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  • Hemodynamic forces regulate collagen deposition in the embryonic chicken outflow tract

    Rennie, M. Y., Danilchik, M., Thornburg, K. L. & Rugonyi, S., Dec 1 2013, ASME 2013 Summer Bioengineering Conference, SBC 2013. (ASME 2013 Summer Bioengineering Conference, SBC 2013; vol. 1 A).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Heterodyne optical coherent tomography (HOCT) system

    Fred Holmes, J., Hunt, J. M. & Jacques, S. L., Jan 1 2006, Coherent Optical Technologies and Applications, COTA 2006. Optical Society of America, (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Heterogeneity in cancer dynamics: A convex formulation to dissect dynamic trajectories and infer LTV models of networked systems

    Dobbe, R., Chang, Y. H., Korkola, J., Gray, J. & Tomlin, C., Jul 28 2015, ACC 2015 - 2015 American Control Conference. Institute of Electrical and Electronics Engineers Inc., p. 4398-4403 6 p. 7172021. (Proceedings of the American Control Conference; vol. 2015-July).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Hierarchical Fisher kernels for longitudinal data

    Lu, Z., Leen, T. K. & Kaye, J., Dec 1 2009, Advances in Neural Information Processing Systems 21 - Proceedings of the 2008 Conference. p. 1961-1968 8 p. (Advances in Neural Information Processing Systems 21 - Proceedings of the 2008 Conference).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • How the open-source development model can improve medical software

    Yackel, T. R., Jan 1 2001, MEDINFO 2001 - Proceedings of the 10th World Congress on Medical Informatics. IOS Press, p. 68-72 5 p. (Studies in Health Technology and Informatics; vol. 84).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • Identifying best practices for clinical decision support and knowledge management in the field

    Ash, J. S., Sittig, D. F., Dykstra, R., Wright, A., McMullen, C., Richardson, J. & Middleton, B., 2010, Medinfo 2010 - Proceedings of the 13th World Congress on Medical Informatics. PART 1 ed. IOS Press, p. 806-810 5 p. (Studies in Health Technology and Informatics; vol. 160, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    29 Scopus citations
  • Implementation and evaluation of a distance learning introductory course in medical informatics

    Hersh, W., Junium, K., Mailhot, M. & Tidmarsh, P., Jan 1 2001, MEDINFO 2001 - Proceedings of the 10th World Congress on Medical Informatics. IOS Press, p. 1023-1027 5 p. (Studies in Health Technology and Informatics; vol. 84).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • Indoor localization using pedestrian dead reckoning updated with RFID-based fiducials

    Samuel, H., Connell, S., Milligan, I., Austin, D., Hayes, T. L. & Chiang, P., Dec 26 2011, 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011. p. 7598-7601 4 p. 6091873. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    38 Scopus citations
  • Information needs in primary care: A survey of rural and nonrural primary care physicians

    Gorman, P., Jan 1 2001, MEDINFO 2001 - Proceedings of the 10th World Congress on Medical Informatics. IOS Press, p. 338-342 5 p. (Studies in Health Technology and Informatics; vol. 84).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    19 Scopus citations
  • Inhomogeneous Monte Carlo simulations of dermoscopic spectroscopy

    Gareau, D. S., Li, T., Jacques, S. & Krueger, J., Apr 2 2012, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues X. 82251B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8225).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • In situ monitoring of localized shear stress and fluid flow within developing tissue constructs by Doppler optical coherence tomography

    Jia, Y., Bagnaninchi, P. O. & Wang, R. K., 2008, Optics in Tissue Engineering and Regenerative Medicine II. 68580G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6858).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Integrating computer-based health coaching into elder home care

    Jimison, H. B. & Pavel, M., Dec 1 2008, Technology and Aging. Selected Papers from the 2007 International Conference on Technology and Aging. Mihailidis, A., Boger, J., Kautz, H. & Normie, L. (eds.). p. 122-129 8 p. (Assistive Technology Research Series; vol. 21).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    8 Scopus citations
  • Integrative analysis on histopathological image for identifying cellular heterogeneity

    Chang, Y. H., Thibault, G., Johnson, B., Margolin, A. & Gray, J. W., 2017, Medical Imaging 2017: Digital Pathology. Gurcan, M. N. & Tomaszewski, J. E. (eds.). SPIE, 101400T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10140).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Intensity-based modified Doppler variance algorithm dedicated for phase instable optical coherence tomography systems

    Liu, G., Jia, W., Chou, D., Qi, W., Choi, B. & Chen, Z., 2012, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XVI. SPIE, 821315. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8213).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Investigating physician order entry in the field: Lessons learned in a multi-center study

    Ash, J., Gorman, P., Lavelle, M., Lyman, J. & Fournier, L., 2001, MEDINFO 2001 - Proceedings of the 10th World Congress on Medical Informatics. IOS Press, p. 1107-1111 5 p. (Studies in Health Technology and Informatics; vol. 84).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    24 Scopus citations
  • Investigation of magnetic guidance of cochlear implants

    Clark, J. R., Leon, L., Warren, F. M. & Abbott, J. J., 2011, IROS'11 - 2011 IEEE/RSJ International Conference on Intelligent Robots and Systems: Celebrating 50 Years of Robotics. p. 1321-1326 6 p. 6048142. (IEEE International Conference on Intelligent Robots and Systems).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Investigation of retinal blood flow in glaucoma patients by Doppler Fourier-domain optical coherence tomography

    Wang, Y., Zhang, X., Tan, O. & Huang, D., Apr 12 2011, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XV. 78890G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7889).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Investigation of the effect of hydration on dermal collagen in ex vivo human skin tissue using second harmonic generation microscopy

    Samatham, R., Wang, N. K. & Jacques, S., 2016, Photonic Therapeutics and Diagnostics XII. SPIE, Vol. 9689. 96890W

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • In vitro photodynamic therapy of MG-63 osteosarcoma cells mediated by aminolevulinic acid

    Rossi, V. M., White, B. M., Newton, M. J., Jacques, S. L. & Baugher, P. J., Apr 20 2011, Optical Methods for Tumor Treatment and Detection: Mechanisms and Techniques in Photodynamic Therapy XX. 78860T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7886).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • In vivo analysis of axonal transport in zebrafish

    Drerup, C. M. & Nechiporuk, A. V., 2016, The Neuronal Cytoskeleton, Motor Proteins, and Organelle Trafficking in the Axon, 2016. Pfister, K. K. (ed.). Academic Press Inc., p. 311-329 19 p. (Methods in Cell Biology; vol. 131).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    14 Scopus citations
  • In vivo early detection of smoke-induced airway injury using 3-dimensional swept source optical coherence tomography

    Yin, J., Liu, G., Zhang, J., Yu, L., Mahon, S., Mukai, D., Brenner, M. & Chen, Z., May 3 2010, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XIV. 755408. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7554).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • In vivo measurements of epidermal thickness by reflectance mode confocal microscopy to assess cellular proliferation induced by topical agents

    Phillips, K. G., Samatham, R., Thuillier, P. & Jacques, S. L., Jun 12 2009, Biomedical Applications of Light Scattering III. 71870S. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7187).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • In vivo three-dimensional doppler variance imaging of tumor angiogenesis on chorioallantoic membrane

    Qi, W., Liu, G. & Chen, Z., Apr 14 2011, Dynamics and Fluctuations in Biomedical Photonics VIII. 78980O. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7898).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Just what the doctor ordered? The role of cognitive decision support systems in clinical decision-making & patient safety

    Lazzara, E. H., Weaver, S. J., Karsh, B. T., Guerlain, S., Metcalf, D., Marquard, J. L. & Gorman, P., Dec 1 2010, 54th Human Factors and Ergonomics Society Annual Meeting 2010, HFES 2010. p. 826-829 4 p. (Proceedings of the Human Factors and Ergonomics Society; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Kernelized Bayesian transfer learning

    Gönen, M. & Margolin, A. A., Jan 1 2014, Proceedings of the National Conference on Artificial Intelligence. AI Access Foundation, p. 1831-1839 9 p. (Proceedings of the National Conference on Artificial Intelligence; vol. 3).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    19 Scopus citations
  • Large-scale image database triage via EEG evoked responses

    Huang, Y., Erdogmus, D., Mathan, S. & Pavel, M., Sep 16 2008, 2008 IEEE International Conference on Acoustics, Speech and Signal Processing, ICASSP. p. 429-432 4 p. 4517638. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    19 Scopus citations
  • Laser welding of biomaterials stained with indocyanine green to tissues

    Jacques, S. L., Barofsky, A. D., Shangguan, H. Q., Prahl, S. A. & Gregory, K. W. M. D., Dec 1 1997, Proceedings of SPIE - The International Society for Optical Engineering. Society of Photo-Optical Instrumentation Engineers, p. 54-61 8 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 2975).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    12 Scopus citations
  • Learning in linear feature-discovery networks

    Leen, T. K., Dec 1 1991, Proceedings of SPIE - The International Society for Optical Engineering. Haykin, S. (ed.). Publ by Int Soc for Optical Engineering, p. 472-481 10 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1565).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Learning invariant features of tumor signatures

    Le, Q. V., Han, J., Gray, J. W., Spellman, P. T., Borowsky, A. & Parvin, B., 2012, 2012 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012 - Proceedings. p. 302-305 4 p. 6235544. (Proceedings - International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    25 Scopus citations
  • Light-induced basilar membrane vibrations in the sensitive cochlea

    Grosh, K., Ren, T., He, W., Fridberger, A., Li, Y. & Nankali, A., Dec 31 2015, Mechanics of Hearing: Protein to Perception - Proceedings of the 12th International Workshop on the Mechanics of Hearing. American Institute of Physics Inc., Vol. 1703. 070005

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Limitations of photoacoustic measurement of burn depth

    Viator, J. A. & Jacques, S. L., Dec 1 2005, Proceedings of the ASME Summer Heat Transfer Conference, HT 2005. p. 849-854 6 p. HT2005-72354. (Proceedings of the ASME Summer Heat Transfer Conference; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Linking visual appearance of skin to the underlying optical properties using multispectral imaging

    Choudhury, N., Samatham, R. & Jacques, S. L., Dec 1 2010, Photonic Therapeutics and Diagnostics VI. 75480G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7548).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • Localized multiple kernel learning

    Gönen, M. & Alpaydin, E., 2008, Proceedings of the 25th International Conference on Machine Learning. Association for Computing Machinery (ACM), p. 352-359 8 p. (Proceedings of the 25th International Conference on Machine Learning).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    239 Scopus citations
  • Localized multiple kernel regression

    Gönen, M. & Alpaydin, E., Nov 18 2010, Proceedings - 2010 20th International Conference on Pattern Recognition, ICPR 2010. p. 1425-1428 4 p. 5597404. (Proceedings - International Conference on Pattern Recognition).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    26 Scopus citations
  • LV motion tracking from 3D echocardiography using textural and structural information

    Myronenko, A., Song, X. & Sahn, D., 2007, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). PART 2 ed. Vol. 4792 LNCS. p. 428-435 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4792 LNCS, no. PART 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Macrophages: Modulators of breast cancer progression

    Lin, E. Y. & Pollard, J. W., Dec 1 2004, Cancer and Inflammation. p. 158-168 11 p. (Novartis Foundation Symposium; vol. 256).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    98 Scopus citations
  • Making sense of large data sets without annotations: Analyzing age-related correlations from lung CT scans

    Dicente Cid, Y., Mamonov, A., Beers, A., Thomas, A., Kovalev, V., Kalpathy-Cramer, J. & Müller, H., 2017, Medical Imaging 2017: Imaging Informatics for Healthcare, Research, and Applications. Cook, T. S. & Zhang, J. (eds.). SPIE, 1013809. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10138).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Manual query modification and data fusion for medical image retrieval

    Jensen, J. R. & Hersh, W. R., Jan 1 2006, Accessing Multilingual Information Repositories - 6th Workshop of the Cross-Language Evalution Forum, CLEF 2005. Springer-Verlag, p. 673-679 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4022 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Mapping tissue optical attenuation to identify cancer using optical coherence tomography

    McLaughlin, R. A., Scolaro, L., Robbins, P., Saunders, C., Jacques, S. L. & Sampson, D. D., 2009, Medical Image Computing and Computer-Assisted Intervention - MICCAI2009 - 12th International Conference, Proceedings. PART 2 ed. p. 657-664 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5762 LNCS, no. PART 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    Open Access
    19 Scopus citations
  • Measurement of basilar membrane, reticular lamina, and tectorial membrane vibrations in the intact mouse cochlea

    Ren, T. & He, W., 2011, What Fire is in Mine Ears: Progress in Auditory Biomechanics - Proceedings of the 11th International Mechanics of Hearing Workshop. p. 423-428 6 p. (AIP Conference Proceedings; vol. 1403).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • Measuring body temperature time series regularity using approximate entropy and sample entropy

    Cuesta-Frau, D., Miró-Martínez, P., Oltra-Crespo, S., Varela-Entrecanales, M., Aboy, M., Novak, D. & Austin, D., Jan 1 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 3461-3464 4 p. 5334602. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    12 Scopus citations
  • Measuring in-home walking speed using wall-mounted RF transceiver arrays

    Jacobs, P. G., Wan, E. A., Schafermeyer, E., Adenwala, F., Paul, A. S., Preiser, N. & Kaye, J., Nov 2 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014. Institute of Electrical and Electronics Engineers Inc., p. 914-917 4 p. 6943740. (2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    9 Scopus citations
  • Measuring optical properties of a blood vessel model using optical coherence tomography

    Levitz, D., Hinds, M. T., Tran, N., Vartanian, K., Hanson, S. R. & Jacques, S. L., May 8 2006, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 60782B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6078).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Measuring tissue optical properties in vivo using reflectance-mode confocal microscopy and OCT

    Jacques, S. L., Samatham, R., Choudhury, N., Fu, Y. & Levitz, D., Apr 21 2008, Biomedical Applications of Light Scattering II. 68640B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6864).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    13 Scopus citations
  • Mechanism of precise tissue ablation with minimal side effects (under confined stress conditions of irradiation)

    Oraevsky, A. A., Esenaliev, R. O., Jacques, S. L. & Tittel, F. K., Jan 18 1995, Laser Interaction with Hard and Soft Tissue II. Meier, T. H., Albrecht, H. J., van Gemert, M. J. C., Steiner, R. W., Svaasand, L. O. & Delacretaz, G. P. (eds.). SPIE, p. 250-261 12 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 2323).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • Medical image retrieval and automated annotation: OHSU at ImageCLEF 2006

    Hersh, W., Kalpathy-Cramer, J. & Jensen, J., 2007, Evaluation of Multilingual and Multi-modal Information Retrieval - 7th Workshop of the Cross-Language Evaluation Forum, CLEF 2006, Revised Selected Papers. Springer-Verlag, p. 660-669 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4730 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    16 Scopus citations
  • Medical image retrieval and automatic annotation: OHSU at ImageCLEF 2007

    Kalpathy-Cramer, J. & Hersh, W., 2008, Advances in Multilingual and Multimodal Information Retrieval - 8th Workshop of the Cross-Language Evaluation Forum, CLEF 2007, Revised Selected Papers. Springer-Verlag, p. 623-630 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5152 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • Medical multimedia analysis and retrieval

    Cao, Y., Kalpathy-Cramer, J. & Ünay, D., Dec 29 2011, MM'11 - Proceedings of the 2011 ACM Multimedia Conference and Co-Located Workshops. p. 617-618 2 p. (MM'11 - Proceedings of the 2011 ACM Multimedia Conference and Co-Located Workshops).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Methods for detecting malfunctions in clinical decision support systems

    Wright, A., Hickman, T. T., McEvoy, D., Aaron, S., Ai, A., Ash, J. S., Andersen, J. M., Ramoni, R., Hauskrecht, M., Embi, P., Schreiber, R., Sittig, D. F. & Bates, D. W., 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. Gundlapalli, A. V., Marie-Christine, J. & Dongsheng, Z. (eds.). IOS Press BV, p. 1385 1 p. (Studies in Health Technology and Informatics; vol. 245).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Microfluidic device and culture platform for the observation and control of axonal growth and axonal organelle transport of rat hippocampal neurons

    Barbati, A. C., Fang, C., Banker, G. & Kirby, B. J., Jan 1 2009, Proceedings of Conference, MicroTAS 2009 - The 13th International Conference on Miniaturized Systems for Chemistry and Life Sciences. Chemical and Biological Microsystems Society, p. 481-483 3 p. (Proceedings of Conference, MicroTAS 2009 - The 13th International Conference on Miniaturized Systems for Chemistry and Life Sciences).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution