Adam Margolin

Associate Professor

  • 7252 Citations
  • 28 h-Index
20042017

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  • 28 Similar Profiles
Neoplasms Medicine & Life Sciences
Genes Medicine & Life Sciences
Genome Medicine & Life Sciences
Cell Line Medicine & Life Sciences
Proteins Medicine & Life Sciences
Therapeutics Medicine & Life Sciences
B-Lymphocytes Medicine & Life Sciences
Tumors Chemical Compounds

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Research Output 2004 2017

  • 7252 Citations
  • 28 h-Index
  • 52 Article
  • 10 Conference contribution
  • 1 Comment/debate
  • 1 Editorial

A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines

Gönen, M. , Weir, B. A. , Cowley, G. S. , Vazquez, F. , Guan, Y. , Jaiswal, A. , Karasuyama, M. , Uzunangelov, V. , Wang, T. , Tsherniak, A. , Howell, S. , Marbach, D. , Hoff, B. , Norman, T. C. , Airola, A. , Bivol, A. , Bunte, K. , Carlin, D. , Chopra, S. , Deran, A. & 25 others Ellrott, K., Gopalacharyulu, P., Graim, K., Kaski, S., Khan, S. A., Newton, Y., Ng, S., Pahikkala, T., Paull, E., Sokolov, A., Tang, H., Tang, J., Wennerberg, K., Xie, Y., Zhan, X., Zhu, F., Aittokallio, T., Mamitsuka, H., Stuart, J. M., Boehm, J. S., Root, D. E., Xiao, G., Stolovitzky, G., Hahn, W. C. & Margolin, A. A. 2017 (Accepted/In press) In : Cell Systems.

Research output: Research - peer-reviewArticle

Cell Line
Genes
Neoplasms
Benchmarking
Datasets
1 Citations

Breast cancer histopathology image analysis pipeline for tumor purity estimation

Azimi, V., Chang, Y. H., Thibault, G., Smith, J., Tsujikawa, T., Kukull, B., Jensen, B., Corless, C., Margolin, A. & Gray, J. W. Jun 15 2017 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 1137-1140 4 p. 7950717

Research output: ResearchConference contribution

Image analysis
Tumors
Pipelines
Breast Neoplasms
Neoplasms

Chromatin and Transcriptional Analysis of Mesoderm Progenitor Cells Identifies HOPX as a Regulator of Primitive Hematopoiesis

Palpant, N. J., Wang, Y., Hadland, B., Zaunbrecher, R. J., Redd, M., Jones, D., Pabon, L., Jain, R., Epstein, J., Ruzzo, W. L., Zheng, Y., Bernstein, I., Margolin, A. & Murry, C. E. Aug 15 2017 In : Cell Reports. 20, 7, p. 1597-1608 12 p.

Research output: Research - peer-reviewArticle

Hematopoiesis
Mesoderm
Chromatin
Stem Cells
Endothelial Cells
12 Citations

CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer

Griffith, M. , Spies, N. C. , Krysiak, K. , McMichael, J. F. , Coffman, A. C. , Danos, A. M. , Ainscough, B. J. , Ramirez, C. A. , Rieke, D. T. , Kujan, L. , Barnell, E. K. , Wagner, A. H. , Skidmore, Z. L. , Wollam, A. , Liu, C. J. , Jones, M. R. , Bilski, R. L. , Lesurf, R. , Feng, Y. Y. , Shah, N. M. & 25 others Bonakdar, M., Trani, L., Matlock, M., Ramu, A., Campbell, K. M., Spies, G. C., Graubert, A. P., Gangavarapu, K., Eldred, J. M., Larson, D. E., Walker, J. R., Good, B. M., Wu, C., Su, A. I., Dienstmann, R., Margolin, A. A., Tamborero, D., Lopez-Bigas, N., Jones, S. J. M., Bose, R., Spencer, D. H., Wartman, L. D., Wilson, R. K., Mardis, E. R. & Griffith, O. L. Jan 31 2017 In : Nature Genetics. 49, 2, p. 170-174 5 p.

Research output: Research - peer-reviewComment/debate

Deep learning based Nucleus Classification in pancreas histological images

Chang, Y. H., Thibault, G., Madin, O., Azimi, V., Meyers, C., Johnson, B., Link, J., Margolin, A. & Gray, J. W. Sep 13 2017 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Smarter Technology for a Healthier World, EMBC 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 672-675 4 p. 8036914

Research output: ResearchConference contribution

Pancreas
Learning
Neoplasms
Deep learning
Tumors