Jayashree Kalpathy-Cramer

Adjunct Assistant Professor

  • 1793 Citations
  • 16 h-Index
19932018

Research Output 1993 2018

  • 1793 Citations
  • 16 h-Index
  • 65 Article
  • 44 Conference contribution
  • 1 Chapter
2018
1 Citations

Multisite concordance of apparent diffusion coefficient measurements across the NCI quantitative imaging network

Newitt, D. C. , Malyarenko, D. , Chenevert, T. L. , Quarles, C. C. , Bell, L. , Fedorov, A. , Fennessy, F. , Jacobs, M. A. , Solaiyappan, M. , Hectors, S. , Taouli, B. , Muzi, M. , Kinahan, P. E. , Schmainda, K. M. , Prah, M. A. , Taber, E. N. , Kroenke, C. , Huang, W. , Arlinghaus, L. R. , Yankeelov, T. E. & 9 others Cao, Y., Aryal, M., Yen, Y. F., Kalpathy-Cramer, J., Shukla-Dave, A., Fung, M., Liang, J., Boss, M. & Hylton, N. 2018 In : Journal of Medical Imaging. 5, 1, 011003

Research output: Research - peer-reviewArticle

Diffusion Magnetic Resonance Imaging
Breast
Software
Biomarkers
Medicine
2017

Accuracy, repeatability, and interplatform reproducibility of T1 quantification methods used for DCE-MRI: Results from a multicenter phantom study

Bane, O. , Hectors, S. J. , Wagner, M. , Arlinghaus, L. L. , Aryal, M. P. , Cao, Y. , Chenevert, T. L. , Fennessy, F. , Huang, W. , Hylton, N. M. , Kalpathy-Cramer, J. , Keenan, K. E. , Malyarenko, D. I. , Mulkern, R. V. , Newitt, D. C. , Russek, S. E. , Stupic, K. F. , Tudorica, A. , Wilmes, L. J. , Yankeelov, T. E. & 3 others Yen, Y. F., Boss, M. A. & Taouli, B. 2017 (Accepted/In press) In : Magnetic Resonance in Medicine.

Research output: Research - peer-reviewArticle

Multicenter Studies
Protons
Linear Models
In Vitro Techniques

A Multi-Institutional Comparison of Dynamic Contrast-Enhanced Magnetic Resonance Imaging Parameter Calculations

Ger, R. B. , Mohamed, A. S. R. , Awan, M. J. , Ding, Y. , Li, K. , Fave, X. J. , Beers, A. L. , Driscoll, B. , Elhalawani, H. , Hormuth, D. A. , Houdt, P. J. V. , He, R. , Zhou, S. , Mathieu, K. B. , Li, H. , Coolens, C. , Chung, C. , Bankson, J. A. , Huang, W. , Wang, J. & 12 others Sandulache, V. C., Lai, S. Y., Howell, R. M., Stafford, R. J., Yankeelov, T. E., Heide, U. A. V. D., Frank, S. J., Barboriak, D. P., Hazle, J. D., Court, L. E., Kalpathy-Cramer, J. & Fuller, C. D. Dec 1 2017 In : Scientific Reports. 7, 1, 11185

Research output: Research - peer-reviewArticle

Magnetic Resonance Imaging
Noise
Pharmacokinetics
Chemoradiotherapy
Tumor Burden
2 Citations

Making sense of large data sets without annotations: Analyzing age-related correlations from lung CT scans

Dicente Cid, Y., Mamonov, A., Beers, A., Thomas, A., Kovalev, V., Kalpathy-Cramer, J. & Müller, H. 2017 Medical Imaging 2017: Imaging Informatics for Healthcare, Research, and Applications. SPIE, Vol. 10138, 1013809

Research output: ResearchConference contribution

Computerized tomography
annotations
lungs
Lung
Datasets

Matched computed tomography segmentation and demographic data for oropharyngeal cancer radiomics challenges

Elhalawani, H. , Mohamed, A. S. R. , White, A. L. , Zafereo, J. , Wong, A. J. , Berends, J. E. , AboHashem, S. , Williams, B. , Aymard, J. M. , Kanwar, A. , Perni, S. , Rock, C. D. , Cooksey, L. , Campbell, S. , Ding, Y. , Lai, S. Y. , Marai, E. G. , Vock, D. , Canahuate, G. M. , Freymann, J. & 3 others Farahani, K., Kalpathy-Cramer, J. & Fuller, C. D. Jul 4 2017 In : Scientific Data. 4, 170077

Research output: Research - peer-reviewArticle

Computed Tomography
Cancer
Segmentation
Demographics
Computed tomography

Personalized Radiotherapy Planning Based on a Computational Tumor Growth Model

Le, M., Delingette, H., Kalpathy-Cramer, J., Gerstner, E. R., Batchelor, T., Unkelbach, J. & Ayache, N. Mar 1 2017 In : IEEE Transactions on Medical Imaging. 36, 3, p. 815-825 11 p., 7738594

Research output: Research - peer-reviewArticle

Radiotherapy
Growth
Neoplasms
Tumors
Planning

Plus Disease in Retinopathy of Prematurity: Diagnostic Trends in 2016 Versus 2007

Moleta, C. , Campbell, J. P. , Kalpathy-Cramer, J. , Chan, R. V. P. , Ostmo, S. , Jonas, K. , Chiang, M. F. , Chiang, M. F. , Ostmo, S. , Sonmez, K. , Campbell, J. P. , Chan, R. V. P. , Jonas, K. , Horowitz, J. , Coki, O. , Eccles, C. A. , Sarna, L. , Berrocal, A. , Negron, C. , Denser, K. & 28 others Cumming, K., Osentoski, T., Check, T., Zajechowski, M., Lee, T., Kruger, E., McGovern, K., Simmons, C., Murthy, R., Galvis, S., Rotter, J., Chen, I., Li, X., Taylor, K., Roll, K., Kalpathy-Cramer, J., Erdogmus, D., Ioannidis, S., Martinez-Castellanos, M. A., Salinas-Longoria, S., Romero, R., Arriola, A., Olguin-Manriquez, F., Meraz-Gutierrez, M., Dulanto-Reinoso, C. M., Montero-Mendoza, C., Imaging & Informatics in ROP Research Consortium, . I. I. R. O. P. R. C. & Imaging & Informatics in ROP Research Consortium, . I. I. R. O. P. R. C. Apr 1 2017 In : American Journal of Ophthalmology. 176, p. 70-76 7 p.

Research output: Research - peer-reviewArticle

Retinopathy of Prematurity
Patient Care
Teaching
Databases
Research
2016
2 Citations

A Comparison of Lung Nodule Segmentation Algorithms: Methods and Results from a Multi-institutional Study

Kalpathy-Cramer, J., Zhao, B., Goldgof, D., Gu, Y., Wang, X., Yang, H., Tan, Y., Gillies, R. & Napel, S. Feb 3 2016 (Accepted/In press) In : Journal of Digital Imaging. p. 1-12 12 p.

Research output: Research - peer-reviewArticle

Lung
Datasets
Neoplasms
Tumors
Cone-Beam Computed Tomography
11 Citations

Beyond mean pharyngeal constrictor dose for beam path toxicity in non-target swallowing muscles: Dose-volume correlates of chronic radiation-associated dysphagia (RAD) after oropharyngeal intensity modulated radiotherapy

Dale, T. , Hutcheson, K. , Mohamed, A. S. R. , Lewin, J. S. , Gunn, G. B. , Rao, A. U. K. , Kalpathy-Cramer, J. , Frank, S. J. , Garden, A. S. , Messer, J. A. , Warren, B. , Lai, S. Y. , Beadle, B. M. , Morrison, W. H. , Phan, J. , Skinner, H. , Gross, N. , Ferrarotto, R. , Weber, R. S. , Rosenthal, D. I. & 1 others Fuller, C. D. Feb 1 2016 In : Radiotherapy and Oncology. 118, 2, p. 304-314 11 p.

Research output: Research - peer-reviewArticle

Intensity-Modulated Radiotherapy
Deglutition
Deglutition Disorders
Radiation
Muscles
2 Citations

Dynamic contrast-enhanced MRI detects acute radiotherapy-induced alterations in mandibular microvasculature: Prospective assessment of imaging biomarkers of normal tissue injury

Sandulache, V. C. , Hobbs, B. P. , Mohamed, R. A. S. , Frank, S. J. , Song, J. , Ding, Y. , Ger, R. , Court, L. E. , Kalpathy-Cramer, J. , Hazle, J. D. , Wang, J. , Awan, M. J. , Rosenthal, D. I. , Garden, A. S. , Gunn, G. B. , Colen, R. R. , Elshafeey, N. , Elbanan, M. , Hutcheson, K. A. , Lewin, J. S. & 5 others Chambers, M. S., Hofstede, T. M., Weber, R. S., Lai, S. Y. & Fuller, C. D. Aug 8 2016 In : Scientific Reports. 6, 29864

Research output: Research - peer-reviewArticle

Microvessels
Radiotherapy
Biomarkers
Wounds and Injuries
Therapeutics
7 Citations

Expert diagnosis of plus disease in retinopathy of prematurity from computer-based image analysis

Peter Campbell, J. , Ataer-Cansizoglu, E. , Bolon-Canedo, V. , Bozkurt, A. , Erdogmus, D. , Kalpathy-Cramer, J. , Patel, S. N. , Reynolds, J. D. , Horowitz, J. , Hutcheson, K. , Shapiro, M. , Repka, M. X. , Ferrone, P. , Drenser, K. , Martinez-Castellanos, M. A. , Ostmo, S. , Jonas, K. , Paul Chan, R. V. , Chiang, M. F. , Sonmez, K. & 22 others Coki, O., Eccles, C. A., Sarna, L., Berrocal, A., Negron, C., Cumming, K., Osentoski, T., Check, T., Lee, T., Kruger, E., McGovern, K., Simmons, C., Murthy, R., Galvis, S., Rotter, J., Chen, I., Li, X., Roll, K., Salinas-Longoria, S., Romero, R., Arriola, A. & the Imaging and Informatics in ROP (i-ROP) Research Consortium Jun 1 2016 In : JAMA Ophthalmology. 134, 6, p. 651-657 7 p.

Research output: Research - peer-reviewArticle

Retinopathy of Prematurity
Informatics
Veins
Arteries
ROP
3 Citations

Magnetic resonance imaging of swallowing-related structures in nasopharyngeal carcinoma patients receiving IMRT: Longitudinal dose-response characterization of quantitative signal kinetics

Messer, J. A., Mohamed, A. S. R., Hutcheson, K. A., Ding, Y., Lewin, J. S., Wang, J., Lai, S. Y., Frank, S. J., Garden, A. S., Sandulache, V., Eichelberger, H., French, C. C., Colen, R. R., Phan, J., Kalpathy-Cramer, J., Hazle, J. D., Rosenthal, D. I., Gunn, G. B. & Fuller, C. D. Feb 1 2016 In : Radiotherapy and Oncology. 118, 2, p. 315-322 8 p.

Research output: Research - peer-reviewArticle

Nasopharyngeal Neoplasms
Deglutition
Radiotherapy
Magnetic Resonance Imaging
Nasopharyngeal carcinoma
1 Citations

MRI Based Bayesian Personalization of a Tumor Growth Model

Lê, M., Delingette, H., Kalpathy-Cramer, J., Gerstner, E. R., Batchelor, T., Unkelbach, J. & Ayache, N. Oct 1 2016 In : IEEE Transactions on Medical Imaging. 35, 10, p. 2329-2339 11 p., 7463075

Research output: Research - peer-reviewArticle

Magnetic resonance imaging
Tumors
Growth
Neoplasms
Brain
2 Citations

Multimodality imaging and mathematical modelling of drug delivery to glioblastomas

Boujelben, A., Watson, M., McDougall, S., Yen, Y. F., Gerstner, E. R., Catana, C., Deisboeck, T., Batchelor, T. T., Boas, D., Rosen, B., Kalpathy-Cramer, J. & Chaplain, M. A. J. Oct 6 2016 In : Interface Focus. 6, 5

Research output: Research - peer-reviewArticle

Drug Design
Glioblastoma
Pharmaceutical Preparations
Drug delivery
Tumors
1 Citations

Phase II study of tivozanib, an oral VEGFR inhibitor, in patients with recurrent glioblastoma

Kalpathy-Cramer, J., Chandra, V., da, X., Ou, Y., Emblem, K. E., Muzikansky, A., Cai, X., Douw, L., Evans, J. G., Dietrich, J., Chi, A. S., Wen, P. Y., Stufflebeam, S., Rosen, B., Duda, D. G., Jain, R. K., Batchelor, T. T. & Gerstner, E. R. Nov 16 2016 (Accepted/In press) In : Journal of Neuro-Oncology. p. 1-8 8 p.

Research output: Research - peer-reviewArticle

Glioblastoma
tivozanib
Neoplasms
Therapeutics
Vascular Endothelial Growth Factor A
5 Citations

Plus Disease in Retinopathy of Prematurity: Improving Diagnosis by Ranking Disease Severity and Using Quantitative Image Analysis

Kalpathy-Cramer, J. , Campbell, J. P. , Erdogmus, D. , Tian, P. , Kedarisetti, D. , Moleta, C. , Reynolds, J. D. , Hutcheson, K. , Shapiro, M. J. , Repka, M. X. , Ferrone, P. , Drenser, K. , Horowitz, J. , Sonmez, K. , Swan, R. , Ostmo, S. , Jonas, K. E. , Chan, R. V. P. , Chiang, M. F. , Chiang, M. F. & 38 others Ostmo, S., Sonmez, K., Campbell, J. P., Chan, R. V. P., Jonas, K., Horowitz, J., Coki, O., Eccles, C. A., Sarna, L., Berrocal, A., Negron, C., Denser, K., Cumming, K., Osentoski, T., Check, T., Zajechowski, M., Lee, T., Kruger, E., McGovern, K., Simmons, C., Murthy, R., Galvis, S., Rotter, J., Chen, I., Li, X., Taylor, K., Roll, K., Kalpathy-Cramer, J., Erdogmus, D., Martinez-Castellanos, M. A., Salinas-Longoria, S., Romero, R., Arriola, A., Olguin-Manriquez, F., Meraz-Gutierrez, M., Dulanto-Reinoso, C. M., Montero-Mendoza, C. & Imaging and Informatics in Retinopathy of Prematurity Research Consortium Nov 1 2016 In : Ophthalmology. 123, 11, p. 2345-2351 7 p.

Research output: Research - peer-reviewArticle

Retinopathy of Prematurity
Informatics
Databases
Physicians
ROP
3 Citations

Plus Disease in Retinopathy of Prematurity: A Continuous Spectrum of Vascular Abnormality as a Basis of Diagnostic Variability

Campbell, J. P. , Kalpathy-Cramer, J. , Erdogmus, D. , Tian, P. , Kedarisetti, D. , Moleta, C. , Reynolds, J. D. , Hutcheson, K. , Shapiro, M. J. , Repka, M. X. , Ferrone, P. , Drenser, K. , Horowitz, J. , Sonmez, K. , Swan, R. , Ostmo, S. , Jonas, K. E. , Chan, R. V. P. , Chiang, M. F. , Chiang, M. F. & 37 others Ostmo, S., Sonmez, K., Campbell, J. P., Chan, R. V. P., Jonas, K., Horowitz, J., Coki, O., Eccles, C. A., Sarna, L., Berrocal, A., Negron, C., Denser, K., Cumming, K., Osentoski, T., Check, T., Zajechowski, M., Lee, T., Kruger, E., McGovern, K., Simmons, C., Murthy, R., Galvis, S., Rotter, J., Chen, I., Li, X., Taylor, K., Roll, K., Kalpathy-Cramer, J., Erdogmus, D., Martinez-Castellanos, M. A., Salinas-Longoria, S., Romero, R., Arriola, A., Olguin-Manriquez, F., Meraz-Gutierrez, M., Dulanto-Reinoso, C. M. & Montero-Mendoza, C. Nov 1 2016 In : Ophthalmology. 123, 11, p. 2338-2344 7 p.

Research output: Research - peer-reviewArticle

Retinopathy of Prematurity
Blood Vessels
Datasets
Analysis of Variance
Informatics
2 Citations

Prognostic value of pretherapy platelet elevation in oropharyngeal cancer patients treated with chemoradiation

Shoultz-Henley, S., Garden, A. S., Mohamed, A. S. R., Sheu, T., Kroll, M. H., Rosenthal, D. I., Gunn, G. B., Hayes, A. J., French, C., Eichelberger, H., Kalpathy-Cramer, J., Smith, B. D., Phan, J., Ayoub, Z., Lai, S. Y., Pham, B., Kies, M., Gold, K. A., Sturgis, E. & Fuller, C. D. Mar 1 2016 In : International Journal of Cancer. 138, 5, p. 1290-1297 8 p.

Research output: Research - peer-reviewArticle

Oropharyngeal Neoplasms
Blood Platelets
Platelet Count
Survival
Neoplasm Metastasis
10 Citations

Quantitative imaging in cancer clinical trials

Yankeelov, T. E., Mankoff, D. A., Schwartz, L. H., Lieberman, F. S., Buatti, J. M., Mountz, J. M., Erickson, B. J., Fennessy, F. M. M., Huang, W., Kalpathy-Cramer, J., L.Wahl, R., Linden, H. M., Kinahan, P. E., Zhao, B., Hylton, N. M., Gillies, R. J., Clarke, L., Nordstrom, R. & Rubin, D. L. Jan 15 2016 In : Clinical Cancer Research. 22, 2, p. 284-290 7 p.

Research output: Research - peer-reviewArticle

Clinical Trials
Neoplasms
Therapeutics
Patient Care

Reliable estimation of microvascular flow patterns in patients with disrupted blood-brain barrier using dynamic susceptibility contrast MRI

Hansen, M. B., Tietze, A., Kalpathy-Cramer, J., Gerstner, E. R., Batchelor, T. T., Østergaard, L. & Mouridsen, K. 2016 (Accepted/In press) In : Journal of Magnetic Resonance Imaging.

Research output: Research - peer-reviewArticle

Blood-Brain Barrier
Glioma
Signal-To-Noise Ratio
Contrast Media
Perfusion

Toward a severity index for ROP: An unsupervised approach

Tian, P., Ataer-Cansizoglu, E., Kalpathy-Cramer, J., Ostmo, S., Jonas, K., Chan, R. V. P., Campbell, J. P., Chiang, M. F. & Erdogmus, D. Oct 13 2016 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October, p. 1312-1315 4 p. 7590948

Research output: ResearchConference contribution

Retinopathy of Prematurity
Low Birth Weight Infant
Blindness
Learning
Datasets
2015

A decade of community-wide efforts in advancing medical image understanding and retrieval

Demner-Fushman, D., Antani, S., Kalpathy-Cramer, J. & Müller, H. Jan 1 2015 In : Computerized Medical Imaging and Graphics. 39, p. 1-2 2 p.

Research output: Research - peer-reviewArticle

3 Citations

A GMM-based feature extraction technique for the automated diagnosis of Retinopathy of Prematurity

Bolon-Canedo, V., Ataer-Cansizoglu, E., Erdogmus, D., Kalpathy-Cramer, J. & Chiang, M. F. Jul 21 2015 Proceedings - International Symposium on Biomedical Imaging. IEEE Computer Society, Vol. 2015-July, p. 1498-1501 4 p. 7164161

Research output: ResearchConference contribution

Retinopathy of Prematurity
Feature extraction
Statistics
Blindness
Eye Diseases
2 Citations

Analysis of shape assumptions in 3D reconstruction of retina from multiple fundus images

Ataer-Cansizoglu, E., Taguchi, Y., Kalpathy-Cramer, J., Chiang, M. F. & Erdogmus, D. Jul 21 2015 Proceedings - International Symposium on Biomedical Imaging. IEEE Computer Society, Vol. 2015-July, p. 1502-1505 4 p. 7164162

Research output: ResearchConference contribution

Least-Squares Analysis
Retina
Cameras
5 Citations

Analysis of underlying causes of inter-expert disagreement in reti-nopathy of prematurity diagnosis: Application of machine learning principles

Ataer-Cansizoglu, E., Kalpathy-Cramer, J., You, S., Keck, K., Erdogmus, D. & Chiang, M. F. 2015 In : Methods of Information in Medicine. 54, 1, p. 93-102 10 p.

Research output: Research - peer-reviewArticle

Machine Learning
Spatial Analysis
Decision Support Techniques
Low Birth Weight Infant
Blindness
1 Citations

Auto-segmentation of the brachial plexus assessed with TaCTICS-A software platform for rapid multiple-metric quantitative evaluation of contours

Awan, M., Dyer, B. A., Kalpathy-Cramer, J., Bongers, E., Dahele, M., Yang, J., Walker, G. V., Thaker, N. G., Holliday, E., Bishop, A. J., Thomas, C. R., Rosenthal, D. I. & Fuller, C. D. Apr 1 2015 In : Acta Oncologica. 54, 4, p. 556-560 5 p.

Research output: Research - peer-reviewArticle

6 Citations

Bayesian personalization of brain tumor growth model

Lê, M., Delingette, H., Kalpathy-Cramer, J., Gerstner, E. R., Batchelor, T., Unkelbach, J. & Ayache, N. 2015 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 9350, p. 424-432 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9350)

Research output: ResearchConference contribution

Brain Tumor
Tumor Growth
Personalization
Growth Model
Tumors
59 Citations

Consensus recommendations for a standardized Brain Tumor Imaging Protocol in clinical trials

Ellingson, B. M. , Bendszus, M. , Boxerman, J. , Barboriak, D. , Erickson, B. J. , Smits, M. , Nelson, S. J. , Gerstner, E. , Alexander, B. , Goldmacher, G. , Wick, W. , Vogelbaum, M. , Weller, M. , Galanis, E. , Kalpathy-Cramer, J. , Shankar, L. , Jacobs, P. , Pope, W. B. , Yang, D. , Chung, C. & 15 others Knopp, M. V., Cha, S., Van Den Bent, M. J., Chang, S., Al Yung, W. K., Cloughesy, T. F., Wen, P. Y., Gilbert, M. R., Whitney, A., Sandak, D., Musella, A., Haynes, C., Wallace, M., Arons, D. F. & Kingston, A. Sep 1 2015 In : Neuro-Oncology. 17, 9, p. 1188-1198 11 p.

Research output: Research - peer-reviewArticle

Neuroimaging
Brain Neoplasms
Clinical Trials
National Cancer Institute (U.S.)
United States Food and Drug Administration
5 Citations

Dealing with inter-expert variability in retinopathy of prematurity: A machine learning approach

Bolón-Canedo, V., Ataer-Cansizoglu, E., Erdogmus, D., Kalpathy-Cramer, J., Fontenla-Romero, O., Alonso-Betanzos, A. & Chiang, M. F. Oct 1 2015 In : Computer Methods and Programs in Biomedicine. 122, 1, p. 1-15 15 p.

Research output: Research - peer-reviewArticle

Retinopathy of Prematurity
Machine Learning
Learning systems
Feature extraction
Low Birth Weight Infant
32 Citations

Evaluating performance of biomedical image retrieval systems-An overview of the medical image retrieval task at ImageCLEF 2004-2013

Kalpathy-Cramer, J., de Herrera, A. G. S., Demner-Fushman, D., Antani, S., Bedrick, S. & Müller, H. Jan 1 2015 In : Computerized Medical Imaging and Graphics. 39, p. 55-61 7 p.

Research output: Research - peer-reviewArticle

Image classification
Image retrieval
Benchmarking
Research Personnel
Research
7 Citations

Intravoxel incoherent motion imaging kinetics during chemoradiotherapy for human papillomavirus-associated squamous cell carcinoma of the oropharynx: Preliminary results from a prospective pilot study

Ding, Y., Hazle, J. D., Mohamed, A. S. R., Frank, S. J., Hobbs, B. P., Colen, R. R., Gunn, G. B., Wang, J., Kalpathy-Cramer, J., Garden, A. S., Lai, S. Y., Rosenthal, D. I. & Fuller, C. D. Dec 1 2015 In : NMR in Biomedicine. 28, 12, p. 1645-1654 10 p.

Research output: Research - peer-reviewArticle

Oropharynx
Chemoradiotherapy
Squamous Cell Carcinoma
Prospective Studies
Imaging techniques
13 Citations

Quality assurance assessment of diagnostic and radiation therapy-simulation CT image registration for head and neck radiation therapy: Anatomic region of interest-based comparison of rigid and deformable algorithms

Mohamed, A. S. R., Ruangskul, M. N., Awan, M. J., Baron, C. A., Kalpathy-Cramer, J., Castillo, R., Castillo, E., Guerrero, T. M., Kocak-Uzel, E., Yang, J., Court, L. E., Kantor, M. E., Gunn, G. B., Colen, R. R., Frank, S. J., Garden, A. S., Rosenthal, D. I. & Fuller, C. D. Mar 1 2015 In : Radiology. 274, 3, p. 752-763 12 p.

Research output: Research - peer-reviewArticle

Neck
Radiotherapy
Head
Tomography
Workflow
23 Citations

Quantitative imaging biomarkers: A review of statistical methods for computer algorithm comparisons

Obuchowski, N. A., Reeves, A. P., Huang, E. P., Wang, X. F., Buckler, A. J., Kim, H. J., Barnhart, H. X., Jackson, E. F., Giger, M. L., Pennello, G., Toledano, A. Y., Kalpathy-Cramer, J., Apanasovich, T. V., Kinahan, P. E., Myers, K. J., Goldgof, D. B., Barboriak, D. P., Gillies, R. J., Schwartz, L. H. & Sullivan, D. C. Feb 27 2015 In : Statistical Methods in Medical Research. 24, 1, p. 68-106 39 p.

Research output: Research - peer-reviewArticle

Biomarkers
Statistical method
Imaging
Review
Standards
5 Citations

Repeatability of cerebral perfusion using dynamic susceptibility contrast MRI in glioblastoma patients

Jafari-Khouzani, K., Emblem, K. E., Kalpathy-Cramer, J., Bjørnerud, A., Vangel, M. G., Gerstner, E. R., Schmainda, K. M., Paynabar, K., Wu, O., Wen, P. Y., Batchelor, T., Rosen, B. & Stufflebeam, S. M. 2015 In : Translational Oncology. 8, 3, p. 137-146 10 p.

Research output: Research - peer-reviewArticle

Glioblastoma
Perfusion
Cerebrovascular Circulation
Neoplasms
Cerebral Blood Volume
5 Citations

Repeatability of standardized and normalized relative CBV in patients with newly diagnosed glioblastoma

Prah, M. A., Stufflebeam, S. M., Paulson, E. S., Kalpathy-Cramer, J., Gerstner, E. R., Batchelor, T. T., Barboriak, D. P., Rosen, B. R. & Schmainda, K. M. Sep 1 2015 In : American Journal of Neuroradiology. 36, 9, p. 1654-1661 8 p.

Research output: Research - peer-reviewArticle

Glioblastoma
Neoplasms
Brain Neoplasms
Sample Size
Brain
13 Citations

Standard chemoradiation for glioblastoma results in progressive brain volume loss

Prust, M. J., Jafari-Khouzani, K., Kalpathy-Cramer, J., Polaskova, P., Batchelor, T. T., Gerstner, E. R. & Dietrich, J. Aug 25 2015 In : Neurology. 85, 8, p. 683-691 9 p.

Research output: Research - peer-reviewArticle

Glioblastoma
Brain
Lateral Ventricles
Therapeutics
White Matter
13 Citations

Statistical issues in the comparison of quantitative imaging biomarker algorithms using pulmonary nodule volume as an example

Obuchowski, N. A., Barnhart, H. X., Buckler, A. J., Pennello, G., Wang, X. F., Kalpathy-Cramer, J., Kim, H. J. & Reeves, A. P. Feb 27 2015 In : Statistical Methods in Medical Research. 24, 1, p. 107-140 34 p.

Research output: Research - peer-reviewArticle

Nodule
Biomarkers
Tumor
Imaging
Lung
183 Citations

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)

Menze, B. H. , Jakab, A. , Bauer, S. , Kalpathy-Cramer, J. , Farahani, K. , Kirby, J. , Burren, Y. , Porz, N. , Slotboom, J. , Wiest, R. , Lanczi, L. , Gerstner, E. , Weber, M. A. , Arbel, T. , Avants, B. B. , Ayache, N. , Buendia, P. , Collins, D. L. , Cordier, N. , Corso, J. J. & 48 others Criminisi, A., Das, T., Delingette, H., Demiralp, Ç., Durst, C. R., Dojat, M., Doyle, S., Festa, J., Forbes, F., Geremia, E., Glocker, B., Golland, P., Guo, X., Hamamci, A., Iftekharuddin, K. M., Jena, R., John, N. M., Konukoglu, E., Lashkari, D., Mariz, J. A., Meier, R., Pereira, S., Precup, D., Price, S. J., Raviv, T. R., Reza, S. M. S., Ryan, M., Sarikaya, D., Schwartz, L., Shin, H. C., Shotton, J., Silva, C. A., Sousa, N., Subbanna, N. K., Szekely, G., Taylor, T. J., Thomas, O. M., Tustison, N. J., Unal, G., Vasseur, F., Wintermark, M., Ye, D. H., Zhao, L., Zhao, B., Zikic, D., Prastawa, M., Reyes, M. & Van Leemput, K. Oct 1 2015 In : IEEE Transactions on Medical Imaging. 34, 10, p. 1993-2024 32 p., 2377694

Research output: Research - peer-reviewArticle

Benchmarking
Brain Neoplasms
Image segmentation
Tumors
Brain
1 Citations

Upsampling dynamic contrast enhanced MRI

Jafari-Khouzani, K., Gerstner, E., Rosen, B. & Kalpathy-Cramer, J. Jul 21 2015 Proceedings - International Symposium on Biomedical Imaging. IEEE Computer Society, Vol. 2015-July, p. 1032-1035 4 p. 7164047

Research output: ResearchConference contribution

Magnetic resonance imaging
Imaging techniques
Magnetic Resonance Imaging
Magnetic resonance
Brain
2014
40 Citations

Advanced magnetic resonance imaging of the physical processes in human Glioblastoma

Kalpathy-Cramer, J., Gerstner, E. R., Emblem, K. E., Andronesi, O. C. & Rosen, B. Sep 1 2014 In : Cancer Research. 74, 17, p. 4622-4637 16 p.

Research output: Research - peer-reviewArticle

Physical Phenomena
Glioblastoma
Magnetic Resonance Imaging
Neoplasms
Pathologic Processes
5 Citations

Development of a software for quantitative evaluation radiotherapy target and organ-at-risk segmentation comparison

Kalpathy-Cramer, J., Awan, M., Bedrick, S., Rasch, C. R. N., Rosenthal, D. I. & Fuller, C. D. Feb 2014 In : Journal of Digital Imaging. 27, 1, p. 108-119 12 p.

Research output: Research - peer-reviewArticle

Organs at Risk
Radiotherapy
Software
Radiation Oncology
Information Storage and Retrieval
7 Citations

Errors in quantitative image analysis due to platform-dependent image scaling

Chenevert, T. L. , Malyarenko, D. I. , Newitt, D. , Li, X. , Jayatilake, M. , Tudorica, A. , Fedorov, A. , Kikinis, R. , Liu, T. T. , Muzi, M. , Oborski, M. J. , Laymon, C. M. , Li, X. , Thomas, Y. , Jayashree, K. C. , Mountz, J. M. , Kinahan, P. E. , Rubin, D. L. , Fennessy, F. , Huang, W. & 2 others Hylton, N. & Ross, B. D. 2014 In : Translational Oncology. 7, 1, p. 65-71 7 p.

Research output: Research - peer-reviewArticle

Software
Water
Mineral Oil
Ice
Magnetic Resonance Imaging
9 Citations

Low incidence of pseudoprogression by imaging in newly diagnosed glioblastoma patients treatedwith cediranib in combinationwith chemoradiation

Pinho, M. C., Polaskova, P., Kalpathy-Cramer, J., Jennings, D., Emblem, K. E., Jain, R. K., Rosen, B. R., Wen, P. Y., Sorensen, A. G., Batchelor, T. T. & Gerstner, E. R. 2014 In : Oncologist. 19, 1, p. 75-81 7 p.

Research output: Research - peer-reviewArticle

Glioblastoma
Incidence
cediranib
Neoplasms
Control Groups
10 Citations

Quantitative imaging network: Data sharing and competitive algorithm validation leveraging the cancer imaging archive

Kalpathy-Cramer, J., Freymann, J. B., Kirby, J. S., Kinahan, P. E. & Prior, A. F. W. 2014 In : Translational Oncology. 7, 1, p. 147-152 6 p.

Research output: Research - peer-reviewArticle

Information Dissemination
Neoplasms
Biomarkers
Benchmarking
Clinical Pathology
6 Citations

Structure-based level set method for automatic retinal vasculature segmentation

Dizdaroğlu, B., Ataer-Cansizoglu, E., Kalpathy-Cramer, J., Keck, K., Chiang, M. F. & Erdogmus, D. Aug 11 2014 In : Eurasip Journal on Image and Video Processing. 2014, 1, 39

Research output: Research - peer-reviewArticle

Edge detection
Seed
Experiments
35 Citations

Variations of dynamic contrast-enhanced magnetic resonance imaging in evaluation of breast cancer therapy response: A multicenter data analysis challenge

Huang, W. , Li, X. , Chen, Y. , Li, X. , Chang, M. C. , Oborski, M. J. , Malyarenko, D. I. , Muzi, M. , Jajamovich, G. H. , Fedorov, A. , Tudorica, A. , Gupta, S. N. , Laymon, C. M. , Marro, K. I. , Dyvorne, H. A. , Miller, J. V. , Barbodiak, D. P. , Chenevert, T. L. , Yankeelov, T. E. , Mountz, J. M. & 5 others Kinahan, P. E., Kikinis, R., Taouli, B., Fennessy, F. & Kalpathy-Cramer, J. 2014 In : Translational Oncology. 7, 1, p. 153-166 14 p.

Research output: Research - peer-reviewArticle

Magnetic Resonance Imaging
Breast Neoplasms
Therapeutics
Neoplasms
Plasma Volume
4 Citations

Web based tools for visualizing imaging data and development of XNATView, a zero footprint image viewer

Gutman, D. A., Dunn, W. D., Cobb, J., Stoner, R. M., Kalpathy-Cramer, J. & Erickson, B. May 27 2014 In : Frontiers in Neuroinformatics. 8, MAY, 53

Research output: Research - peer-reviewArticle

Digital Imaging and Communications in Medicine (DICOM)
Imaging techniques
Neuroimaging
Web browsers
Metadata
2013
5 Citations

Contour-based shape representation using principal curves

Ataer-Cansizoglu, E., Bas, E., Kalpathy-Cramer, J., Sharp, G. C. & Erdogmus, D. Apr 2013 In : Pattern Recognition. 46, 4, p. 1140-1150 11 p.

Research output: Research - peer-reviewArticle

Membership functions
Image processing
Experiments

Developing a survey to assess factors that contribute to physician involvement in clinical research

Taliercio, V., Logan, J. R., Kalpathy-Cramer, J. & Oteroa, P. 2013 Studies in Health Technology and Informatics. 1-2 ed. Vol. 192, p. 107-111 5 p.

Research output: ResearchConference contribution

Physicians
Research
Surveys and Questionnaires
Informatics
Economic Development
121 Citations

Improved tumor oxygenation and survival in glioblastoma patients who show increased blood perfusion after cediranib and chemoradiation

Batchelor, T. T. , Gerstner, E. R. , Emblem, K. E. , Duda, D. G. , Kalpathy-Cramer, J. , Snuderl, M. , Ancukiewicz, M. , Polaskova, P. , Pinho, M. C. , Jennings, D. , Plotkin, S. R. , Chi, A. S. , Eichler, A. F. , Dietrich, J. , Hochberg, F. H. , Lu-Emerson, C. , Iafrate, A. J. , Ivy, S. P. , Rosen, B. R. , Loeffler, J. S. & 3 others Wen, P. Y., Sorensen, A. G. & Jain, R. K. Nov 19 2013 In : Proceedings of the National Academy of Sciences of the United States of America. 110, 47, p. 19059-19064 6 p.

Research output: Research - peer-reviewArticle

Glioblastoma
Perfusion
Survival
Neoplasms
Therapeutics