Craig Yoshioka

Research Assistant Professor

  • 3303 SW Bond Avenue, CH13B, Portland OR 97239

  • 1916 Citations
  • 20 h-Index
20022019
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Research Output 2002 2019

  • 1916 Citations
  • 20 h-Index
  • 31 Article
  • 1 Conference contribution
  • 1 Letter
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Article
2019

Full-Length P2X7 Structures Reveal How Palmitoylation Prevents Channel Desensitization

McCarthy, A. E., Yoshioka, C. & Mansoor, S. E., Oct 17 2019, In : Cell. 179, 3, p. 659-670.e13

Research output: Contribution to journalArticle

Purinergic P2X7 Receptors
Lipoylation
Adenosine Triphosphate
Cryoelectron Microscopy
Guanosine
3 Citations (Scopus)

Mechanism of pharmacochaperoning in a mammalian KATP channel revealed by cryo-EM

Martin, G. M., Sung, M. W., Yang, Z., Innes, L. M., Kandasamy, B., David, L., Yoshioka, C. & Shyng, S-L., Jul 1 2019, In : eLife. 8, e46417.

Research output: Contribution to journalArticle

Open Access
Sulfonylurea Receptors
KATP Channels
repaglinide
Congenital Hyperinsulinism
ATP-Binding Cassette Transporters
3 Citations (Scopus)

Structure of the gene therapy vector, adeno-associated virus with its cell receptor, AAVR

Meyer, N. L., Hu, G., Davulcu, O., Xie, Q., Noble, A. J., Yoshioka, C., Gingerich, D. S., Trzynka, A., David, L., Stagg, S. M. & Chapman, M., May 22 2019, In : eLife. 8

Research output: Contribution to journalArticle

Open Access
Gene therapy
Dependovirus
Viruses
Genetic Therapy
Electron Microscope Tomography
2018
25 Citations (Scopus)

Cryo-EM structure of the benzodiazepine-sensitive α1β1γ2S tri-heteromeric GABAA receptor in complex with GABA

Phulera, S., Zhu, H., Yu, J., Claxton, D. P., Yoder, N., Yoshioka, C. & Gouaux, E., Jul 25 2018, In : eLife. 7, e39383.

Research output: Contribution to journalArticle

GABA-A Receptors
Benzodiazepines
gamma-Aminobutyric Acid
Ion Channels
Cysteine Loop Ligand-Gated Ion Channel Receptors
27 Citations (Scopus)

Gating mechanisms of acid-sensing ion channels

Yoder, N., Yoshioka, C. & Gouaux, E., Mar 15 2018, In : Nature. 555, 7696, p. 397-401 5 p.

Research output: Contribution to journalArticle

Acid Sensing Ion Channels
Thumb
Protons
Degenerin Sodium Channels
Chickens
16 Citations (Scopus)

Glycan shield and fusion activation of a deltacoronavirus spike glycoprotein fine-tuned for enteric infections

Xiong, X., Tortorici, M. A., Snijder, J., Yoshioka, C., Walls, A. C., Li, W., McGuire, A. T., Rey, F. A., Bosch, B. J. & Veesler, D., Feb 1 2018, In : Journal of Virology. 92, 4, e01628-17.

Research output: Contribution to journalArticle

Polysaccharides
glycoproteins
Protein S
Glycoproteins
Swine
7 Citations (Scopus)

Mechanisms for Zinc and Proton Inhibition of the GluN1/GluN2A NMDA Receptor

Jalali-Yazdi, F., Chowdhury, S., Yoshioka, C. & Gouaux, E., Nov 29 2018, In : Cell. 175, 6, p. 1520-1532.e15

Research output: Contribution to journalArticle

N-Methyl-D-Aspartate Receptors
Protons
Zinc
Ion Channels
Constriction
4 Citations (Scopus)

Structure of native lens connexin 46/50 intercellular channels by cryo-EM

Myers, J. B., Haddad, B. G., O’Neill, S. E., Chorev, D. S., Yoshioka, C., Robinson, C. V., Zuckerman, D. & Reichow, S. L., Dec 20 2018, In : Nature. 564, 7736, p. 372-377 6 p.

Research output: Contribution to journalArticle

Connexins
Gap Junctions
Lenses
Cell Communication
Cryoelectron Microscopy
9 Citations (Scopus)

Structure of the human epithelial sodium channel by cryo-electron microscopy

Noreng, S., Bharadwaj, A., Posert, R., Yoshioka, C. & Baconguis, I., Sep 25 2018, In : eLife. 7

Research output: Contribution to journalArticle

Epithelial Sodium Channels
Cryoelectron Microscopy
Thumb
Electron microscopy
Fingers
2017
35 Citations (Scopus)

Anti-diabetic drug binding site in a mammalian KATP channel revealed by Cryo-EM

Martin, G. M., Kandasamy, B., Dimaio, F., Yoshioka, C. & Shyng, S-L., Oct 16 2017, In : eLife. 6, e31054.

Research output: Contribution to journalArticle

KATP Channels
Glyburide
Binding Sites
Pharmaceutical Preparations
Adenosine Triphosphate
65 Citations (Scopus)

Cryo-EM structure of the ATP-sensitive potassium channel illuminates mechanisms of assembly and gating

Martin, G. M., Yoshioka, C., Rex, E. A., Fay, J. F., Xie, Q., Whorton, M., Chen, J. Z. & Shyng, S-L., Jan 16 2017, In : eLife. 6, e24149.

Research output: Contribution to journalArticle

KATP Channels
Glyburide
Adenosine Triphosphate
Hypoglycemic Agents
Conformations
2016
50 Citations (Scopus)

Architecture of fully occupied GluA2 AMPA receptor-TARP complex elucidated by cryo-EM

Zhao, Y., Chen, S., Yoshioka, C., Baconguis, I. & Gouaux, E., Jul 1 2016, In : Nature. 536, 7614, p. 108-111 4 p.

Research output: Contribution to journalArticle

Cryoelectron Microscopy
AMPA Receptors
Proteins
Ligands
Ion Channels
81 Citations (Scopus)

Mechanism of NMDA Receptor Inhibition and Activation

Zhu, S., Stein, R. A., Yoshioka, C., Lee, C. H., Goehring, A., McHaourab, H. S. & Gouaux, E., Apr 21 2016, In : Cell. 165, 3, p. 704-714 11 p.

Research output: Contribution to journalArticle

N-Methyl-D-Aspartate Receptors
Chemical activation
Ligands
Ion Channels
Dimers
2013
3 Citations (Scopus)

Maskiton: Interactive, web-based classification of single-particle electron microscopy images

Yoshioka, C., Lyumkis, D., Carragher, B. & Potter, C. S., May 2013, In : Journal of Structural Biology. 182, 2, p. 155-163 9 p.

Research output: Contribution to journalArticle

Electron Microscopy
Masks
Ribosome Subunits
Ubiquitin-Protein Ligases
Immunoglobulin M
2012
117 Citations (Scopus)

Characterization of circulating tumor cell aggregates identified in patients with epithelial tumors

Cho, E. H., Wendel, M., Luttgen, M., Yoshioka, C., Marrinucci, D., Lazar, D., Schram, E., Nieva, J., Bazhenova, L., Morgan, A., Ko, A. H., Korn, W. M., Kolatkar, A., Bethel, K. & Kuhn, P., Feb 2012, In : Physical Biology. 9, 1, 016001.

Research output: Contribution to journalArticle

Circulating Neoplastic Cells
Neoplasms
Venous Thromboembolism
Neoplasm Metastasis
Cell Aggregation
171 Citations (Scopus)

Fluid biopsy in patients with metastatic prostate, pancreatic and breast cancers

Marrinucci, D., Bethel, K., Kolatkar, A., Luttgen, M. S., Malchiodi, M., Baehring, F., Voigt, K., Lazar, D., Nieva, J., Bazhenova, L., Ko, A. H., Korn, W. M., Schram, E., Coward, M., Yang, X., Metzner, T., Lamy, R., Honnatti, M., Yoshioka, C., Kunken, J. & 4 others, Petrova, Y., Sok, D., Nelson, D. & Kuhn, P., Feb 2012, In : Physical Biology. 9, 1, 016003.

Research output: Contribution to journalArticle

Circulating Neoplastic Cells
Pancreatic Neoplasms
Prostatic Neoplasms
Breast Neoplasms
Biopsy
2010
36 Citations (Scopus)

A Toolbox for ab initio 3-D reconstructions in single-particle electron microscopy

Voss, N. R., Lyumkis, D., Cheng, A., Lau, P. W., Mulder, A., Lander, G. C., Brignole, E. J., Fellmann, D., Irving, C., Jacovetty, E. L., Leung, A., Pulokas, J., Quispe, J. D., Winkler, H., Yoshioka, C., Carragher, B. & Potter, C. S., Mar 2010, In : Journal of Structural Biology. 169, 3, p. 389-398 10 p.

Research output: Contribution to journalArticle

Macromolecular Substances
Ribosome Subunits
Workflow
Electron Microscopy
Software
26 Citations (Scopus)

Cryomesh™: A new substrate for cryo-electron microscopy

Yoshioka, C., Carragher, B. & Potter, C. S., Feb 2010, In : Microscopy and Microanalysis. 16, 1, p. 43-53 11 p.

Research output: Contribution to journalArticle

Electron microscopy
electron microscopy
grids
Electron microscopes
Substrates
112 Citations (Scopus)

Visualizing ribosome biogenesis: Parallel assembly pathways for the 30S subunit

Mulder, A., Yoshioka, C., Beck, A. H., Bunner, A. E., Milligan, R. A., Potter, C. S., Carragher, B. & Williamson, J. R., Oct 29 2010, In : Science. 330, 6004, p. 673-677 5 p.

Research output: Contribution to journalArticle

Ribosomes
Ribosome Subunits
Mass Spectrometry
Electron Microscopy
Escherichia coli
2009
403 Citations (Scopus)

Appion: An integrated, database-driven pipeline to facilitate EM image processing

Lander, G. C., Stagg, S. M., Voss, N. R., Cheng, A., Fellmann, D., Pulokas, J., Yoshioka, C., Irving, C., Mulder, A., Lau, P. W., Lyumkis, D., Potter, C. S. & Carragher, B., Apr 2009, In : Journal of Structural Biology. 166, 1, p. 95-102 8 p.

Research output: Contribution to journalArticle

Software
Databases
Computer-Assisted Image Processing
Three-Dimensional Imaging
Libraries
293 Citations (Scopus)

DoG Picker and TiltPicker: Software tools to facilitate particle selection in single particle electron microscopy

Voss, N. R., Yoshioka, C., Radermacher, M., Potter, C. S. & Carragher, B., May 2009, In : Journal of Structural Biology. 166, 2, p. 205-213 9 p.

Research output: Contribution to journalArticle

Electron Microscopy
Software
Macromolecular Substances
Transmission Electron Microscopy
Datasets
2008

Automated large scale tilt pair data collection for TEM

Yoshioka, C., Voss, N., Pulokas, J., Fellmann, D., Cheng, A., Carragher, B. & Potter, C. S., Aug 2008, In : Microscopy and Microanalysis. 14, SUPPL. 2, p. 798 1 p.

Research output: Contribution to journalArticle

59 Citations (Scopus)

Orientation and structure of the Ndc80 complex on the microtubule lattice

Wilson-Kubalek, E. M., Cheeseman, I. M., Yoshioka, C., Desai, A. & Milligan, R. A., Sep 22 2008, In : Journal of Cell Biology. 182, 6, p. 1055-1061 7 p.

Research output: Contribution to journalArticle

Microtubules
Kinetochores
Tubulin
Cryoelectron Microscopy
Crystallography
2007
29 Citations (Scopus)

Automation of random conical tilt and orthogonal tilt data collection using feature-based correlation

Yoshioka, C., Pulokas, J., Fellmann, D., Potter, C. S., Milligan, R. A. & Carragher, B., Sep 2007, In : Journal of Structural Biology. 159, 3, p. 335-346 12 p.

Research output: Contribution to journalArticle

Automation
Ice
Coloring Agents
Three-Dimensional Imaging
Calibration
2006
76 Citations (Scopus)

A lever-arm rotation drives motility of the minus-end-directed kinesin Ncd

Endres, N. F., Yoshioka, C., Milligan, R. A. & Vale, R. D., Feb 16 2006, In : Nature. 439, 7078, p. 875-878 4 p.

Research output: Contribution to journalArticle

Kinesin
Microtubules
Adenosine Triphosphate
Cryoelectron Microscopy
Myosins
45 Citations (Scopus)

Supramolecular architecture of severe acute respiratory syndrome coronavirus revealed by electron cryomicroscopy

Neuman, B. W., Adair, B. D., Yoshioka, C., Quispe, J. D., Orca, G., Kuhn, P., Milligan, R. A., Yeager, M. & Buchmeier, M. J., Aug 2006, In : Journal of Virology. 80, 16, p. 7918-7928 11 p.

Research output: Contribution to journalArticle

Cryoelectron Microscopy
Severe Acute Respiratory Syndrome
Coronavirus
Coronavirinae
ribonucleoproteins
2005
59 Citations (Scopus)

Human carbonic anhydrase III: Structural and kinetic study of catalysis and proton transfer

Duda, D. M., Tu, C., Fisher, S. Z., An, H., Yoshioka, C., Govindasamy, L., Laipis, P. J., Agbandje-McKenna, M., Silverman, D. N. & McKenna, R., Aug 2 2005, In : Biochemistry. 44, 30, p. 10046-10053 8 p.

Research output: Contribution to journalArticle

Carbonic Anhydrase III
Proton transfer
Catalysis
Protons
Kinetics
110 Citations (Scopus)

Structural and kinetic characterization of active-site histidine as a proton shuttle in catalysis by human carbonic anhydrase II

Fisher, Z., Hernandez Prada, J. A., Tu, C., Duda, D., Yoshioka, C., An, H., Govindasamy, L., Silverman, D. N. & McKenna, R., Feb 1 2005, In : Biochemistry. 44, 4, p. 1097-1105 9 p.

Research output: Contribution to journalArticle

Carbonic Anhydrase II
Catalysis
Histidine
Proton transfer
Protons
2004
22 Citations (Scopus)

Actin crystal dynamics: Structural implications for F-actin nucleation, polymerization, and branching mediated by the anti-parallel dimer

Reutzel, R., Yoshioka, C., Govindasamy, L., Yarmola, E. G., Agbandje-McKenna, M., Bubb, M. R. & McKenna, R., Jun 2004, In : Journal of Structural Biology. 146, 3, p. 291-301 11 p.

Research output: Contribution to journalArticle

Polymerization
Actins
Cell Shape
Actin Cytoskeleton
Organelles
2002
5 Citations (Scopus)

Crystallization and preliminary X-ray analysis of human carbonic anhydrase III

Duda, D. M., Yoshioka, C., Govindasamy, L., An, H., Tu, C., Silverman, D. N. & McKenna, R., 2002, In : Acta Crystallographica Section D: Biological Crystallography. 58, 5, p. 849-852 4 p.

Research output: Contribution to journalArticle

Carbonic Anhydrase III
carbonic anhydrase
His-His-His-His-His-His
Carbonic Anhydrases
X ray analysis
10 Citations (Scopus)

Kinetic analysis of multiple proton shuttles in the active site of human carbonic anhydrase

Tu, C., Qian, M., An, H., Wadhwa, N. R., Duda, D., Yoshioka, C., Pathak, Y., McKenna, R., Laipis, P. J. & Silverman, D. N., Oct 11 2002, In : Journal of Biological Chemistry. 277, 41, p. 38870-38876 7 p.

Research output: Contribution to journalArticle

Carbonic Anhydrases
Histidine
Carbonic Anhydrase III
Proton transfer
Protons