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2013

Change in physiological signals during mindfulness meditation

Ahani, A., Wahbeh, H., Miller, M., Nezamfar, H., Erdogmus, D. & Oken, B., 2013, 2013 6th International IEEE EMBS Conference on Neural Engineering, NER 2013. p. 1378-1381 4 p. 6696199. (International IEEE/EMBS Conference on Neural Engineering, NER).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

16 Scopus citations

Characterization of tissue histopathology via predictive sparse decomposition and spatial pyramid matching

Chang, H., Nayak, N., Spellman, P. T. & Parvin, B., 2013, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2013 - 16th International Conference, Proceedings. PART 2 ed. p. 91-98 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8150 LNCS, no. PART 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

27 Scopus citations

Classification of single-trial MEG during sentence processing for automated schizophrenia screening

Xu, T., Stephane, M. & Parhi, K. K., Dec 1 2013, 2013 6th International IEEE EMBS Conference on Neural Engineering, NER 2013. p. 363-366 4 p. 6695947. (International IEEE/EMBS Conference on Neural Engineering, NER).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Classification of tumor histopathology via sparse feature learning

Nayak, N., Chang, H., Borowsky, A., Spellman, P. & Parvin, B., Aug 22 2013, ISBI 2013 - 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro. p. 1348-1351 4 p. 6556782. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

28 Scopus citations

Contrasting the thrombotic phenotype of donor-matched endothelial outgrowth cells and endothelial cells

Glynn, J. J. & Hinds, M. T., Dec 1 2013, ASME 2013 Summer Bioengineering Conference, SBC 2013. (ASME 2013 Summer Bioengineering Conference, SBC 2013; vol. 1 A).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Determine scattering coefficient and anisotropy of scattering of murine tissues using reflectance-mode confocal microscopy

Samatham, R. & Jacques, S. L., May 28 2013, Biomedical Applications of Light Scattering VII. 85920U. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8592).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Developing a survey to assess factors that contribute to physician involvement in clinical research

Taliercio, V., Logan, J. R., Kalpathy-Cramer, J. & Oteroa, P., 2013, MEDINFO 2013 - Proceedings of the 14th World Congress on Medical and Health Informatics. 1-2 ed. IOS Press, p. 107-111 5 p. (Studies in Health Technology and Informatics; vol. 192, no. 1-2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Development and evaluation of an electronic health record configuration and customization laboratory course for clinical informatics students

Mohan, V. & Hersh, W. R., Jan 1 2013, MEDINFO 2013 - Proceedings of the 14th World Congress on Medical and Health Informatics. 1-2 ed. IOS Press, 1 p. (Studies in Health Technology and Informatics; vol. 192, no. 1-2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Digital patterning of glucose oxidase for electrochemical glucose biosensors

Herman, G. S., Durgan, C., Du, X., Arnadottir, L., Matthews, D., Klan, T., Kundu, S., Conley, J. F., Ward, K., Cargill, R., Castle, J. & Jacobs, P., Dec 1 2013, NIP 2013: 29th International Conference on Digital Printing Technologies and Digital Fabrication 2013. 1 p. (International Conference on Digital Printing Technologies).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electrode selection and other design considerations for a modular, portable single-channel EEG-augmented hearing aid

Brummer, N. B., Rawson, J. A., Grimm, M. W., Tupper, P., Miller, A. J. L., Billings, C. J. & Jacobs, P. G., Dec 1 2013, 2013 6th International IEEE EMBS Conference on Neural Engineering, NER 2013. p. 431-434 4 p. 6695964. (International IEEE/EMBS Conference on Neural Engineering, NER).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Evaluation of circumferential and longitudinal strain in a rabbit fetal heart model using 4D echocardiography

Apte, V., Tam, L., Han, A., Zhu, M., Ashraf, M., Sahn, D. J. & Zhang, Z., Nov 8 2013, Proceedings - 39th Annual Northeast Bioengineering Conference, NEBEC 2013. p. 23-24 2 p. 6574338. (Proceedings of the IEEE Annual Northeast Bioengineering Conference, NEBEC).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Expression and function of channelrhodopsin 2 in mouse outer hair cells

Chen, F., Wu, T., Wilson, T., Subhash, H., Omelchenko, I., Bateschell, M., Wang, L., Brigande, J., Jiang, Z. G. & Nuttall, A., May 28 2013, Optogenetics: Optical Methods for Cellular Control. 85860I. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8586).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Finna: A paragraph prioritization system for biocuration in the neurosciences

Ambert, K. H., Cohen, A. M., Burns, G. A. P. C., Boudreau, E. & Sonmez, K., Jan 1 2013, Discovery Informatics: AI Takes a Science-Centered View on Big Data - Papers from the AAAI Fall Symposium, Technical Report. AI Access Foundation, p. 2-7 6 p. (AAAI Fall Symposium - Technical Report; vol. FS-13-01).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hemodynamic forces regulate collagen deposition in the embryonic chicken outflow tract

Rennie, M. Y., Danilchik, M., Thornburg, K. L. & Rugonyi, S., Dec 1 2013, ASME 2013 Summer Bioengineering Conference, SBC 2013. (ASME 2013 Summer Bioengineering Conference, SBC 2013; vol. 1 A).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Increasing PS-SDOCT SNR using correlated coherent averaging

Petrie, T. C., Ramamoorthy, S., Jacques, S. L. & Nuttall, A. L., May 30 2013, Photonic Therapeutics and Diagnostics IX. 85651O. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8565).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Low-rank representation of neural activity and detection of submovements

Chang, Y. H., Chen, M., Gowda, S., Overduin, S. A., Carmena, J. M. & Tomlin, C., Jan 1 2013, 2013 IEEE 52nd Annual Conference on Decision and Control, CDC 2013. Institute of Electrical and Electronics Engineers Inc., p. 2544-2549 6 p. 6760263. (Proceedings of the IEEE Conference on Decision and Control).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Modeling emergence in neuroprotective regulatory networks

Sanfilippo, A. P., Haack, J. N., McDermott, J. E., Stevens, S. L. & Stenzel-Poore, M. P., Jan 1 2013, Complex Sciences - 2nd International Conference, COMPLEX 2012, Revised Selected Papers. Glass, K., Colbaugh, R., Tsao, J. & Ormerod, P. (eds.). Springer-Verlag, p. 291-302 12 p. (Lecture Notes of the Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering, LNICST; vol. 126 LNICST).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Modelling cerebral blood oxygenation using monte carlo XYZ-PA

Zam, A., Jacques, S. L., Alexandrov, S., Li, Y. & Leahy, M. J., Jun 12 2013, Dynamics and Fluctuations in Biomedical Photonics IX. 858013. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8580).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Optical scatter imaging as an apoptosis assay for cells undergoing ALA-mediated photodynamic therapy in vitro

Rossi, V. M., Baugher, P. J. & Jacques, S. L., May 28 2013, Biomedical Applications of Light Scattering VII. 85920O. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8592).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Patient–Clinician Communication: The Roadmap for HCI

Wilcox, L., Patel, R., Back, A., Czerwinski, M., Pratt, W., Horvitz, E. & Gorman, P., Apr 27 2013, CHI EA 2013 - Extended Abstracts on Human Factors in Computing Systems: Changing Perspectives. Beaudouin-Lafon, M., Baudisch, P. & Mackay, W. E. (eds.). Association for Computing Machinery, p. 3291-3294 4 p. (Conference on Human Factors in Computing Systems - Proceedings; vol. 2013-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations

Physicians perceptions of an educational support system integrated into an electronic health record

Borbolla, D., Gorman, P., Del Fiol, G., Mohan, V., Hersh, W., Otero, C., Luna, D. & Gonzalez Bernaldo De Quiros, F., 2013, Data and Knowledge for Medical Decision Support. IOS Press, p. 125-129 5 p. (Studies in Health Technology and Informatics; vol. 186).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Predicting emotional states of images using Bayesian multiple kernel learning

Zhang, H., Gönen, M., Yang, Z. & Oja, E., Dec 1 2013, Neural Information Processing - 20th International Conference, ICONIP 2013, Proceedings. PART 3 ed. p. 274-282 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8228 LNCS, no. PART 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Putting the tritone paradox into context: Insights from neural population decoding and human psychophysics

Englitz, B., Akram, S., David, S. V., Chambers, C., Pressnitzer, D., Depireux, D., Fritz, J. B. & Shamma, S. A., 2013, Basic Aspects of Hearing: Physiology and Perception. p. 157-164 8 p. (Advances in Experimental Medicine and Biology; vol. 787).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Quantifying the inference power of a drug screen for predictive analysis

Berlow, N., Haider, S., Pal, R. & Keller, C., Dec 1 2013, 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013 - Proceedings. p. 49-52 4 p. 6735928. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Reflective type objective based spectral-domain phase-sensitive optical coherence tomography for high-sensitive structural and functional imaging of cochlear microstructures through intact bone of an excised guinea pig cochlea

Subhash, H. M., Wang, R. K., Chen, F. & Nuttall, A. L., May 22 2013, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XVII. 85713G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8571).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Removal of ocular artifacts from EEG using learned templates

Quinn, M., Mathan, S. & Pavel, M., Oct 7 2013, Foundations of Augmented Cognition - 7th International Conference, AC 2013, Held as Part of HCI International 2013, Proceedings. p. 371-380 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8027 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Right ventricular strain analysis from 3D echocardiography by using temporally diffeomorphic motion estimation

Zhang, Z., Sahn, D. J. & Song, X., Jul 11 2013, Functional Imaging and Modeling of the Heart - 7th International Conference, FIMH 2013, Proceedings. p. 474-482 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7945 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Schizophrenia classification with single-trial MEG during language processing

Xu, T., Stephane, M. & Parhi, K. K., Jan 1 2013, Conference Record of the 47th Asilomar Conference on Signals, Systems and Computers. IEEE Computer Society, p. 354-357 4 p. 6810294. (Conference Record - Asilomar Conference on Signals, Systems and Computers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Stacked predictive sparse coding for classification of distinct regions in tumor histopathology

Chang, H., Zhou, Y., Spellman, P. & Parvin, B., 2013, Proceedings - 2013 IEEE International Conference on Computer Vision, ICCV 2013. Institute of Electrical and Electronics Engineers Inc., p. 169-176 8 p. 6751130. (Proceedings of the IEEE International Conference on Computer Vision).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

22 Scopus citations

Steady flow preconditioning of endothelial outgrowth cells on EX vivo and in vivo ePTFE grafts

Anderson, D. E. J., Glynn, J. J. & Hinds, M. T., Dec 1 2013, ASME 2013 Summer Bioengineering Conference, SBC 2013. (ASME 2013 Summer Bioengineering Conference, SBC 2013; vol. 1 A).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Turn detection and characterization with inertial sensors

Pearson, S., Mancini, M., El-Gohary, M., McNames, J. & Horak, F., Jan 1 2013, icSPORTS 2013 - Proceedings of the International Congress on Sports Science Research and Technology Support. SciTePress, p. 19-22 4 p. (icSPORTS 2013 - Proceedings of the International Congress on Sports Science Research and Technology Support).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Ultrahigh-speed ultrahigh-resolution adaptive optics: Optical coherence tomography system for in-vivo small animal retinal imaging

Jian, Y., Xu, J., Zawadzki, R. J. & Sarunic, M. V., 2013, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XVII. 85711R. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8571).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Using semantic workflows to disseminate best practices and accelerate discoveries in multi-omic data analysis

Gil, Y., McWeeney, S. & Mason, C. E., Jan 1 2013, Expanding the Boundaries of Health Informatics Using Artificial Intelligence - Papers from the 2013 AAAI Workshop, Technical Report. AI Access Foundation, p. 25-30 6 p. (AAAI Workshop - Technical Report; vol. WS-13-09).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Visual hull reconstruction for automated primate behavior observation

Ghadar, N., Zhang, X., Li, K., Erdogmus, D., Thibault, G., Bayestehtashk, A., Coleman, I. S. K. & Grant, K. A., Dec 1 2013, 2013 IEEE International Workshop on Machine Learning for Signal Processing - Proceedings of MLSP 2013. 6661922. (IEEE International Workshop on Machine Learning for Signal Processing, MLSP).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Workshop on health search and discovery: Helping users and advancing medicine

White, R. W., Yom-Tov, E., Horvitz, E., Agichtein, E. & Hersh, W., Sep 2 2013, SIGIR 2013 - Proceedings of the 36th International ACM SIGIR Conference on Research and Development in Information Retrieval. 1 p. (SIGIR 2013 - Proceedings of the 36th International ACM SIGIR Conference on Research and Development in Information Retrieval).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2012

A Bayesian multiple kernel learning framework for single and multiple output regression

Gönen, M., 2012, ECAI 2012 - 20th European Conference on Artificial Intelligence, 27-31 August 2012, Montpellier, France - Including Prestigious Applications of Artificial Intelligence (PAIS-2012) System Demonstration. IOS Press, p. 354-359 6 p. (Frontiers in Artificial Intelligence and Applications; vol. 242).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Absolute measurement of subnanometer scale vibration of cochlear partition of an excised guinea pig cochlea using spectral-domain phase-sensitive optical coherence tomography

Subhash, H. M., Choudhury, N., Jacques, S. L., Wang, R. K., Chen, F., Zha, D. & Nuttall, A. L., Jan 1 2012, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XVI. SPIE, 82131V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8213).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Accuracy and robustness of Kinect pose estimation in the context of coaching of elderly population

Obdrzalek, S., Kurillo, G., Ofli, F., Bajcsy, R., Seto, E., Jimison, H. & Pavel, M., Dec 14 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2012. p. 1188-1193 6 p. 6346149. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

228 Scopus citations

A Gaussian model for movement detection during Sleep

Adami, A. M., Adami, A. G., Hayes, T. L., Pavel, M. & Beattie, Z. T., 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2012. p. 2263-2266 4 p. 6346413. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

A localized MKL method for brain classification with known intra-class variability

Ulaş, A., Gönen, M., Castellani, U., Murino, V., Bellani, M., Tansella, M. & Brambilla, P., Nov 30 2012, Machine Learning in Medical Imaging - Third International Workshop, MLMI 2012, Held in Conjunction with MICCAI 2012, Revised Selected Papers. p. 152-159 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7588 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

A state-space model for finger tapping with applications to cognitive inference

Austin, D., Petersen, J., Jimison, H. & Pavel, M., Dec 14 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2012. p. 21-24 4 p. 6345861. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Attenuation fluctuations and local dermal reflectivity are indicators of immune cell infiltrate and epidermal hyperplasia in skin inflammation

Phillips, K. G., Wang, Y., Choudhury, N., Levitz, D., Swanzey, E., Lagowski, J., Kulesz-Martin, M. & Jacques, S., May 14 2012, Photonic Therapeutics and Diagnostics VIII. 820708. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8207).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Batch-invariant nuclear segmentation in whole mount histology sections

Chang, H., Loss, L. A., Spellman, P. T., Borowsky, A. & Parvin, B., Aug 15 2012, 2012 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012 - Proceedings. p. 856-859 4 p. 6235683. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

Bayesian efficient multiple kernel learning

Gönen, M., Oct 10 2012, Proceedings of the 29th International Conference on Machine Learning, ICML 2012. p. 1-8 8 p. (Proceedings of the 29th International Conference on Machine Learning, ICML 2012; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

49 Scopus citations

Bayesian supervised multilabel learning with coupled embedding and classification

Gönen, M., 2012, Proceedings of the 12th SIAM International Conference on Data Mining, SDM 2012. Society for Industrial and Applied Mathematics Publications, p. 367-378 12 p. (Proceedings of the 12th SIAM International Conference on Data Mining, SDM 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Cellular pattern recognition towards discrimination of normal skin from melanoma in non-invasive confocal imaging

Swerdlin, A., Simpson, E., Jacques, S. & Gareau, D. S., Jun 12 2012, Advanced Biomedical and Clinical Diagnostic Systems X. 82140C. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8214).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Chronic mitral valve leaflet growth following myocardial infarction

Rausch, M. K., Tibayan, F. A., Miller, D. C. & Kuhl, E., Dec 1 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 1015-1016 2 p. (ASME 2012 Summer Bioengineering Conference, SBC 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Clinical applications of corneal optical coherence tomography

Huang, D., Tang, M. & Li, Y., Dec 1 2012, Frontiers in Optics, FIO 2012. (Frontiers in Optics, FIO 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Clinical study of imaging skin cancer margins using polarized light Imaging

Samatham, R., Lee, K. & Jacques, S. L., May 14 2012, Photonic Therapeutics and Diagnostics VIII. 82070O. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8207).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Combining OCT and a fluorescence intensity imaging method for atherosclerosis detection

Liang, S., Saidi, A., Jing, J., Liu, G., Yin, J., Narula, J. & Chen, Z., May 14 2012, Photonic Therapeutics and Diagnostics VIII. 82073Y. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8207).

Research output: Chapter in Book/Report/Conference proceedingConference contribution