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2011

Cardiac motion estimation from 3D echocardiography with spatiotemporal regularization

Zhang, Z., Song, X. & Sahn, D. J., Jun 2 2011, Functional Imaging and Modeling of the Heart - 6th International Conference, FIMH 2011, Proceedings. p. 350-358 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6666 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Changes in biomechanical environment of cardiac cells in chick embryos after cardiac outflow tract banding

Liu, A., Thornburg, K., Wang, R. & Rugonyi, S., Dec 1 2011, ASME 2011 Summer Bioengineering Conference, SBC 2011. PARTS A AND B ed. p. 363-364 2 p. (ASME 2011 Summer Bioengineering Conference, SBC 2011; no. PARTS A AND B).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Characterizing the performance limits of high speed image triage using Bayesian search theory

Mathan, S., Hild, K., Huang, Y. & Pavel, M., Jul 19 2011, Foundations of Augmented Cognition: Directing the Future of Adaptive Systems - 6th International Conference, FAC 2011, Held as Part of HCI International 2011, Proceedings. p. 95-103 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6780 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Classification of lying position using load cells under the bed

Beattie, Z. T., Hagen, C. C. & Hayes, T. L., 2011, 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011. p. 474-477 4 p. 6090068. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

18 Scopus citations

Combining data sources nonlinearly for cell nucleus classification of renal cell carcinoma

Gönen, M., Ulaş, A., Schüffler, P., Castellani, U. & Murino, V., 2011, Similarity-Based Pattern Recognition - First International Workshop, SIMBAD 2011, Proceedings. p. 250-260 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7005 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Context information significantly improves brain computer interface performance - A case study on text entry using a language model assisted BCI

Orhan, U., Erdogmus, D., Hild, K. E., Roark, B., Oken, B. & Fried-Oken, M., 2011, Conference Record of the 45th Asilomar Conference on Signals, Systems and Computers, ASILOMAR 2011. p. 132-136 5 p. 6189970. (Conference Record - Asilomar Conference on Signals, Systems and Computers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Defining the players in higher-order networks: Predictive modeling for reverse engineering functional influence networks

McDermott, J. E., Archuleta, M., Stevens, S. L., Stenzel-Poore, M. P. & Sanfilippo, A., 2011, Pacific Symposium on Biocomputing 2011, PSB 2011. p. 314-325 12 p. (Pacific Symposium on Biocomputing 2011, PSB 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

11 Scopus citations

Depth-resolved optical imaging of hemodynamic response in mouse brain within microcirculatory beds

Jia, Y., Nettleton, R., Rosenberg, M., Boudreau, E. & Wang, R. K., Apr 14 2011, Dynamics and Fluctuations in Biomedical Photonics VIII. 789812. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7898).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Development of a fully automated closed loop artificial pancreas control system with dual pump delivery of insulin and glucagon

Jacobs, P. G., Youssef, J. E., Castle, J. R., Engle, J. M., Branigan, D. L., Johnson, P., Massoud, R., Kamath, A. & Ward, W. K., Dec 26 2011, 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011. p. 397-400 4 p. 6090127. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

16 Scopus citations

Dual angle scan protocol with Doppler optical coherence tomography for retinal blood flow measurement

Tan, O., Wang, Y. & Huang, D., May 13 2011, Medical Imaging 2011: Computer-Aided Diagnosis. 79633X. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7963).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dynamic multi-bed FDG PET imaging: Feasibility and optimization

Karakatsanis, N. A., Lodge, M. A., Zhou, Y., Mhlanga, J., Chaudhry, M. A., Tahari, A. K., Segars, W. P., Wahl, R. L. & Rahmim, A., Jan 1 2011, 2011 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2011. Institute of Electrical and Electronics Engineers Inc., p. 3863-3870 8 p. 6153735. (IEEE Nuclear Science Symposium Conference Record).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

20 Scopus citations

Effect of blood vessel diameter on relative blood flow estimate in Doppler optical coherence tomography algorithms

Tokayer, J. & Huang, D., Apr 12 2011, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XV. 78892X. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7889).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Effect of clearing agents on scattering coefficient and anisotropy of scattering of dermisstudied by reflectance confocal microscopy

Jacques, S. L., Samatham, R. & Phillips, K. G., Mar 31 2011, Biomedical Applications of Light Scattering V. 790706. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7907).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

EmbedRF position tracking and mobility assessment system: A low-power and low-cost system for passive assessment of patient health in a home health-care setting

Jacobs, P. G., Paul, A. S. & Wan, E. A., Dec 1 2011, 24th International Technical Meeting of the Satellite Division of the Institute of Navigation 2011, ION GNSS 2011. p. 1499-1506 8 p. (24th International Technical Meeting of the Satellite Division of the Institute of Navigation 2011, ION GNSS 2011; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Fiber-based combined optical coherence and multiphoton microscopy

Liu, G. & Chen, Z., May 2 2011, Multimodal Biomedical Imaging VI. 78920A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7892).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Fusion with language models improves spelling accuracy for ERP-based brain computer interface spellers

Orhan, U., Erdogmus, D., Roark, B., Purwar, S., Hild, K. E., Oken, B., Nezamfar, H. & Fried-Oken, M., 2011, 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011. p. 5774-5777 4 p. 6091429. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

25 Scopus citations

High sensitive volumetric imaging of renal microcirculation in vivo using Ultrahigh Sensitive Optical Microangiography

Zhi, Z., Jung, Y., Jia, Y., An, L. & Wang, R. K., Apr 14 2011, Dynamics and Fluctuations in Biomedical Photonics VIII. 789816. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7898).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

High speed swept source based on polygon-scanner filter and Fox-Smith cavity

Wang, P., Zhang, J., Liu, G. & Chen, Z., 2011, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XV. 78892Q. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7889).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Imaging organ of Corti vibration using Fourier-domain OCT

Choudhury, N., Chen, F., Fridberger, A., Zha, D., Jacques, S. L., Wang, R. K. & Nuttall, A. L., Dec 12 2011, What Fire is in Mine Ears: Progress in Auditory Biomechanics - Proceedings of the 11th International Mechanics of Hearing Workshop. p. 391-395 5 p. (AIP Conference Proceedings; vol. 1403).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Imaging vibration of the cochlear partition of an excised guinea pig cochlea using phase-sensitive Fourier domain optical coherence tomography

Choudhury, N., Zeng, Y., Fridberger, A., Chen, F., Zha, D., Nuttall, A. L. & Wang, R. K., 2011, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XV. 788930. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7889).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Indoor localization using pedestrian dead reckoning updated with RFID-based fiducials

Samuel, H., Connell, S., Milligan, I., Austin, D., Hayes, T. L. & Chiang, P., Dec 26 2011, 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011. p. 7598-7601 4 p. 6091873. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

34 Scopus citations

Inference of temporally evolving network dynamics with applications in biological systems

Chang, Y. H. & Tomlin, C., Dec 1 2011, 2011 50th IEEE Conference on Decision and Control and European Control Conference, CDC-ECC 2011. p. 3706-3711 6 p. 6160849. (Proceedings of the IEEE Conference on Decision and Control).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Investigation of magnetic guidance of cochlear implants

Clark, J. R., Leon, L., Warren, F. M. & Abbott, J. J., Dec 29 2011, IROS'11 - 2011 IEEE/RSJ International Conference on Intelligent Robots and Systems: Celebrating 50 Years of Robotics. p. 1321-1326 6 p. 6048142. (IEEE International Conference on Intelligent Robots and Systems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Investigation of retinal blood flow in glaucoma patients by Doppler Fourier-domain optical coherence tomography

Wang, Y., Zhang, X., Tan, O. & Huang, D., Apr 12 2011, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XV. 78890G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7889).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

In vitro photodynamic therapy of MG-63 osteosarcoma cells mediated by aminolevulinic acid

Rossi, V. M., White, B. M., Newton, M. J., Jacques, S. L. & Baugher, P. J., Apr 20 2011, Optical Methods for Tumor Treatment and Detection: Mechanisms and Techniques in Photodynamic Therapy XX. 78860T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7886).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

In vivo three-dimensional doppler variance imaging of tumor angiogenesis on chorioallantoic membrane

Qi, W., Liu, G. & Chen, Z., Apr 14 2011, Dynamics and Fluctuations in Biomedical Photonics VIII. 78980O. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7898).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Label-free in vivo optical micro-angiography imaging of cerebral capillary blood flow within meninges and cortex in mice with the skull left intact

Jia, Y. & Wang, R. K., Apr 12 2011, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XV. 788912. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7889).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Measurement of basilar membrane, reticular lamina, and tectorial membrane vibrations in the intact mouse cochlea

Ren, T. & He, W., Dec 12 2011, What Fire is in Mine Ears: Progress in Auditory Biomechanics - Proceedings of the 11th International Mechanics of Hearing Workshop. p. 423-428 6 p. (AIP Conference Proceedings; vol. 1403).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Measuring changes in activity patterns during a norovirus epidemic at a retirement community

Campbell, I. H., Austin, D., Hayes, T. L., Pavel, M., Riley, T., Mattek, N. & Kaye, J., 2011, 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011. p. 6793-6796 4 p. 6091675. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Scopus citations

Medical multimedia analysis and retrieval

Cao, Y., Kalpathy-Cramer, J. & Ünay, D., Dec 29 2011, MM'11 - Proceedings of the 2011 ACM Multimedia Conference and Co-Located Workshops. p. 617-618 2 p. (MM'11 - Proceedings of the 2011 ACM Multimedia Conference and Co-Located Workshops).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Micro-Joule pico-second range Yb 3+-doped fibre laser for medical applications in acupuncture

Alvarez-Chavez, J. A., Rivera-Manrique, S. I. & Jacques, S. L., Dec 1 2011, 22nd Congress of the International Commission for Optics: Light for the Development of the World. 801193. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Microreactor-based system for radiolabeling of biomolecules with metallic radioisotopes

Desai, A. V., Zeng, D., Wheeler, T. D., Ranganathan, D., Reichert, D. E. & Kenis, P. J. A., Dec 1 2011, 15th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2011, MicroTAS 2011. p. 1576-1578 3 p. (15th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2011, MicroTAS 2011; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Monitoring human melanocytic cell responses to piperine using multispectral imaging

Samatham, R., Phillips, K. G., Sonka, J., Yelma, A., Reddy, N., Vanka, M., Thuillier, P., Soumyanath, A. & Jacques, S., Apr 12 2011, Photonic Therapeutics and Diagnostics VII. 788309. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7883).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Monte Carlo simulation for light propagation in 3D tooth model

Fu, Y. & Jacques, S. L., Apr 29 2011, Optical Interactions with Tissue and Cells XXII. 78971N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7897).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Multiphoton endoscopy based on a mode-filtered single-mode fiber

Moon, S., Liu, G. & Chen, Z., May 5 2011, Multiphoton Microscopy in the Biomedical Sciences XI. 79032P. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7903).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Multitask learning using regularized multiple kernel learning

Gönen, M., Kandemir, M. & Kaski, S., Nov 28 2011, Neural Information Processing - 18th International Conference, ICONIP 2011, Proceedings. PART 2 ed. p. 500-509 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7063 LNCS, no. PART 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Normal and keratoconic corneal epithelial thickness mapping using Fourier-domain optical coherence tomography

Li, Y., Tan, O. & Huang, D., May 16 2011, Medical Imaging 2011: Biomedical Applications in Molecular, Structural, and Functional Imaging. 796508. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7965).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

On visually evoked potentials in eeg induced by multiple pseudorandom binary sequences for brain computer interface design

Nezamfar, H., Orhan, U., Erdogmus, D., Hild, K. E., Purwar, S., Oken, B. & Fried-Oken, M., 2011, 2011 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2011 - Proceedings. p. 2044-2047 4 p. 5946914. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations

Optical characterization and feasibility study of multifunctional polylactic-co-glycolic acid (PLGA) nanoparticles designed for photothermal optical coherence tomography

Subhash, H. M., Xie, H., Smith, J. W. & McCarty, O., Jan 1 2011, European Conference on Biomedical Optics, ECBO 2011. Optical Society of America (OSA), 809108. (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical characterization and feasibility study of multifunctional polylactic-co-glycolic acid (PLGA) nanoparticles designed for photo-thermal optical coherence tomography

Subhash, H. M., Xie, H., Smith, J. W. & McCarty, O., Aug 1 2011, Optical Coherence Tomography and Coherence Techniques V. 809108. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8091).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical micro-angiography reveals depth-resolved muscular microcirculation

Jia, Y. & Wang, R. K., Apr 14 2011, Dynamics and Fluctuations in Biomedical Photonics VIII. 789803. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7898).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optimization-based inference for temporally evolving Boolean networks with applications in biology

Chang, Y. H., Gray, J. & Tomlin, C., Sep 29 2011, Proceedings of the 2011 American Control Conference, ACC 2011. p. 4129-4134 6 p. 5991347. (Proceedings of the American Control Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Optimized doppler optical coherence tomography for choroidal capillary vasculature imaging

Liu, G., Qi, W., Yu, L. & Chen, Z., 2011, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XV. 78890J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7889).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Outer hair cell electromotility in vivo

Ramamoorthy, S. & Nuttall, A. L., Dec 12 2011, What Fire is in Mine Ears: Progress in Auditory Biomechanics - Proceedings of the 11th International Mechanics of Hearing Workshop. p. 176-178 3 p. (AIP Conference Proceedings; vol. 1403).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Perturbation theory for stochastic learning dynamics

Leen, T. K. & Friel, R., Oct 24 2011, 2011 International Joint Conference on Neural Networks, IJCNN 2011 - Final Program. p. 2031-2038 8 p. 6033476. (Proceedings of the International Joint Conference on Neural Networks).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Principal curve based semi-automatic segmentation of organs in 3D-CT

You, S., Bas, E., Ataer-Cansizoglu, E., Kalpathy-Cramer, J. & Erdogmus, D., 2011, 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011. p. 6220-6223 4 p. 6091536. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Principal curved based retinal vessel segmentation towards diagnosis of retinal diseases

You, S., Bas, E., Erdogmus, D. & Kalpathy-Cramer, J., Nov 22 2011, Proceedings - 2011 1st IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2011. p. 331-337 7 p. 6061462. (Proceedings - 2011 1st IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

14 Scopus citations

Real time diagnosis of bladder cancer with probe-based confocal laser endomicroscopy

Liu, J. J., Wu, K., Adams, W., Hsiao, S. T., Mach, K. E., Beck, A. H., Jensen, K. C. & Liao, J. C., 2011, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues IX. 79021V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7902).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Refining shape correspondence for similar objects using strain

Phan, L., Knutsen, A. K., Bayly, P. V., Rugonyi, S. & Grimm, C., 2011, Eurographics Workshop on 3D Object Retrieval, 3DOR 2011 - co-event of Eurographics 2011. Eurographics Association, p. 17-24 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Regulating energy delivery during intracardiac radiofrequency ablation using thermal strain imaging

Hyung Seo, C., Stephens, D., Cannata, J., Dentinger, A., Lin, F., Park, S., Wildes, D., Thomenius, K., Chen, P., Nguyen, T., Delarama, A., Jeong, J. S., Mahajan, A., Shivkumar, K., Oralkan, O., Sahn, D., Khuri-Yakub, P. & O'Donnell, M., Dec 1 2011, 2011 IEEE International Ultrasonics Symposium, IUS 2011. p. 1882-1885 4 p. 6293323. (IEEE International Ultrasonics Symposium, IUS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations