Research Output 2006 2019

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Conference contribution
2016

Innovative approaches to combining genotype, phenotype, epigenetic, and exposure data for precision diagnostics

Haendel, M., Kann, M. G. & Washington, N. L., 2016, Pacific Symposium on Biocomputing 2016, PSB 2016. World Scientific Publishing Co. Pte Ltd, p. 93-95 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Epigenomics
Genotype
Phenotype
2013

Eaglei-i: Ontology-driven federated search and data entry tools for discovering biomedical research resources

Haendel, M., Torniai, C., Vasilevsky, N., Hoffmann, S. & Bourges-Waldegg, D., 2013, ICBO 2013 - Proceedings of the 4th International Conference on Biomedical Ontology 2013. CEUR-WS, Vol. 1060. p. 130-131 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Data acquisition

Enabling semantic search in a biospecimen repository

Essaid, S., Torniai, C. & Haendel, M., 2013, ICBO 2013 - Proceedings of the 4th International Conference on Biomedical Ontology 2013. CEUR-WS, Vol. 1060. p. 50-53 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantics
Ontology
Text processing
Terminology
2 Citations (Scopus)

Finding common ground: Integrating the eagle-i and VIVO ontologies

Torniai, C., Essaid, S., Lowe, B., Corson-Rikert, J. & Haendel, M., 2013, ICBO 2013 - Proceedings of the 4th International Conference on Biomedical Ontology 2013. CEUR-WS, Vol. 1060. p. 46-49 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Semantics
4 Citations (Scopus)

What's in a genotype? An ontological characterization for integration of genetic variation data

Brush, M. H., Mungall, C., Washington, N. & Haendel, M., 2013, ICBO 2013 - Proceedings of the 4th International Conference on Biomedical Ontology 2013. CEUR-WS, Vol. 1060. p. 105-108 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Foundries
Computer simulation
Chemical analysis
2011
1 Citation (Scopus)

Aligning research resource and researcher representation: The eagle-i and VIVO use case

Mitchell, S., Torniai, C., Lowe, B., Corson-Rikert, J., Wilson, M., Ahmed, M., Chen, S., Ding, Y., Rejack, N. & Haendel, M., 2011, CEUR Workshop Proceedings. Vol. 833. p. 260-262 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data integration
Interoperability
Information systems
Display devices

An ontology-based approach to linking model organisms and resources to human diseases

Mungall, C. J., Anderson, D., Bandrowski, A., Canada, B., Chatyr-Aryamontri, A., Cheng, K., Conn, P. M., Dolinski, K., Ellisman, M., Eppig, J., Grethe, J. S., Kemnitz, J., Iadonato, S., Larson, S. D., Magness, C., Martone, M. E., Tyers, M., Torniai, C., Troyanskaya, O., Turner, J. & 2 others, Westerfield, M. & Haendel, M., 2011, CEUR Workshop Proceedings. Vol. 833. p. 263-265 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Gene expression
Animals
Genes
4 Citations (Scopus)

Developing an application ontology for biomedical resource annotation and retrieval: Challenges and lessons learned

Torniai, C., Brush, M., Vasilevsky, N., Segerdell, E., Wilson, M., Johnson, T., Corday, K., Shaffer, C. & Haendel, M., 2011, CEUR Workshop Proceedings. Vol. 833. p. 101-108 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Semantics
1 Citation (Scopus)

Developing a reagent application ontology within the OBO foundry framework

Brush, M. H., Vasilevsky, N., Torniai, C., Johnson, T., Shaffer, C. & Haendel, M., 2011, CEUR Workshop Proceedings. Vol. 833. p. 234-236 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Foundries
Ontology
1 Citation (Scopus)

Modularization for the cell ontology

Mungall, C. J., Haendel, M., Ireland, A., Manzoor, S., Meehan, T., Osumi-Sutherland, D., Torniai, C. & Diehl, A. D., 2011, CEUR Workshop Proceedings. Vol. 833. p. 370-376 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Foundries
Interoperability