Adam Margolin

Associate Professor

  • 8472 Citations
  • 28 h-Index
20042018
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  • 4 Similar Profiles
Neoplasms Medicine & Life Sciences
Genome Medicine & Life Sciences
Genes Chemical Compounds
Crowdsourcing Medicine & Life Sciences
Gene Regulatory Networks Medicine & Life Sciences
Genomics Medicine & Life Sciences
Tumors Engineering & Materials Science
Transcription factors Engineering & Materials Science

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Research Output 2004 2018

  • 8472 Citations
  • 28 h-Index
  • 55 Article
  • 10 Conference contribution
  • 1 Comment/debate
  • 1 Editorial

Germline contamination and leakage in whole genome somatic single nucleotide variant detection

Sendorek, D. H., Caloian, C., Ellrott, K., Bare, J. C., Yamaguchi, T. N., Ewing, A. D., Houlahan, K. E., Norman, T. C., Margolin, A. A., Stuart, J. M. & Boutros, P. C. Jan 31 2018 In : BMC Bioinformatics. 19, 1, 28

Research output: Contribution to journalArticle

Nucleotides
Contamination
Leakage
Genome
Genes

Pan-cancer transcriptional signatures predictive of oncogenic mutations reveal that Fbw7 regulates cancer cell oxidative metabolism

Davis, R. J., Gönen, M., Margineantu, D. H., Handeli, S., Swanger, J., Hoellerbauer, P., Paddison, P. J., Gu, H., Raftery, D., Grim, J. E., Hockenbery, D. M., Margolin, A. A. & Clurman, B. E. May 22 2018 In : Proceedings of the National Academy of Sciences of the United States of America. 115, 21, p. 5462-5467 6 p.

Research output: Contribution to journalArticle

Mutation
Neoplasms
Ubiquitin-Protein Ligases
Mitochondrial Genes
Atlases

Population-level distribution and putative immunogenicity of cancer neoepitopes

Wood, M. A., Paralkar, M., Paralkar, M. P., Nguyen, A., Struck, A. J., Ellrott, K., Margolin, A., Nellore, A. & Thompson, R. F. Apr 13 2018 In : BMC Cancer. 18, 1, 414

Research output: Contribution to journalArticle

Demography
Peptides
Neoplasms
Genome
Atlases

A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines

Gönen, M. , Weir, B. A. , Cowley, G. S. , Vazquez, F. , Guan, Y. , Jaiswal, A. , Karasuyama, M. , Uzunangelov, V. , Wang, T. , Tsherniak, A. , Howell, S. , Marbach, D. , Hoff, B. , Norman, T. C. , Airola, A. , Bivol, A. , Bunte, K. , Carlin, D. , Chopra, S. , Deran, A. & 25 others Ellrott, K., Gopalacharyulu, P., Graim, K., Kaski, S., Khan, S. A., Newton, Y., Ng, S., Pahikkala, T., Paull, E., Sokolov, A., Tang, H., Tang, J., Wennerberg, K., Xie, Y., Zhan, X., Zhu, F., Aittokallio, T., Mamitsuka, H., Stuart, J. M., Boehm, J. S., Root, D. E., Xiao, G., Stolovitzky, G., Hahn, W. C. & Margolin, A. A. 2017 (Accepted/In press) In : Cell Systems.

Research output: Contribution to journalArticle

Benchmarking
Cell Line
Genes
Neoplasms
Publications
1 Citations

Breast cancer histopathology image analysis pipeline for tumor purity estimation

Azimi, V., Chang, Y. H., Thibault, G., Smith, J., Tsujikawa, T., Kukull, B., Jensen, B., Corless, C., Margolin, A. & Gray, J. W. Jun 15 2017 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 1137-1140 4 p. 7950717

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image analysis
Tumors
Pipelines
Breast Neoplasms
Neoplasms