Research Output 1962 2019

2019

Accelerated experimental design for pairwise comparisons

Guo, Y., Dy, J., Erdogmus, D., Kalpathy-Cramer, J., Ostmo, S., Campbell, J., Chiang, M. & Ioannidis, S., Jan 1 2019, SIAM International Conference on Data Mining, SDM 2019. Society for Industrial and Applied Mathematics Publications, p. 432-440 9 p. (SIAM International Conference on Data Mining, SDM 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Design of experiments
Labels
Geometry

Adeno-Associated Viral Gene Therapy for Inherited Retinal Disease

Ong, T., Pennesi, M., Birch, D. G., Lam, B. L. & Tsang, S. H., Feb 1 2019, In : Pharmaceutical Research. 36, 2, 34.

Research output: Contribution to journalReview article

Gene therapy
Retinal Diseases
Viral Genes
Dependovirus
Genetic Therapy
1 Citation (Scopus)

Advancing translational science for pulmonary nontuberculous mycobacterial infections: A road map for research

Daniel-Wayman, S., Abate, G., Barber, D. L., Bermudez, L. E., Coler, R. N., Cynamon, M. H., Daley, C. L., Davidson, R. M., Dick, T., Floto, R. A., Henkle, E., Holland, S. M., Jackson, M., Lee, R. E., Nuermberger, E. L., Olivier, K. N., Ordway, D. J., Prevots, D. R., Sacchettini, J. C., Salfinger, M. & 4 others, Sassetti, C. M., Sizemore, C. F., Winthrop, K. & Zelazny, A. M., Apr 15 2019, In : American journal of respiratory and critical care medicine. 199, 8, p. 947-951 5 p.

Research output: Contribution to journalReview article

Lung
Infection
Research

Analysis of interleukin-20 receptor complexes in trabecular meshwork cells and effects of cytokine signaling in anterior segment perfusion culture

Keller, K., Yang, Y. F., Sun, Y. Y., Walter, M. R. & Wirtz, M. K., Jan 1 2019, In : Molecular vision. 25, p. 266-282 17 p.

Research output: Contribution to journalArticle

Trabecular Meshwork
Perfusion
Cytokines
Fibroblasts
Skin
1 Citation (Scopus)

Aperture phase modulation with adaptive optics: A novel approach for speckle reduction and structure extraction in optical coherence tomography

Zhang, P., Manna, S. K., Miller, E. B., Jian, Y., Meleppat, R. K., Sarunic, M. V., Pugh, E. N. & Zawadzki, R. J., Jan 1 2019, In : Biomedical Optics Express. 10, 2, p. 552-570 19 p.

Research output: Contribution to journalArticle

Optical Coherence Tomography
adaptive optics
phase modulation
tomography
apertures
2 Citations (Scopus)

A Quantitative Severity Scale for Retinopathy of Prematurity Using Deep Learning to Monitor Disease Regression after Treatment

Gupta, K., Campbell, J., Taylor, S., Brown, J. M., Ostmo, S., Chan, R. V. P., Dy, J., Erdogmus, D., Ioannidis, S., Kalpathy-Cramer, J., Kim, S. J. & Chiang, M., Jan 1 2019, In : JAMA ophthalmology.

Research output: Contribution to journalArticle

Retinopathy of Prematurity
Learning
Blood Vessels
Therapeutics
Treatment Failure
4 Citations (Scopus)

A Randomized Trial of Binocular Dig Rush Game Treatment for Amblyopia in Children Aged 7 to 12 Years

Pediatric Eye Disease Investigator Group, Mar 1 2019, In : Ophthalmology. 126, 3, p. 456-466 11 p.

Research output: Contribution to journalArticle

Amblyopia
Visual Acuity
Confidence Intervals
Therapeutics
Anisometropia
1 Citation (Scopus)

Assessment of Novel Genome-Wide Significant Gene Loci and Lesion Growth in Geographic Atrophy Secondary to Age-Related Macular Degeneration

Grassmann, F., Harsch, S., Brandl, C., Kiel, C., Nürnberg, P., Toliat, M. R., Fleckenstein, M., Pfau, M., Schmitz-Valckenberg, S., Holz, F. G., Chew, E. Y., Swaroop, A., Ratnapriya, R., Klein, M., Mulyukov, Z., Zamiri, P. & Weber, B. H. F., Jan 1 2019, In : JAMA ophthalmology.

Research output: Contribution to journalArticle

Geographic Atrophy
Macular Degeneration
Genome
Growth
Genes

Assessment of Orbital Computed Tomography (CT) Imaging Biomarkers in Patients with Thyroid Eye Disease

Chaganti, S., Mundy, K., DeLisi, M. P., Nelson, K. M., Harrigan, R. L., Galloway, R. L., Landman, B. A. & Mawn, L. A., Jan 1 2019, In : Journal of Digital Imaging.

Research output: Contribution to journalArticle

Eye Diseases
Thyroid Diseases
Biomarkers
Tomography
Imaging techniques
2 Citations (Scopus)

Autoimmunity to bactericidal/permeability-increasing protein in bronchiectasis exhibits a requirement for Pseudomonas aeruginosa IgG response

Skopelja-Gardner, S., Theprungsirikul, J., Meagher, R. E., Beliveau, C. M., Bradley, K. E., Avery, M., Henkle, E., Siegel, S., Gifford, A. H., Winthrop, K. & Rigby, W. F. C., Feb 1 2019, In : European Respiratory Journal. 53, 2, 1801891.

Research output: Contribution to journalLetter

Bronchiectasis
Autoimmunity
Pseudomonas aeruginosa
Immunoglobulin G
bactericidal permeability increasing protein
1 Citation (Scopus)

Automated detection of shadow artifacts in optical coherence tomography angiography

Camino, A., Yali, J., Yu, J., Wang, J., Liu, L. & Huang, D., Mar 1 2019, In : Biomedical Optics Express. 10, 3, p. 1514-1531 18 p., #357543.

Research output: Contribution to journalArticle

angiography
Optical Coherence Tomography
Artifacts
artifacts
Angiography
1 Citation (Scopus)

Automated phase unwrapping in Doppler optical coherence tomography

Pi, S., Camino, A., Wei, X., Hormel, T. T., Cepurna, W., Morrison, J. & Yali, J., Jan 1 2019, In : Journal of Biomedical Optics. 24, 1, p. 1-4 4 p.

Research output: Contribution to journalArticle

Optical tomography
tomography
retina
blood flow
Phase shift

Bartonella presenting as branch retinal artery occlusion in a child

Redd, T., Lin, P. & Loh, A., Apr 1 2019, In : Journal of AAPOS. 23, 2, p. 121-123 3 p.

Research output: Contribution to journalArticle

Bartonella
Retinal Artery Occlusion
Bartonella Infections
Bartonella henselae
Pediatrics

Case 8-2019: A 58-year-old woman with vision loss, headaches, and oral ulcers

Rosenbaum, J. J., Rifkin, L. M., Buch, K. A., Barshak, M. B. & Hoang, M. P., Mar 14 2019, In : New England Journal of Medicine. 380, 11, p. 1062-1071 10 p.

Research output: Contribution to journalArticle

Oral Ulcer
Headache

Changes in Electronic Health Record Use Time and Documentation over the Course of a Decade

Goldstein, I. H., Hwang, T., Gowrisankaran, S., Bales, R., Chiang, M. & Hribar, M., Jan 1 2019, In : Ophthalmology.

Research output: Contribution to journalArticle

Electronic Health Records
Documentation
Office Visits
Linear Models
Ophthalmology
Cornea
Blood Cells
Multiple Myeloma
Monoclonal Gammopathy of Undetermined Significance
Proteins

Classification and comparison via neural networks

Yıldız, İ., Tian, P., Dy, J., Erdoğmuş, D., Brown, J., Kalpathy-Cramer, J., Ostmo, S., Campbell, J., Chiang, M. & Ioannidis, S., Oct 1 2019, In : Neural Networks. 118, p. 65-80 16 p.

Research output: Contribution to journalArticle

Area Under Curve
Labels
Neural networks
Learning
Network architecture
5 Citations (Scopus)

Clinical-grade stem cell-derived retinal pigment epithelium patch rescues retinal degeneration in rodents and pigs

Sharma, R., Khristov, V., Rising, A., Jha, B. S., Dejene, R., Hotaling, N., Li, Y., Stoddard, J., Stankewicz, C., Wan, Q., Zhang, C., Campos, M. M., Miyagishima, K. J., McGaughey, D., Villasmil, R., Mattapallil, M., Stanzel, B., Qian, H., Wong, W., Chase, L. & 6 others, Charles, S., McGill, T., Miller, S., Maminishkis, A., Amaral, J. & Bharti, K., Jan 16 2019, In : Science Translational Medicine. 11, 475, eaat5580.

Research output: Contribution to journalArticle

Retinal Degeneration
Retinal Pigment Epithelium
Induced Pluripotent Stem Cells
Rodentia
Swine

CLINICAL PATHOLOGIC CORRELATION OF SARCOIDOSIS-ASSOCIATED MULTIFOCAL CHORIORETINITIS IN AN ELDERLY PATIENT

Saleh, M. G. A., OʼDonnell, J. L., Davis, R. P., Wilson, D. & Lin, P., Mar 1 2019, In : Retinal cases & brief reports. 13, 2, p. 154-157 4 p.

Research output: Contribution to journalArticle

Chorioretinitis
Sarcoidosis
Adrenal Cortex Hormones
Intraocular Lymphoma
Panuveitis

Corneal Higher-Order Aberrations in Descemet Membrane Endothelial Keratoplasty versus Ultrathin DSAEK in the Descemet Endothelial Thickness Comparison Trial: A Randomized Clinical Trial

Duggan, M. J., Rose-Nussbaumer, J., Lin, C. C., Austin, A., Labadzinzki, P. C. & Chamberlain, W., Jan 1 2019, In : Ophthalmology.

Research output: Contribution to journalArticle

Descemet Stripping Endothelial Keratoplasty
Descemet Membrane
Corneal Transplantation
Randomized Controlled Trials
Visual Acuity

Corneal Substructure Dosimetry Predicts Corneal Toxicity in Patients With Uveal Melanoma Treated With Proton Beam Therapy

Lee, H. J., Stacey, A., Klesert, T. R., Wells, C., Skalet, A., Bloch, C., Fung, A., Bowen, S. R., Wong, T. P., Shibata, D., Halasz, L. M. & Rengan, R., Jan 1 2019, In : International Journal of Radiation Oncology Biology Physics.

Research output: Contribution to journalArticle

Proton Therapy
substructures
proton beams
toxicity
dosimeters

Correlation of Outer Retinal Degeneration and Choriocapillaris Loss in Stargardt Disease Using En Face Optical Coherence Tomography and Optical Coherence Tomography Angiography

Alabduljalil, T., Patel, R. C., Alqahtani, A. A., Gao, S. S., Gale, M. J., Zhang, M., Yali, J., Huang, D., Chiang, P-W., Chen, R., Wang, J., Weleber, R., Pennesi, M. & Yang, P., Jun 1 2019, In : American journal of ophthalmology. 202, p. 79-90 12 p.

Research output: Contribution to journalArticle

Retinal Degeneration
Retinal Pigment Epithelium
Optical Coherence Tomography
Angiography
Blood Vessels
Open Access
Ophthalmology
Pharmaceutical Preparations
corrigendum
Therapeutics

Culture-proven endophthalmitis after intravitreal injection: A 10-year analysis

Simonett, J. M., Igelman, A., Taylor, S. C., Campbell, J., Hwang, T., Lin, P., Lauer, A. A. & Flaxel, C., Jan 1 2019, In : Ophthalmic Surgery Lasers and Imaging Retina. 50, 1, p. 33-38 6 p.

Research output: Contribution to journalArticle

Intravitreal Injections
Endophthalmitis
antineoplaston A10
Northwestern United States
Geographic Locations

Deep learning in ophthalmology: The technical and clinical considerations

Ting, D. S. W., Peng, L., Varadarajan, A. V., Keane, P. A., Burlina, P. M., Chiang, M., Schmetterer, L., Pasquale, L. R., Bressler, N. M., Webster, D. R., Abramoff, M. & Wong, T. Y., Jan 1 2019, In : Progress in Retinal and Eye Research.

Research output: Contribution to journalReview article

Ophthalmology
Learning
Artificial Intelligence
Eye Diseases
Macular Degeneration
1 Citation (Scopus)

Describing Retinopathy of Prematurity: Current Limitations and New Challenges

Fielder, A. R., Wallace, D. K., Stahl, A., Reynolds, J. D., Chiang, M. & Quinn, G. E., May 1 2019, In : Ophthalmology. 126, 5, p. 652-654 3 p.

Research output: Contribution to journalEditorial

Open Access
Retinopathy of Prematurity

Detailed clinical characterisation, unique features and natural history of autosomal recessive RDH12 -associated retinal degeneration

Fahim, A. T., Bouzia, Z., Branham, K. H., Kumaran, N., Vargas, M. E., Feathers, K. L., Perera, N. D., Young, K., Khan, N. W., Heckenlively, J. R., Webster, A. R., Pennesi, M., Ali, R. R., Thompson, D. A. & Michaelides, M., Jan 1 2019, In : British Journal of Ophthalmology.

Research output: Contribution to journalArticle

Retinal Degeneration
Natural History
Electroretinography
Atrophy
Leber Congenital Amaurosis

Detailed retinal phenotype of Boucher-Neuhäuser syndrome associated with mutations in PNPLA6 mimicking choroideremia

O’Neil, E., Serrano, L., Scoles, D., Cunningham, K. E., Han, G., Chiang, P-W., Bennett, J. & Aleman, T. S., May 4 2019, In : Ophthalmic Genetics. 40, 3, p. 267-275 9 p.

Research output: Contribution to journalArticle

Choroideremia
Islands
Atrophy
Electroretinography
Retina

Diagnostic and Therapeutic Challenges

Thomas, M., Shah, A. R., Besirli, C. G. & Drenser, K. A., Apr 1 2019, In : Retina (Philadelphia, Pa.). 39, 4, p. 794-797 4 p.

Research output: Contribution to journalArticle

Therapeutics

Direct-acting antivirals for hepatitis C: Predictors of early discontinuation in the real world

De Ávila Machado, M. A., De Moura, C. S., Klein, M., Winthrop, K., Carleton, B., Abrahamowicz, M., Feld, J., Curtis, J. R., Beauchamp, M. E. & Bernatsky, S., Jan 1 2019, In : Journal of Managed Care and Specialty Pharmacy. 25, 6, p. 697-704 8 p.

Research output: Contribution to journalArticle

Hepatitis C
Ritonavir
Antiviral Agents
Viruses
Hepacivirus

Directional optical coherence tomography reveals melanin concentration-dependent scattering properties of retinal pigment epithelium

Meleppat, R. K., Zhang, P., Ju, M. J., Manna, S. K., Jian, Y., Pugh, E. N. & Zawadzki, R. J., Jun 30 2019, In : Journal of biomedical optics. 24, 6, 066011.

Research output: Contribution to journalArticle

Open Access
Melanin
melanin
Retinal Pigments
epithelium
Optical tomography
1 Citation (Scopus)

Disruption of Intestinal Homeostasis and Intestinal Microbiota During Experimental Autoimmune Uveitis

Janowitz, C., Nakamura, Y. K., Metea, C., Gligor, A., Yu, W., Karstens, L., Rosenbaum, J. J., Asquith, M. & Lin, P., Jan 2 2019, In : Investigative ophthalmology & visual science. 60, 1, p. 420-429 10 p.

Research output: Contribution to journalArticle

Uveitis
Homeostasis
Permeability
Peptides
Dysbiosis

Early Diagnosis and Management of Aggressive Posterior Vitreoretinopathy Presenting in Premature Neonates

Gupta, M. P., Yonekawa, Y., Campbell, J., Rusu, I., Zahid, S., Patel, S. N., Chau, F., Jonas, K. E., Oltra, E., Orlin, A., Chang, J., Horowitz, J., Abramson, D. H., Marr, B., Capone, A. & Paul Chan, R. V., Apr 1 2019, In : Ophthalmic surgery, lasers & imaging retina. 50, 4, p. 201-207 7 p.

Research output: Contribution to journalArticle

Retinal Detachment
Retina
Early Diagnosis
Lasers
Newborn Infant

Early Optic Nerve Head Glial Proliferation and Jak-Stat Pathway Activation in Chronic Experimental Glaucoma

Lozano, D. C., Choe, T. E., Cepurna, W. O., Morrison, J. & Johnson, E., Mar 1 2019, In : Investigative ophthalmology & visual science. 60, 4, p. 921-932 12 p.

Research output: Contribution to journalArticle

Open Access
Optic Disk
Neuroglia
Glaucoma
Astrocytes
Wounds and Injuries
1 Citation (Scopus)
Descemet Stripping Endothelial Keratoplasty
Corneal Transplantation
Descemet Membrane
Randomized Controlled Trials
National Eye Institute (U.S.)
1 Citation (Scopus)

Evaluating changes of blood flow in retina, choroid, and outer choroid in rats in response to elevated intraocular pressure by 1300 nm swept-source OCT

Xu, J., Li, Y., Song, S., Cepurna, W., Morrison, J. & Wang, R. K., Jan 1 2019, In : Microvascular Research. 121, p. 37-45 9 p.

Research output: Contribution to journalArticle

Choroid
Intraocular Pressure
Retina
Rats
Optical tomography

Evaluation of computer-based retinopathy of prematurity (ROP) education for ophthalmology residents: a randomized, controlled, multicenter study

Roohipoor, R., Alvarez, R., Brodowska, K., Yaseri, M., Kloek, C., Riazi, M., Nourinia, R., Nikkhah, H., Prajna, N. V., Krishnan, C., Tuli, S., Green, L., Srikumaran, D., Shah, A. S., Mantagos, I. S., Chiang, M., Chan, R. V. P. & Loewenstein, J., Jan 1 2019, In : Journal of AAPOS.

Research output: Contribution to journalArticle

Retinopathy of Prematurity
Ophthalmology
Multicenter Studies
Education
Control Groups

Evaluation of pneumococcal and tetanus vaccine responses in patients with rheumatoid arthritis receiving baricitinib: Results from a long-term extension trial substudy

Winthrop, K., Bingham, C. O., Komocsar, W. J., Bradley, J., Issa, M., Klar, R. & Kartman, C. E., Apr 18 2019, In : Arthritis Research and Therapy. 21, 1, 102.

Research output: Contribution to journalArticle

Open Access
Pneumococcal Vaccines
Tetanus Toxoid
Rheumatoid Arthritis
Vaccination
Tetanus

Femtosecond laser-assisted deep anterior lamellar keratoplasty

Chamberlain, W., Jul 1 2019, In : Current opinion in ophthalmology. 30, 4, p. 256-263 8 p.

Research output: Contribution to journalArticle

Corneal Transplantation
Lasers
Trephining
Descemet Membrane
Technology
Antineutrophil Cytoplasmic Antibodies
Vasculitis
Pathology
Gene Expression
Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis

Gordonia bronchialis– Associated endophthalmitis, Oregon, USA

Choi, R., Strnad, L., Flaxel, C., Lauer, A. A. & Suhler, E., May 1 2019, In : Emerging Infectious Diseases. 25, 5, p. 1017-1019 3 p.

Research output: Contribution to journalLetter

Open Access
Endophthalmitis
Eye Infections
Actinobacteria
Infection

GPR158 in the visual system: Homeostatic role in regulation of intraocular pressure

Itakura, T., Webster, A., Chintala, S. K., Wang, Y., Gonzalez, J. M., Tan, J. C., Vranka, J., Acott, T., Craft, C. M., Sibug Saber, M. E., Jeong, S., Stamer, W. D., Martemyanov, K. A. & Fini, M. E., May 1 2019, In : Journal of Ocular Pharmacology and Therapeutics. 35, 4, p. 203-215 13 p.

Research output: Contribution to journalArticle

Open Access
Ocular Hypertension
Intraocular Pressure
Trabecular Meshwork
Knockout Mice
Epinephrine
1 Citation (Scopus)

Imaging in retinopathy of prematurity

Valikodath, N., Cole, E., Chiang, M., Campbell, J. & Chan, R. V. P., Mar 1 2019, In : Asia-Pacific Journal of Ophthalmology. 8, 2, p. 178-186 9 p.

Research output: Contribution to journalReview article

Retinopathy of Prematurity
Optical Coherence Tomography
Mydriatics
Ophthalmoscopy
Telemedicine
2 Citations (Scopus)
Eye Diseases
Uveitis
Macular Degeneration
Genetic Crosses
Dysbiosis

Improved interpretability for computer-aided severity assessment of retinopathy of prematurity

Graziani, M., Brown, J. M., Andrearczyk, V., Yildiz, V., Campbell, J., Erdogmus, D., Ioannidis, S., Chiang, M., Kalpathy-Cramer, J. & Müller, H., Jan 1 2019, Medical Imaging 2019: Computer-Aided Diagnosis. Mori, K. & Hahn, H. K. (eds.). SPIE, 109501R. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10950).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Retinopathy of Prematurity
Computer aided diagnosis
learning
curvature
Learning
1 Citation (Scopus)

Individualized decision aid for diverse women with lupus nephritis (IDEA-WON): A randomized controlled trial

Singh, J. A., Fraenkel, L., Green, C., Alarcón, G. S., Barton, J., Saag, K. G., Hanrahan, L. M., Raymond, S. C., Kimberly, R. P., Leong, A. L., Reyes, E., Street, R. L., Suarez-Almazor, M. E., Eakin, G. S., Marrow, L., Morgan, C. J., Caro, B., Sloan, J. A., Jandali, B., Garcia, S. R. & 8 others, Grossman, J., Winthrop, K., Trupin, L., Dall’era, M., Meara, A., Rizvi, T., Chatham, W. W. & Yazdany, J., May 1 2019, In : PLoS medicine. 16, 5, e1002800.

Research output: Contribution to journalArticle

Open Access
Lupus Nephritis
Decision Support Techniques
Randomized Controlled Trials
Pamphlets
Immunosuppressive Agents

In the Real World: Infections Associated with Biologic and Small Molecule Therapies in Psoriatic Arthritis and Psoriasis

Siegel, S. A. R. & Winthrop, K., Jul 1 2019, In : Current rheumatology reports. 21, 7, 36.

Research output: Contribution to journalReview article

Psoriatic Arthritis
Psoriasis
Infection
Therapeutics
Interleukin-23

Intraoperative Optical Coherence Tomography to Guide Corneal Biopsy: A Case Report

Schmidt, E. M., Stiefel, H. C., Houghton, D. & Chamberlain, W., May 1 2019, In : Cornea. 38, 5, p. 639-641 3 p.

Research output: Contribution to journalArticle

Optical Coherence Tomography
Biopsy
Immunoglobulins
Pathology

Intravitreal Methotrexate for Recurrent Epithelial Downgrowth

Lambert, N. G., Wilson, D., Albert, D. M. & Chamberlain, W., Jan 1 2019, In : JAMA ophthalmology.

Research output: Contribution to journalLetter

1 Citation (Scopus)

Invariant features-based automated registration and montage for wide-field OCT angiography

Wang, J., Camino, A., Hua, X., Liu, L., Huang, D., Hwang, T. & Yali, J., Jan 1 2019, In : Biomedical Optics Express. 10, 1, p. 120-136 17 p.

Research output: Contribution to journalArticle

angiography
field of view
Angiography
tomography
retina