Adam Margolin

Professor

  • 10732 Citations
  • 32 h-Index
20042019
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Research Output 2004 2019

  • 10732 Citations
  • 32 h-Index
  • 59 Article
  • 11 Conference contribution
  • 2 Comment/debate
  • 1 Editorial
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Conference contribution
2018
2 Citations (Scopus)

SHIFT: Speedy histopathological-To-immunofluorescent translation of whole slide images using conditional generative adversarial networks

Burlingame, E. A., Margolin, A., Gray, J. & Chang, Y. H., Jan 1 2018, Medical Imaging 2018: Digital Pathology. SPIE, Vol. 10581. 1058105

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hematoxylin
Eosine Yellowish-(YS)
chutes
Coloring Agents
Imaging techniques
2017
1 Citation (Scopus)

Breast cancer histopathology image analysis pipeline for tumor purity estimation

Azimi, V., Chang, Y. H., Thibault, G., Smith, J., Tsujikawa, T., Kukull, B., Jensen, B., Corless, C., Margolin, A. & Gray, J., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 1137-1140 4 p. 7950717

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image analysis
Tumors
Pipelines
Breast Neoplasms
Neoplasms
6 Citations (Scopus)

Deep learning based Nucleus Classification in pancreas histological images

Chang, Y. H., Thibault, G., Madin, O., Azimi, V., Meyers, C., Johnson, B., Link, J., Margolin, A. & Gray, J., Sep 13 2017, 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Smarter Technology for a Healthier World, EMBC 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 672-675 4 p. 8036914

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pancreas
Learning
Tumors
Neoplasms
Explosions

Integrative analysis on histopathological image for identifying cellular heterogeneity

Chang, Y. H., Thibault, G., Johnson, B., Margolin, A. & Gray, J., 2017, Medical Imaging 2017: Digital Pathology. SPIE, Vol. 10140. 101400T

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Spatial Analysis
Lymphocytes
Spatial distribution
Tumors
lymphocytes

Multiplexed immunohistochemistry image analysis using sparse coding

Chang, Y. H., Tsujikawa, T., Margolin, A., Coussens, L. & Gray, J., Sep 13 2017, 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Smarter Technology for a Healthier World, EMBC 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 4046-4049 4 p. 8037744

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image analysis
Immunohistochemistry
Tissue
Biomarkers
Tumors
2016
6 Citations (Scopus)

Quantitative analysis of histological tissue image based on cytological profiles and spatial statistics

Chang, Y. H., Thibault, G., Azimi, V., Johnson, B., Jorgens, D., Link, J., Margolin, A. & Gray, J., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October. p. 1175-1178 4 p. 7590914

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Statistics
Tissue
Chemical analysis
Spatial Analysis
Hematoxylin
2015
4 Citations (Scopus)

Stepwise group sparse regression (SGSR): Gene-set-based pharmacogenomic predictive models with stepwise selection of functional priors

Jang, I. S., Dienstmann, R., Margolin, A. & Guinney, J., 2015, 20th Pacific Symposium on Biocomputing, PSB 2015. Stanford University, p. 32-43 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
Cells
Aberrations
Linear regression
Pharmacogenetics
2014
12 Citations (Scopus)

Kernelized Bayesian transfer learning

Gonen, M. & Margolin, A., 2014, Proceedings of the National Conference on Artificial Intelligence. AI Access Foundation, Vol. 3. p. 1831-1839 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tumors
Cells
Experiments
Object recognition
Gene expression
40 Citations (Scopus)

Localized data fusion for kernel k-means clustering with application to cancer biology

Gonen, M. & Margolin, A., 2014, Advances in Neural Information Processing Systems. January ed. Neural information processing systems foundation, Vol. 2. p. 1305-1313 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data fusion
Learning algorithms
Biomarkers
Bioinformatics
Computer vision
2007
68 Citations (Scopus)

Theory and limitations of genetic network inference from microarray data

Margolin, A. & Califano, A., Dec 2007, Annals of the New York Academy of Sciences. Vol. 1115. p. 51-72 22 p. (Annals of the New York Academy of Sciences; vol. 1115).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Microarrays
Information Theory
Gene Expression
Reverse Genetics
Messenger RNA
2006
26 Citations (Scopus)

Genome-wide discovery of modulators of transcriptional interactions in human B lymphocytes

Wang, K., Nemenman, I., Banerjee, N., Margolin, A. & Califano, A., 2006, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 3909 LNBI. p. 348-362 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3909 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

B Lymphocytes
Transcription factors
Lymphocytes
Modulator
Transcription Factor