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Conference article
2020

A query taxonomy describes performance of patient-level retrieval from electronic health record data

Chamberlin, S. R., Bedrick, S. D., Cohen, A. M., Wang, Y., Wen, A., Liu, S., Liu, H. & Hersh, W. R., Jan 1 2020, In : CEUR Workshop Proceedings. 2551, p. 27-33 7 p.

Research output: Contribution to journalConference article

2018

Development and validation of Portable Automated Rapid Testing (PART) measures for auditory research

Gallun, F. J., Seitz, A., Eddins, D. A., Molis, M. R., Stavropoulos, T., Jakien, K. M., Kampel, S. D., Diedesch, A. C., Hoover, E. C., Bell, K., Souza, P. E., Sherman, M., Calandruccio, L., Xue, G., Taleb, N., Sebena, R. & Srinivasan, N., 2018, In : Proceedings of Meetings on Acoustics. 33, 1, 050002.

Research output: Contribution to journalConference article

3 Scopus citations

UIC/OHSU CLEF 2018 Task 2 diagnostic test accuracy ranking using publication type cluster similarity measures

Cohen, A. & Smalheiser, N. R., Jan 1 2018, In : CEUR Workshop Proceedings. 2125

Research output: Contribution to journalConference article

1 Scopus citations
2017

A simple algorithm for ventilation detection in the capnography signal during cardiopulmonary resuscitation

Leturiondo, M., Ruiz, J., De Gauna, S. R., González-Otero, D. M., Bastida, J. M. & Daya, M. R., Jan 1 2017, In : Computing in Cardiology. 44, p. 1-4 4 p.

Research output: Contribution to journalConference article

2 Scopus citations

Closed-loop adaptive filtering for supressing chest compression oscillations in the capnogram during cardiopulmonary resuscitation

Leturiondo, M., Gutierrez, J. J., De Gauna, S. R., Plaza, S., Veintemillas, J. F. & Daya, M. R., Jan 1 2017, In : Computing in Cardiology. 44, p. 1-4 4 p.

Research output: Contribution to journalConference article

Open-loop adaptive filtering for suppressing chest compression oscillations in the capnogram during cardiopulmonary resuscitation

Leturiondo, M., Ruiz, J., Gutiérrez, J. J., Leturiondo, L. A., Russell, J. K. & Daya, M. R., Jan 1 2017, In : Computing in Cardiology. 44, p. 1-4 4 p.

Research output: Contribution to journalConference article

SUMMARY OF THE PORTLAND AEROSOL CHARACTERIZATION STUDY (PACS).

Cooper, J. A., Watson, J. G. & Huntzicker, J. J., Jan 1 2017, In : Proceedings, Annual Meeting - Air Pollution Control Association. 2

Research output: Contribution to journalConference article

1 Scopus citations
2014

Biological X-ray fluorescence microscopy: Advances and unique opportunities

Vogt, S., Gleber, S. C., Jin, Q., Chen, S., Finney, L., Jacobsen, C., Ralle, M., Fahrni, C. & Mustafi, D., Aug 1 2014, In : Microscopy and Microanalysis. 20, 3, p. 1306-1307 2 p.

Research output: Contribution to journalConference article

Challenges in secondary analysis of high throughput screening data

Blucher, A. S. & McWeeney, S. K., Jan 1 2014, In : Pacific Symposium on Biocomputing. p. 114-124 11 p.

Research output: Contribution to journalConference article

3 Scopus citations

Comparison of time and frequency domain methods for the feedback on chest compression rate

González-Otero, D. M., Alonso, E., Ruiz, J., De Gauna, S. R., Aramendi, E., Ayala, U., Russel, J. K. & Daya, M., Jan 1 2014, In : Computing in Cardiology. 41, January, p. 1101-1104 4 p., 7043239.

Research output: Contribution to journalConference article

Empirical mode decomposition for chest compression and ventilation detection in cardiac arrest

Alonso, E., Aramendi, E., González-Otero, D., Ayala, U., Daya, M. & Russell, J. K., Jan 1 2014, In : Computing in Cardiology. 41, January, p. 17-20 4 p., 7042968.

Research output: Contribution to journalConference article

1 Scopus citations

Ga+ FIB milling and measurement of FIB damage in sapphire

Van Leer, B., Cheng, H. & Riesterer, J., Aug 1 2014, In : Microscopy and Microanalysis. 20, 3, p. 346-347 2 p.

Research output: Contribution to journalConference article

Open Access
1 Scopus citations

Ga+ Ions and Xe+ plasma: Complementary FIBs for resin-embedded life science sample analyses

Riesterer, J. L. & Kelley, R., Aug 1 2014, In : Microscopy and Microanalysis. 20, 3, p. 332-333 2 p.

Research output: Contribution to journalConference article

Open Access

Localized data fusion for kernel k-means clustering with application to cancer biology

Gönen, M. & Margolin, A. A., Jan 1 2014, In : Advances in Neural Information Processing Systems. 2, January, p. 1305-1313 9 p.

Research output: Contribution to journalConference article

53 Scopus citations

Rapid and sensitive detection of nano-fluidically trapped protein biomarkers

Shanmugam, N. R., Selvam, A. P., Barrett, T. W., Kazmierczak, S. & Prasad, S., Jan 1 2014, In : Materials Research Society Symposium Proceedings. 1686

Research output: Contribution to journalConference article

ResLog plots: A new metric for the quality of cryo-EM reconstructions

Stagg, S. M., Noble, A. J., Spilman, M. & Chapman, M., Aug 1 2014, In : Microscopy and Microanalysis. 20, 3, p. 1254-1255 2 p.

Research output: Contribution to journalConference article

2013

Classification of tumor histology via morphometric context

Chang, H., Borowsky, A., Spellman, P. & Parvin, B., 2013, In : Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. p. 2203-2210 8 p., 6619130.

Research output: Contribution to journalConference article

30 Scopus citations

Exploring the factors predictive of informational masking in a speech recognition task

Gallun, F. J. & Diedesch, A. C., Jun 19 2013, In : Proceedings of Meetings on Acoustics. 19, 060145.

Research output: Contribution to journalConference article

Open Access
2 Scopus citations

Overview of the ImageCLEF 2013 medical tasks

De Herrera, A. G. S., Kalpathy-Cramer, J., Fushman, D. D., Antani, S. & Müller, H., Jan 1 2013, In : CEUR Workshop Proceedings. 1179

Research output: Contribution to journalConference article

12 Scopus citations
2012

Data-driven graph reconstruction using compressive sensing

Chang, Y. H. & Tomlin, C., Dec 1 2012, In : Proceedings of the IEEE Conference on Decision and Control. p. 1035-1040 6 p., 6426447.

Research output: Contribution to journalConference article

10 Scopus citations

Overview of the ImageCLEF 2012 medical image retrieval and classiFIcation tasks

Müller, H., De Herrera, A. G. S., Kalpathy-Cramer, J., Fushman, D. D., Antani, S. & Eggel, I., Jan 1 2012, In : CEUR Workshop Proceedings. 1178

Research output: Contribution to journalConference article

27 Scopus citations
2011
Open Access

A dedicated small animal proton beam delivery system for AMD research

Bednarz, B., Mackie, T. R., Albert, D. M., Polans, A. S. & Sheibani, N., Dec 1 2011, In : Transactions of the American Nuclear Society. 105, p. 51-52 2 p.

Research output: Contribution to journalConference article

A simulation framework to investigate in vitro viral infection dynamics

Bankhead, A., Mancini, E., Sims, A. C., Baric, R. S., Mcweeney, S. & Sloot, P. M. A., 2011, In : Procedia Computer Science. 4, p. 1798-1807 10 p.

Research output: Contribution to journalConference article

Open Access
2 Scopus citations

Overview of the CLEF 2011 medical image classification and retrieval tasks

Kalpathy-Cramer, J., Muller, H., Bedrick, S., Eggel, I., De Herrera, A. G. S. & Tsikrika, T., Jan 1 2011, In : CEUR Workshop Proceedings. 1177

Research output: Contribution to journalConference article

17 Scopus citations
2010

Improving retrieval using external annotations: OHSU at imageCLEF 2010

Bedrick, S. & Kalpathy-Cramer, J., Jan 1 2010, In : CEUR Workshop Proceedings. 1176

Research output: Contribution to journalConference article

1 Scopus citations

Overview of the CLEF 2010 medical image retrieval track

Müller, H., Kalpathy-Cramer, J., Eggel, I., Bedrick, S., Reisetter, J., Kahn, C. E. & Hersh, W., Jan 1 2010, In : CEUR Workshop Proceedings. 1176

Research output: Contribution to journalConference article

16 Scopus citations
2009

3D in vivo swept source endoscopic OCT based on rigid GRIN lens rod probe

Liu, G., Xie, T., Zhang, J., Peavy, G. M., Brenner, M. & Chen, Z., May 5 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7168, 716812.

Research output: Contribution to journalConference article

Characterization of dental composite curing kinetics using dynamic light scattering

Wells-Gray, E. M., Kirkpatrick, S. J. & Sakaguchi, R. L., Jun 22 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7176, 717605.

Research output: Contribution to journalConference article

Characterizing light propagation in bone for photodynamic therapy ofosteosarcoma

Rossi, V. M., Gustafson, S. B. & Jacques, S. L., Jun 22 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7166, 71660I.

Research output: Contribution to journalConference article

6 Scopus citations

Comparing 2-D screen projections to 1-D goniometric measurements in scattering studies of surface roughness

Jones, L. R. & Jacques, S. L., May 5 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7175, 71750E.

Research output: Contribution to journalConference article

Generalized fokker-planck models of light propagation in layered media

Phillips, K. G. & Jacques, S. L., May 5 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7175, 71751A.

Research output: Contribution to journalConference article

In-vivo office-based dynamic imaging of vocal cords in awake patients with swept-source optical coherence tomography

Yu, L., Liu, G., Rubinstein, M., Saidi, A., Guo, S., Wong, B. J. F. & Chen, Z., Jun 8 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7161, 716126.

Research output: Contribution to journalConference article

1 Scopus citations

Multimodal medical image retrieval improving precision at image CLEF 2009

Radhouani, S., Kalpathy-Cramer, J., Bedrick, S., Bakke, B. & Hersh, W., Jan 1 2009, In : CEUR Workshop Proceedings. 1175

Research output: Contribution to journalConference article

2 Scopus citations

Office-based laryngeal maging in awake patients with swept-source optical coherence tomography

Yu, L., Liu, G., Guo, S., Wong, B. J. F. & Chen, Z., May 5 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7168, 71682A.

Research output: Contribution to journalConference article

Optically characterizing collagen gels made with different cell types

Levitz, D., Choudhury, N., Vartanian, K., Hinds, M. T., Hanson, S. R. & Jacques, S. L., Jun 1 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7179, 717905.

Research output: Contribution to journalConference article

1 Scopus citations

Overview of the CLEF 2009 medical image retrieval track

Müller, H., Kalpathy-Cramer, J., Eggel, I., Bedrick, S., Radhouani, S., Bakke, B., Kahn, C. E. & Hersh, W., Jan 1 2009, In : CEUR Workshop Proceedings. 1175

Research output: Contribution to journalConference article

15 Scopus citations

Quantitative phase evaluation of dynamic changes on the cell membrane during laser microsurgery

Yu, L., Mohanty, S., Liu, G., Genc, S., Kim, M. K., Chen, Z. & Berns, M. W., Jun 1 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7182, 718210.

Research output: Contribution to journalConference article

1 Scopus citations

Rotational second harmonic generation endoscopy with 1μm fiber laser system

Liu, G., Xie, T., Yu, L., Su, J., Tomov, I. V., Wang, Q., Rao, B., Zhang, J. & Chen, Z., May 5 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7172, 71720O.

Research output: Contribution to journalConference article

3 Scopus citations

The effect of wavelength on optical properties extracted from images of engineered tissue

Levitz, D., Phillips, K. G., An, L., Truffer, F., Samatham, R., Choudhury, N., Hinds, M. T., Hanson, S. R. & Jacques, S. L., Jun 1 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7179, 717906.

Research output: Contribution to journalConference article

The impacts of age and absolute threshold on binaural lateralization

Gallun, F. J., Diedesch, A. & Engelking, E., Dec 1 2009, In : Proceedings of Meetings on Acoustics. 6, 050005.

Research output: Contribution to journalConference article

Open Access
1 Scopus citations
2008

Alternative strategies for production of PET radionuclides, invited

Krohn, K. A. & Link, J. M., Nov 7 2008, In : Transactions of the American Nuclear Society. 98, 1 p.

Research output: Contribution to journalConference article

Multimodal medical image retrieval: OHSU at ImageCLEF 2008

Kalpathy-Cramer, J., Bedrick, S., Hatt, W. & Hersh, W., 2008, In : CEUR Workshop Proceedings. 1174

Research output: Contribution to journalConference article

1 Scopus citations

Overview of the ImageCLEFmed 2008 medical image retrieval task

Müller, H., Kalpathy-Cramer, J., Kahn, C. E., Hatt, W., Bedrick, S. & Hersh, W., Jan 1 2008, In : CEUR Workshop Proceedings. 1174

Research output: Contribution to journalConference article

4 Scopus citations

PET strategies to select patients for experimental cancer therapy, invited

Krohn, K. A., Link, J. M., Mankoff, D. M., O'Sullivan, F., Rajendran, J. G., Spence, A. M., Tait, J. F. & Eary, J. F., 2008, In : Transactions of the American Nuclear Society. 98, 1 p.

Research output: Contribution to journalConference article

2007

Medical image retrieval and automatic annotation: OHSU at ImageCLEF 2007

Kalpathy-Cramer, J. & Hersh, W., Jan 1 2007, In : CEUR Workshop Proceedings. 1173

Research output: Contribution to journalConference article

1 Scopus citations

Overview of the ImageCLEF 2007 medical retrieval and annotation tasks

Müller, H., Deselaers, T., Kim, E., Kalpathy-Cramer, J., Deserno, T. M. & Hersh, W., Jan 1 2007, In : CEUR Workshop Proceedings. 1173

Research output: Contribution to journalConference article

29 Scopus citations

Semi-supervised clustering with pairwise constraints: A discriminative approach

Lu, Z. & Leen, T. K., Dec 1 2007, In : Journal of Machine Learning Research. 2, p. 299-306 8 p.

Research output: Contribution to journalConference article

16 Scopus citations

The OHSU biomedical question answering system framework

Cohen, A. M., Yang, J., Fisher, S., Roark, B. & Hersh, W. R., Dec 1 2007, In : NIST Special Publication.

Research output: Contribution to journalConference article

1 Scopus citations