Jayashree Kalpathy-Cramer

Adjunct Assistant Professor

  • 1793 Citations
  • 16 h-Index
19932018

Research Output 1993 2018

  • 1793 Citations
  • 16 h-Index
  • 65 Article
  • 44 Conference contribution
  • 1 Chapter
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Conference contribution
2017
2 Citations

Making sense of large data sets without annotations: Analyzing age-related correlations from lung CT scans

Dicente Cid, Y., Mamonov, A., Beers, A., Thomas, A., Kovalev, V., Kalpathy-Cramer, J. & Müller, H. 2017 Medical Imaging 2017: Imaging Informatics for Healthcare, Research, and Applications. SPIE, Vol. 10138, 1013809

Research output: ResearchConference contribution

Computerized tomography
annotations
lungs
Lung
Datasets
2016

Toward a severity index for ROP: An unsupervised approach

Tian, P., Ataer-Cansizoglu, E., Kalpathy-Cramer, J., Ostmo, S., Jonas, K., Chan, R. V. P., Campbell, J. P., Chiang, M. F. & Erdogmus, D. Oct 13 2016 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October, p. 1312-1315 4 p. 7590948

Research output: ResearchConference contribution

Retinopathy of Prematurity
Low Birth Weight Infant
Blindness
Learning
Datasets
2015
3 Citations

A GMM-based feature extraction technique for the automated diagnosis of Retinopathy of Prematurity

Bolon-Canedo, V., Ataer-Cansizoglu, E., Erdogmus, D., Kalpathy-Cramer, J. & Chiang, M. F. Jul 21 2015 Proceedings - International Symposium on Biomedical Imaging. IEEE Computer Society, Vol. 2015-July, p. 1498-1501 4 p. 7164161

Research output: ResearchConference contribution

Retinopathy of Prematurity
Feature extraction
Statistics
Blindness
Eye Diseases
2 Citations

Analysis of shape assumptions in 3D reconstruction of retina from multiple fundus images

Ataer-Cansizoglu, E., Taguchi, Y., Kalpathy-Cramer, J., Chiang, M. F. & Erdogmus, D. Jul 21 2015 Proceedings - International Symposium on Biomedical Imaging. IEEE Computer Society, Vol. 2015-July, p. 1502-1505 4 p. 7164162

Research output: ResearchConference contribution

Least-Squares Analysis
Retina
Cameras
6 Citations

Bayesian personalization of brain tumor growth model

Lê, M., Delingette, H., Kalpathy-Cramer, J., Gerstner, E. R., Batchelor, T., Unkelbach, J. & Ayache, N. 2015 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 9350, p. 424-432 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9350)

Research output: ResearchConference contribution

Brain Tumor
Tumor Growth
Personalization
Growth Model
Tumors
1 Citations

Upsampling dynamic contrast enhanced MRI

Jafari-Khouzani, K., Gerstner, E., Rosen, B. & Kalpathy-Cramer, J. Jul 21 2015 Proceedings - International Symposium on Biomedical Imaging. IEEE Computer Society, Vol. 2015-July, p. 1032-1035 4 p. 7164047

Research output: ResearchConference contribution

Magnetic resonance imaging
Imaging techniques
Magnetic Resonance Imaging
Magnetic resonance
Brain
2013

Developing a survey to assess factors that contribute to physician involvement in clinical research

Taliercio, V., Logan, J. R., Kalpathy-Cramer, J. & Oteroa, P. 2013 Studies in Health Technology and Informatics. 1-2 ed. Vol. 192, p. 107-111 5 p.

Research output: ResearchConference contribution

Physicians
Research
Surveys and Questionnaires
Informatics
Economic Development
8 Citations

Overview of the ImageCLEF 2013 medical tasks

De Herrera, A. G. S., Kalpathy-Cramer, J., Fushman, D. D., Antani, S. & Müller, H. 2013 CLEF 2013 - Working Notes for CLEF 2013 Conference. CEUR-WS, Vol. 1179

Research output: ResearchConference contribution

2012
23 Citations

Creating a classification of image types in the medical literature for visual categorization

M̈uller, H., Kalpathy-Cramer, J., Demner-Fushman, D. & Antani, S. 2012 Proceedings of SPIE - The International Society for Optical Engineering. Vol. 8425, 83190P

Research output: ResearchConference contribution

Categorization
Vision
Image retrieval
Medicine
retrieval
10 Citations

Level sets for retinal vasculature segmentation using seeds from ridges and edges from phase maps

Dizdaro, B., Ataer-Cansizoglu, E., Kalpathy-Cramer, J., Keck, K., Chiang, M. F. & Erdogmus, D. 2012 IEEE International Workshop on Machine Learning for Signal Processing, MLSP. 6349730

Research output: ResearchConference contribution

Edge detection
Seed
Sampling
6 Citations

Observer and feature analysis on diagnosis of retinopathy of prematurity

Ataer-Cansizoglu, E., You, S., Kalpathy-Cramer, J., Keck, K., Chiang, M. F. & Erdogmus, D. 2012 IEEE International Workshop on Machine Learning for Signal Processing, MLSP. 6349809

Research output: ResearchConference contribution

Labels
Experiments
13 Citations

Overview of the ImageCLEF 2012 medical image retrieval and classiFIcation tasks

Müller, H., De Herrera, A. G. S., Kalpathy-Cramer, J., Fushman, D. D., Antani, S. & Eggel, I. 2012 CLEF 2012 - Working Notes for CLEF 2012 Conference. CEUR-WS, Vol. 1178

Research output: ResearchConference contribution

Image classification
Image retrieval
3 Citations

Retinal vasculature segmentation using principal spanning forests

Bas, E., Ataer-Cansizoglu, E., Erdogmus, D. & Kalpathy-Cramer, J. 2012 Proceedings - International Symposium on Biomedical Imaging. p. 1792-1795 4 p. 6235930

Research output: ResearchConference contribution

Electric network analysis
Interpolation
Sampling
Forests
Spatial Analysis
2011
1 Citations

Medical multimedia analysis and retrieval

Cao, Y., Kalpathy-Cramer, J. & Ünay, D. 2011 MM'11 - Proceedings of the 2011 ACM Multimedia Conference and Co-Located Workshops. p. 617-618 2 p.

Research output: ResearchConference contribution

Digital storage
Data mining
Education
Sensors
Processing
13 Citations

Overview of the CLEF 2011 medical image classification and retrieval tasks

Kalpathy-Cramer, J., Muller, H., Bedrick, S., Eggel, I., De Herrera, A. G. S. & Tsikrika, T. 2011 CLEF 2011 - Working Notes for CLEF 2011 Conference. CEUR-WS, Vol. 1177

Research output: ResearchConference contribution

Image classification
Image retrieval
Fusion reactions

Principal curve based semi-automatic segmentation of organs in 3D-CT

You, S., Bas, E., Ataer-Cansizoglu, E., Kalpathy-Cramer, J. & Erdogmus, D. 2011 Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. p. 6220-6223 4 p. 6091536

Research output: ResearchConference contribution

Radiotherapy
Tumors
Radiation
Neoplasms
Computerized tomography
7 Citations

Principal curved based retinal vessel segmentation towards diagnosis of retinal diseases

You, S., Bas, E., Erdogmus, D. & Kalpathy-Cramer, J. 2011 Proceedings - 2011 1st IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2011. p. 331-337 7 p. 6061462

Research output: ResearchConference contribution

Retinal Diseases
Retinal Vessels
Interpolation
Retinopathy of Prematurity
Macular Degeneration
2010
1 Citations

A novel application of principal surfaces to segmentation in 4D-CT for radiation treatment planning

You, S., Ataer-Cansizoglu, E., Erdogmus, D., Tanyi, J. & Kalpathy-Cramer, J. 2010 Proceedings - 9th International Conference on Machine Learning and Applications, ICMLA 2010. p. 758-763 6 p. 5708938

Research output: ResearchConference contribution

Tumors
Radiation
Planning
Radiotherapy
Computerized tomography
1 Citations

Improving retrieval using external annotations: OHSU at imageCLEF 2010

Bedrick, S. & Kalpathy-Cramer, J. 2010 CLEF 2010 - Working Notes for CLEF 2010 Conference. CEUR-WS, Vol. 1176

Research output: ResearchConference contribution

Nonbibliographic retrieval systems
Medicine
Experiments
16 Citations

Multimodal medical image retrieval: Image categorization to improve search precision

Kalpathy-Cramer, J. & Hersh, W. 2010 MIR 2010 - Proceedings of the 2010 ACM SIGMM International Conference on Multimedia Information Retrieval. p. 165-173 9 p.

Research output: ResearchConference contribution

Image retrieval
Labels
Imaging techniques
Pathology
Search engines
40 Citations

Overview of the CLEF 2009 medical image retrieval track

Müller, H., Kalpathy-Cramer, J., Eggel, I., Bedrick, S., Radhouani, S., Bakke, B., Kahn, C. E. & Hersh, W. 2010 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 6242 LNCS, p. 72-84 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6242 LNCS)

Research output: ResearchConference contribution

Image Retrieval
Medical Image
Lung
Radiology
Image retrieval
11 Citations

Overview of the CLEF 2010 medical image retrieval track

Müller, H., Kalpathy-Cramer, J., Eggel, I., Bedrick, S., Reisetter, J., Kahn, C. E. & Hersh, W. 2010 CLEF 2010 - Working Notes for CLEF 2010 Conference. CEUR-WS, Vol. 1176

Research output: ResearchConference contribution

Radiology
Image retrieval
9 Citations

Overview of the first workshop on medical content-based retrieval for clinical decision support at MICCAI 2009

Müller, H., Kalpathy-cramer, J., Caputo, B., Syeda-Mahmood, T. & Wang, F. 2010 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 5853 LNCS, p. 1-17 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5853 LNCS)

Research output: ResearchConference contribution

Content-based Retrieval
Image Retrieval
Medical Image
Decision Support
Computing

Retrieving similar cases from the medical literature - The ImageCLEF experience

Kalpathy-Cramer, J., Bedrick, S., Radhouani, S., Hersh, W., Eggel, I., Kahn, C. E. & Müller, H. 2010 Studies in Health Technology and Informatics. PART 1 ed. Vol. 160, p. 1189-1193 5 p.

Research output: ResearchConference contribution

Research Personnel
Image retrieval
Search Engine
Internet
Databases
2 Citations

The ImageCLEF medical retrieval task at ICPR 2010 information fusion

Müller, H. & Kalpathy-Cramer, J. 2010 Proceedings - International Conference on Pattern Recognition. p. 3284-3287 4 p. 5597149

Research output: ResearchConference contribution

Information fusion
Image retrieval
Content based retrieval
Computer vision
Availability
10 Citations

The ImageCLEF medical retrieval task at ICPR 2010 - Information fusion to combine visual and textual information

Müller, H. & Kalpathy-Cramer, J. 2010 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 6388 LNCS, p. 99-108 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6388 LNCS)

Research output: ResearchConference contribution

Information Fusion
Retrieval
Vision
Information fusion
Image retrieval
4 Citations

Using media fusion and domain dimensions to improve precision in medical image retrieval

Radhouani, S., Kalpathy-Cramer, J., Bedrick, S., Bakke, B. & Hersh, W. 2010 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 6242 LNCS, p. 223-230 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6242 LNCS)

Research output: ResearchConference contribution

Image Retrieval
Medical Image
Fusion
Vision
Image retrieval
2009
7 Citations

Comparing the quality of accessing the medical literature using content? Based visual and textual information retrieval

Müller, H., Kalpathy-Cramer, J., Kahn, C. E. & Hersh, W. 2009 Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 7264, 726405

Research output: ResearchConference contribution

Image retrieval
Information retrieval
Information Storage and Retrieval
Datasets
information retrieval
1 Citations

Multimodal medical image retrieval improving precision at image CLEF 2009

Radhouani, S., Kalpathy-Cramer, J., Bedrick, S., Bakke, B. & Hersh, W. 2009 CLEF 2009 - Working Notes for CLEF 2009 Workshop, co-located with the 13th European Conference on Digital Libraries, ECDL 2009. CEUR-WS, Vol. 1175

Research output: ResearchConference contribution

Image retrieval
Pathology
Semantics
Health
3 Citations

Multimodal medical image retrieval OHSU at imageCLEF 2008

Kalpathy-Cramer, J., Bedrick, S., Hatt, W. & Hersh, W. 2009 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 5706 LNCS, p. 744-751 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5706 LNCS)

Research output: ResearchConference contribution

Image Retrieval
Medical Image
Ruby
Image retrieval
Image acquisition
13 Citations

Overview of the CLEF 2009 medical image retrieval track

Müller, H., Kalpathy-Cramer, J., Eggel, I., Bedrick, S., Radhouani, S., Bakke, B., Kahn, C. E. & Hersh, W. 2009 CLEF 2009 - Working Notes for CLEF 2009 Workshop, co-located with the 13th European Conference on Digital Libraries, ECDL 2009. CEUR-WS, Vol. 1175

Research output: ResearchConference contribution

Radiology
Image retrieval
Feedback
Imaging techniques
Industry
24 Citations

Overview of the ImageCLEFmed 2008 medical image retrieval task

Müller, H., Kalpathy-Cramer, J., Kahn, C. E., Hatt, W., Bedrick, S. & Hersh, W. 2009 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 5706 LNCS, p. 512-522 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5706 LNCS)

Research output: ResearchConference contribution

Image Retrieval
Medical Image
Image retrieval
Semantics
Vision
1 Citations

Robust segmentation using non-parametric snakes with multiple cues for applications in radiation oncology

Kalpathy-Cramer, J., Ozertem, U., Hersh, W., Fuss, M. & Erdogmus, D. 2009 Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 7259, 72594S

Research output: ResearchConference contribution

snakes
cues
tumors
radiation
Radiation Oncology
2008
5 Citations

Medical image retrieval and automatic annotation: OHSU at ImageCLEF 2007

Kalpathy-Cramer, J. & Hersh, W. 2008 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 5152 LNCS, p. 623-630 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5152 LNCS)

Research output: ResearchConference contribution

Image Retrieval
Medical Image
Annotation
Image retrieval
Modality
1 Citations

Multimodal medical image retrieval: OHSU at ImageCLEF 2008

Kalpathy-Cramer, J., Bedrick, S., Hatt, W. & Hersh, W. 2008 CLEF 2001 - Working Notes for CLEF 2001 Workshop, co-located with the 5th European Conference on Digital Libraries, ECDL 2001. CEUR-WS, Vol. 1174

Research output: ResearchConference contribution

Ruby
Image retrieval
Image acquisition
Search engines
Rails
41 Citations

Overview of the ImageCLEFmed 2007 medical retrieval and medical annotation tasks

Müller, H., Deselaers, T., Deserno, T. M., Kalpathy-Cramer, J., Kim, E. & Hersh, W. 2008 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 5152 LNCS, p. 472-491 20 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5152 LNCS)

Research output: ResearchConference contribution

Medical Image
Annotation
Retrieval
Hierarchy
Hierarchical Classification
1 Citations

Overview of the ImageCLEFmed 2008 medical image retrieval task

Müller, H., Kalpathy-Cramer, J., Kahn, C. E., Hatt, W., Bedrick, S. & Hersh, W. 2008 CLEF 2001 - Working Notes for CLEF 2001 Workshop, co-located with the 5th European Conference on Digital Libraries, ECDL 2001. CEUR-WS, Vol. 1174

Research output: ResearchConference contribution

Image retrieval
Semantics
HTML
Radiology
1 Citations

Semi-supervised segmentation using non-parametric snakes for 3D-CT applications in radiation oncology

Kalpathy-Cramer, J., Ozertem, U., Hersh, W., Fuss, M. & Erdogmus, D. 2008 Proceedings of the 2008 IEEE Workshop on Machine Learning for Signal Processing, MLSP 2008. p. 109-114 6 p. 4685464

Research output: ResearchConference contribution

Oncology
Tumors
Radiation
Computerized tomography
Radiotherapy
6 Citations

Using medline queries to generate image retrieval tasks for benchmarking

Müller, H., Kalpathy-Cramer, J., Hersh, W. & Geissbuhler, A. 2008 Studies in Health Technology and Informatics. Vol. 136, p. 523-528 6 p.

Research output: ResearchConference contribution

Benchmarking
Research
Image retrieval
Computer Communication Networks
Information Storage and Retrieval
2007
20 Citations

Automatic image modality based classification and annotation to improve medical image retrieval

Kalpathy-Cramer, J. & Hersh, W. 2007 Studies in Health Technology and Informatics. Vol. 129, p. 1334-1338 5 p.

Research output: ResearchConference contribution

Image retrieval
Classifiers
Color
Teaching
Medicine
12 Citations

Medical image retrieval and automated annotation: OHSU at ImageCLEF 2006

Hersh, W., Kalpathy-Cramer, J. & Jensen, J. 2007 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 4730 LNCS, p. 660-669 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4730 LNCS)

Research output: ResearchConference contribution

Image Retrieval
Medical Image
Annotation
Retrieval
Data fusion
1 Citations

Medical image retrieval and automatic annotation: OHSU at ImageCLEF 2007

Kalpathy-Cramer, J. & Hersh, W. 2007 CLEF 2007 - Working Notes for CLEF 2007 Workshop, co-located with the 11th European Conference on Digital Libraries, ECDL 2007. CEUR-WS, Vol. 1173

Research output: ResearchConference contribution

Image retrieval
Ruby
Image acquisition
Search engines
Learning systems
29 Citations

Overview of the ImageCLEF 2007 medical retrieval and annotation tasks

Müller, H., Deselaers, T., Kim, E., Kalpathy-Cramer, J., Deserno, T. M. & Hersh, W. 2007 CLEF 2007 - Working Notes for CLEF 2007 Workshop, co-located with the 11th European Conference on Digital Libraries, ECDL 2007. CEUR-WS, Vol. 1173

Research output: ResearchConference contribution

Image retrieval
2006
2 Citations

Medical image retrieval and automated annotation: OHSU at ImageCLEF 2006

Hersh, W., Kalpathy-Cramer, J. & Jensen, J. 2006 CLEF 2005 - Working Notes for CLEF 2005 Workshop, co-located with the 9th European Conference on Digital Libraries, ECDL 2005. CEUR-WS, Vol. 1172

Research output: ResearchConference contribution

Data fusion
Image retrieval
Health