bayani, N., Feiler, H. S., Neve, R. M., Wyrobek, A. J., Spellman, P. T., Marton, L. J. & Gray, J. W., Dec 14 2009, In : BMC Medicine. 7, 77.

Research output: Contribution to journalArticle

24 Scopus citations

A technical assessment of the utility of reverse phase protein arrays for the study of the functional proteome in non-microdissected human breast cancers

Hennessy, B. T., Lu, Y., Gonzalez-Angulo, A. M., Carey, M. S., Myhre, S., Ju, Z., Davies, M. A., Liu, W., Coombes, K., Meric-Bernstam, F., Bedrosian, I., McGahren, M., Agarwal, R., Zhang, F., Overgaard, J., Alsner, J., Neve, R. M., Kuo, W. L., Gray, J. W., Borresen-Dale, A. L. & 1 others, Mills, G. B., Dec 1 2010, In : Clinical Proteomics. 6, 4, p. 129-151 23 p.

Research output: Contribution to journalArticle

145 Scopus citations

ATM Suppresses SATB1-Induced Malignant Progression in Breast Epithelial Cells

Ordinario, E., Han, H. J., Furuta, S., Heiser, L. M., Jakkula, L. R., Rodier, F., Spellman, P. T., Campisi, J., Gray, J. W., Bissell, M. J., Kohwi, Y. & Kohwi-Shigematsu, T., Dec 10 2012, In : PloS one. 7, 12, e51786.

Research output: Contribution to journalArticle

16 Scopus citations

A t-statistic for objective interpretation of comparative genomic hybridization (CGH) profiles

Moore, D. H., Pallavicini, M., Cher, M. L. & Gray, J. W., Jul 1 1997, In : Cytometry. 28, 3, p. 183-190 8 p.

Research output: Contribution to journalArticle

49 Scopus citations

Atypical PKCι contributes to poor prognosis through loss of apical-basal polarity and Cyclin E overexpression in ovarian cancer

Eder, A. M., Sui, X., Rosen, D. G., Nolden, L. K., Cheng, K. W., Lahad, J. P., Kango-Singh, M., Lu, K. H., Warneke, C. L., Atkinson, E. M., Bedrosian, I., Keyomarsi, K., Kuo, W. L., Gray, J. W., Yin, J. C. P., Liu, J., Halder, G. & Mills, G. B., Aug 30 2005, In : Proceedings of the National Academy of Sciences of the United States of America. 102, 35, p. 12519-12524 6 p.

Research output: Contribution to journalArticle

194 Scopus citations

Authors' reply to Dr. Ornstein

Langlois, R. G., Gray, J. & Kerker, M., 1983, In : Cytometry. 3, 6, p. 460 1 p.

Research output: Contribution to journalLetter

Automated detection of chromosome aberration using color information

Chen, C. H., Wang, Y., Mitra, S. K. & Gray, J., Mar 1 1990, In : Proceedings of SPIE - The International Society for Optical Engineering. 1192, p. 339-343 5 p.

Research output: Contribution to journalArticle

4 Scopus citations

A workflow for visualizing human cancer biopsies using large-format electron microscopy

Riesterer, J. L., López, C. S., Stempinski, E. S., Williams, M., Loftis, K., Stoltz, K., Thibault, G., Lanicault, C., Williams, T. & Gray, J. W., 2020, Methods in Cell Biology. Tran, P. (ed.). Academic Press Inc., p. 163-181 19 p. (Methods in Cell Biology; vol. 158).

Research output: Chapter in Book/Report/Conference proceedingChapter

Basal subtype and MAPK/ERK kinase (MEK)-phosphoinositide 3-kinase feedback signaling determine susceptibility of breast cancer cells to MEK inhibition

Mirzoeva, O. K., Das, D., Heiser, L. M., Bhattacharya, S., Siwak, D., Gendelman, R., Bayani, N., Wang, N. J., Neve, R. M., Guan, Y., Hu, Z., Knight, Z., Feiler, H. S., Gascard, P., Parvin, B., Spellman, P. T., Shokat, K. M., Wyrobek, A. J., Bissell, M. J., McCormick, F. & 4 others, Kuo, W. L., Mills, G. B., Gray, J. W. & Korn, W. M., Jan 15 2009, In : Cancer Research. 69, 2, p. 565-572 8 p.

Research output: Contribution to journalArticle

271 Scopus citations

Bayesian Inference of Signaling Network Topology in a Cancer Cell Line

Hill, S. M., Lu, Y., Molina, J., Heiser, L. M., Spellman, P. T., Speed, T. P., Gray, J. W., Mills, G. B. & Mukherjee, S., Nov 1 2012, In : Bioinformatics. 28, 21, p. 2804-2810 7 p.

Research output: Contribution to journalArticle

63 Scopus citations

Bayesian network inference modeling identifies TRIB1 as a novel regulator of cell-cycle progression and survival in cancer cells

Gendelman, R., Xing, H., Mirzoeva, O. K., Sarde, P., Curtis, C., Feiler, H., McDonagh, P., Gray, J., Khalil, I. & Korn, W. M., 2017, In : Cancer Research. 77, 7, p. 1575-1585 11 p.

Research output: Contribution to journalArticle

21 Scopus citations

Biallelic inactivation of the thyroid hormone receptor β1 gene in early stage breast cancer

Li, Z., Meng, Z. H., Chandrasekaran, R., Kuo, W. L., Collins, C. C., Gray, J. W. & Dairkee, S. H., Apr 1 2002, In : Cancer Research. 62, 7, p. 1939-1943 5 p.

Research output: Contribution to journalArticle

75 Scopus citations

Bivariate flout cytometric analysis of murine intestinal epithelial cells for cytokinetic studies

Pallavicini, M. G., Ng, C. R. & Gray, J. W., Jan 1984, In : Cytometry. 5, 1, p. 55-62 8 p.

Research output: Contribution to journalArticle

4 Scopus citations

Breast cancer genomes - form and function

Korkola, J. & Gray, J. W., Feb 1 2010, In : Current Opinion in Genetics and Development. 20, 1, p. 4-14 11 p.

Research output: Contribution to journalReview article

37 Scopus citations

Breast cancer histopathology image analysis pipeline for tumor purity estimation

Azimi, V., Chang, Y. H., Thibault, G., Smith, J., Tsujikawa, T., Kukull, B., Jensen, B., Corless, C., Margolin, A. & Gray, J., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 1137-1140 4 p. 7950717

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Breast tumor copy number aberration phenotypes and genomic instability

Fridlyand, J., Snijders, A. M., Ylstra, B., Li, H., Olshen, A., Segraves, R., Dairkee, S., Tokuyasu, T., Ljung, B. M., Jain, A. N., McLennan, J., Ziegler, J., Chin, K., Devries, S., Feiler, H., Gray, J. W., Waldman, F., Pinkel, D. & Albertson, D. G., Apr 18 2006, In : BMC cancer. 6, 96.

Research output: Contribution to journalArticle

226 Scopus citations

BRIT1 regulates early DNA damage response, chromosomal integrity, and cancer

Rai, R., Dai, H., Multani, A. S., Li, K., Chin, K., Gray, J., Lahad, J. P., Liang, J., Mills, G. B., Meric-Bernstam, F. & Lin, S. Y., Aug 1 2006, In : Cancer Cell. 10, 2, p. 145-157 13 p.

Research output: Contribution to journalArticle

119 Scopus citations

Cancer: Genomics of metastasis

Gray, J., Apr 15 2010, In : Nature. 464, 7291, p. 989-990 2 p.

Research output: Contribution to journalShort survey

10 Scopus citations

Cancer-associated gene abnormalities and chemosensitivity

Sakamoto, M., Umayahara, K., Sakamoto, H., Kawasaki, K., Suehiro, Y., Kunugi, T., Akiya, T., Iwabuchi, H., Sakunaga, H., Muroya, T., Kikuchi, Y., Sugishita, T., Tenjin, Y., Gray, J. W. & Tanaka, T., Oct 1998, In : Gan to kagaku ryoho. Cancer & chemotherapy. 25, 12, p. 1819-1831 13 p.

Research output: Contribution to journalReview article

4 Scopus citations

Cancer Genomics

Spellman, P. T., Costello, J. F. & Gray, J. W., Dec 1 2008, The Molecular Basis of Cancer. Elsevier Inc., p. 267-282 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cationic polymer modified mesoporous silica nanoparticles for targeted siRNA delivery to HER2+ breast cancer

Ngamcherdtrakul, W., Morry, J., Gu, S., Castro, D. J., Goodyear, S. M., Sangvanich, T., Reda, M. M., Lee, R., Mihelic, S. A., Beckman, B. L., Hu, Z., Gray, J. W. & Yantasee, W., May 13 2015, In : Advanced Functional Materials. 25, 18, p. 2646-2659 14 p.

Research output: Contribution to journalArticle

95 Scopus citations

Causal network inference using biochemical kinetics

Oates, C. J., Dondelinger, F., Bayani, N., Korkola, J., Gray, J. W. & Mukherjee, S., Sep 1 2014, In : Bioinformatics. 30, 17, p. i468-i474

Research output: Contribution to journalArticle

29 Scopus citations

CCR5 Governs DNA damage repair and breast cancer stem cell expansion

Jiao, X., Velasco-Velazquez, M. A., Wang, M., Li, Z., Rui, H., Peck, A. R., Korkola, J. E., Chen, X., Xu, S., DuHadaway, J. B., Guerrero-Rodriguez, S., Addya, S., Sicoli, D., Mu, Z., Zhang, G., Stucky, A., Zhang, X., Cristofanilli, M., Fatatis, A., Gray, J. W. & 3 others, Zhong, J. F., Prendergast, G. C. & Pestell, R. G., Apr 1 2018, In : Cancer Research. 78, 7, p. 1657-1671 15 p.

Research output: Contribution to journalArticle

24 Scopus citations

Cell cycle analysis from computer synthesis of deoxyribonucleic acid histograms

Gray, J. W., Jan 1 1974, In : Journal of Histochemistry and Cytochemistry. 22, 7, p. 642-650 9 p.

Research output: Contribution to journalArticle

Open Access
44 Scopus citations

CELL‐CYCLE ANALYSIS OF PERTURBED CELL POPULATIONS: COMPUTER SIMULATION OF SEQUENTIAL DNA DISTRIBUTIONS

Gray, J., 1976, In : Cell Proliferation. 9, 6, p. 499-516 18 p.

Research output: Contribution to journalArticle

78 Scopus citations

Cell‐Cycle Analysis Using A Monoclonal Antibody to Brdurd

Dean, P. N., Dolbeare, F., Gratzner, H., Rice, G. C. & Gray, J., 1984, In : Cell Proliferation. 17, 4, p. 427-436 10 p.

Research output: Contribution to journalArticle

182 Scopus citations

Cell cycle analysis using flow cytometry

Gray, J. W., Dolbeare, F., Pallavicini, M. G., Beisker, W. & Waldman, F., Jan 1 1986, In : International Journal of Radiation Biology. 49, 2, p. 237-255 19 p.

Research output: Contribution to journalArticle

46 Scopus citations

Cell cycle analysis using numerical simulation of bivariate DNA/bromodeoxyuridine distributions

Yanagisawa, M., Dolbeare, F., Todoroki, T. & Gray, J. W., Nov 1985, In : Cytometry. 6, 6, p. 550-562 13 p.

Research output: Contribution to journalArticle

37 Scopus citations

Cell fusion potentiates tumor heterogeneity and reveals circulating hybrid cells that correlate with stage and survival

Gast, C. E., Silk, A. D., Zarour, L., Riegler, L., Burkhart, J. G., Gustafson, K. T., Parappilly, M. S., Roh-Johnson, M., Goodman, J. R., Olson, B., Schmidt, M., Swain, J. R., Davies, P., Shasthri, V., Iizuka, S., Flynn, P., Watson, S., Korkola, J., Courtneidge, S., Fischer, J. & 8 others, Jaboin, J., Billingsley, K., Lopez, C., Burchard, J., Gray, J., Coussens, L., Sheppard, B. & Wong, M., Sep 12 2018, In : Science advances. 4, 9, eaat7828.

Research output: Contribution to journalArticle

32 Scopus citations

Cell kinetics of rat 9L brain tumors determined by double labeling with iodo- and bromodeoxyuridine

Asai, A., Shibui, S., Barker, M., Vanderlaan, M., Gray, J. W. & Hoshino, T., Jan 1 1990, In : Journal of neurosurgery. 73, 2, p. 254-258 5 p.

Research output: Contribution to journalArticle

27 Scopus citations

Cellular effect of high doses of silica-coated quantum dot profiled with high throughput gene expression analysis and high content cellomics measurements

Zhang, T., Stilwell, J. L., Gerion, D., Ding, L., Elboudwarej, O., Cooke, P. A., Gray, J. W., Alivisatos, A. P. & Chen, F. F., Apr 1 2006, In : Nano Letters. 6, 4, p. 800-808 9 p.

Research output: Contribution to journalArticle

301 Scopus citations

Centromeric index measurement by slit‐scan flow cytometry

Lucas, J. N., Gray, J. W., Peters, D. C. & Van Dilla, M. A., Sep 1983, In : Cytometry. 4, 2, p. 109-116 8 p.

Research output: Contribution to journalArticle

25 Scopus citations

Centromeric index versus DNA content flow karyotypes of human chromosomes measured by means of slit‐scan flow cytometry

Lucas, J. N. & Gray, J. W., May 1987, In : Cytometry. 8, 3, p. 273-279 7 p.

Research output: Contribution to journalArticle

24 Scopus citations

Changes in L-ornithine decarboxylase activity during the cell cycle

Heby, O., Gray, J. W., Lindl, P. A., Marton, L. J. & Wilson, C. B., Jul 12 1976, In : Biochemical and Biophysical Research Communications. 71, 1, p. 99-105 7 p.

Research output: Contribution to journalArticle

83 Scopus citations

Chapter 21 Using Monoclonal Antibodies in Bromodeoxyuridine—DNA Analysis

Dolbeare, F., Kuo, W. L., Beisker, W., Vanderlaan, M. & Gray, J. W., Jan 1 1990, In : Methods in cell biology. 33, C, p. 207-216 10 p.

Research output: Contribution to journalArticle

32 Scopus citations

Characterization and organization of DNA sequences adjacent to the human telomere associated repeat (TTAGGG)n

Weber, B., Collins, C., Robbins, C., Magenis, R. E., Delaney, A. D., Gray, J. W. & Hayden, M. R., Jun 11 1990, In : Nucleic acids research. 18, 11, p. 3353-3361 9 p.

Research output: Contribution to journalArticle

44 Scopus citations

Characterization of a naturally occurring breast cancer subset enriched in epithelial-to-mesenchymal transition and stem cell characteristics

Hennessy, B. T., Gonzalez-Angulo, A. M., Stemke-Hale, K., Gilcrease, M. Z., Krishnamurthy, S., Lee, J. S., Fridlyand, J., Sahin, A., Agarwal, R., Joy, C., Liu, W., Stivers, D., Baggerly, K., Carey, M., Lluch, A., Monteagudo, C., He, X., Weigman, V., Fan, C., Palazzo, J. & 7 others, Hortobagyi, G. N., Nolden, L. K., Wang, N. J., Valero, V., Gray, J. W., Perou, C. M. & Mills, G. B., May 15 2009, In : Cancer Research. 69, 10, p. 4116-4124 9 p.

Research output: Contribution to journalArticle

583 Scopus citations

Characterization of somatic cell hybrids by bivariate flow karyotyping and fluorescence in situ hybridization

Trask, B. J., van den Engh, G., Christensen, M., Massa, H. F., Gray, J. W. & Van Dilla, M., Mar 1 1991, In : Somatic Cell and Molecular Genetics. 17, 2, p. 117-136 20 p.

Research output: Contribution to journalArticle

38 Scopus citations

Characterizing the immune microenvironment in high-risk ductal carcinoma in situ of the breast

Campbell, M. J., Baehner, F., O’Meara, T., Ojukwu, E., Han, B., Mukhtar, R., Tandon, V., Endicott, M., Zhu, Z., Wong, J., Krings, G., Au, A., Gray, J. & Esserman, L., Oct 26 2016, (Accepted/In press) In : Breast Cancer Research and Treatment. p. 1-12 12 p.

Research output: Contribution to journalArticle

33 Scopus citations

Chemotherapy response and recurrence-free survival in Neoadjuvant breast cancer depends on biomarker profiles: Results from the I-SPY 1 TRIAL (CALGB 150007/150012; ACRIN 6657)

Esserman, L. J., Berry, D. A., Cheang, M. C. U., Yau, C., Perou, C. M., Carey, L., De Michele, A., Gray, J. W., Conway-Dorsey, K., Lenburg, M. E., Buxton, M. B., Davis, S. E., Van't Veer, L. J., Hudis, C., Chin, K., Wolf, D., Krontiras, H., Montgomery, L., Tripathy, D., Lehman, C. & 14 others, Liu, M. C., Olopade, O. I., Rugo, H. S., Carpenter, J. T., Livasy, C., Dressler, L., Chhieng, D., Singh, B., Mies, C., Rabban, J., Chen, Y. Y., Giri, D., Au, A. & Hylton, N., Apr 1 2012, In : Breast Cancer Research and Treatment. 132, 3, p. 1049-1062 14 p.

Research output: Contribution to journalArticle

197 Scopus citations