Adam Margolin

Associate Professor

  • 7626 Citations
  • 28 h-Index

Fingerprint Fingerprint is based on mining the text of the persons scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.

  • 2 Similar Profiles
Neoplasms Medicine & Life Sciences
Genome Medicine & Life Sciences
Genes Chemical Compounds
Crowdsourcing Medicine & Life Sciences
Gene Regulatory Networks Medicine & Life Sciences
Genomics Medicine & Life Sciences
Cell Line Medicine & Life Sciences
Transcription Factors Medicine & Life Sciences

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Research Output 2004 2018

  • 7626 Citations
  • 28 h-Index
  • 53 Article
  • 10 Conference contribution
  • 1 Comment/debate
  • 1 Editorial

Germline contamination and leakage in whole genome somatic single nucleotide variant detection

Sendorek, D. H., Caloian, C., Ellrott, K., Bare, J. C., Yamaguchi, T. N., Ewing, A. D., Houlahan, K. E., Norman, T. C., Margolin, A. A., Stuart, J. M. & Boutros, P. C. Jan 31 2018 In : BMC Bioinformatics. 19, 1, 28

Research output: Contribution to journalArticle


A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines

Gönen, M. , Weir, B. A. , Cowley, G. S. , Vazquez, F. , Guan, Y. , Jaiswal, A. , Karasuyama, M. , Uzunangelov, V. , Wang, T. , Tsherniak, A. , Howell, S. , Marbach, D. , Hoff, B. , Norman, T. C. , Airola, A. , Bivol, A. , Bunte, K. , Carlin, D. , Chopra, S. , Deran, A. & 25 others Ellrott, K., Gopalacharyulu, P., Graim, K., Kaski, S., Khan, S. A., Newton, Y., Ng, S., Pahikkala, T., Paull, E., Sokolov, A., Tang, H., Tang, J., Wennerberg, K., Xie, Y., Zhan, X., Zhu, F., Aittokallio, T., Mamitsuka, H., Stuart, J. M., Boehm, J. S., Root, D. E., Xiao, G., Stolovitzky, G., Hahn, W. C. & Margolin, A. A. 2017 (Accepted/In press) In : Cell Systems.

Research output: Contribution to journalArticle

Cell Line
1 Citations

Breast cancer histopathology image analysis pipeline for tumor purity estimation

Azimi, V., Chang, Y. H., Thibault, G., Smith, J., Tsujikawa, T., Kukull, B., Jensen, B., Corless, C., Margolin, A. & Gray, J. W. Jun 15 2017 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 1137-1140 4 p. 7950717

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image analysis
Breast Neoplasms
1 Citations

Chromatin and Transcriptional Analysis of Mesoderm Progenitor Cells Identifies HOPX as a Regulator of Primitive Hematopoiesis

Palpant, N. J., Wang, Y., Hadland, B., Zaunbrecher, R. J., Redd, M., Jones, D., Pabon, L., Jain, R., Epstein, J., Ruzzo, W. L., Zheng, Y., Bernstein, I., Margolin, A. & Murry, C. E. Aug 15 2017 In : Cell Reports. 20, 7, p. 1597-1608 12 p.

Research output: Contribution to journalArticle

Stem Cells
Endothelial cells
17 Citations

CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer

Griffith, M. , Spies, N. C. , Krysiak, K. , McMichael, J. F. , Coffman, A. C. , Danos, A. M. , Ainscough, B. J. , Ramirez, C. A. , Rieke, D. T. , Kujan, L. , Barnell, E. K. , Wagner, A. H. , Skidmore, Z. L. , Wollam, A. , Liu, C. J. , Jones, M. R. , Bilski, R. L. , Lesurf, R. , Feng, Y. Y. , Shah, N. M. & 25 others Bonakdar, M., Trani, L., Matlock, M., Ramu, A., Campbell, K. M., Spies, G. C., Graubert, A. P., Gangavarapu, K., Eldred, J. M., Larson, D. E., Walker, J. R., Good, B. M., Wu, C., Su, A. I., Dienstmann, R., Margolin, A. A., Tamborero, D., Lopez-Bigas, N., Jones, S. J. M., Bose, R., Spencer, D. H., Wartman, L. D., Wilson, R. K., Mardis, E. R. & Griffith, O. L. Jan 31 2017 In : Nature Genetics. 49, 2, p. 170-174 5 p.

Research output: Contribution to journalComment/debate

Knowledge Bases