Research Output

2020

Children with autism spectrum disorder: Pilot studies examining the salivary microbiome and implications for gut metabolism and social behavior

Forsyth, A., Raslan, K., Lyashenko, C., Bona, S., Snow, M., Khor, B., Herrman, E., Ortiz, S., Choi, D., Maier, T. & Machida, C. A., Mar 2020, In : Human Microbiome Journal. 15, 100066.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations
2019

Altered Protein Dynamics and Increased Aggregation of Human γs-Crystallin Due to Cataract-Associated Deamidations

Forsythe, H. M., Vetter, C. J., Jara, K. A., Reardon, P. N., David, L. L., Barbar, E. J. & Lampi, K. J., Oct 8 2019, In : Biochemistry. 58, 40, p. 4112-4124 13 p.

Research output: Contribution to journalArticle

5 Scopus citations

A modified flavonoid accelerates oligodendrocyte maturation and functional remyelination

Su, W., Matsumoto, S., Banine, F., Srivastava, T., Dean, J., Foster, S., Pham, P., Hammond, B., Peters, A., Girish, K. S., Rangappa, K. S., Basappa, Jose, J., Hennebold, J., Murphy, M. J., Bennett-Toomey, J., Back, S. & Sherman, L. L., Jan 1 2019, (Accepted/In press) In : GLIA.

Research output: Contribution to journalArticle

Deletion of a specific exon in the voltage-gated calcium channel gene cacophony disrupts locomotion in Drosophila larvae

Lembke, K. M., Law, A. D., Ahrar, J. & Morton, D., Jan 1 2019, In : Journal of Experimental Biology. 222, 1, jeb191106.

Research output: Contribution to journalArticle

1 Scopus citations

Distinct roles for hyaluronan in neural stem cell niches and perineuronal nets

Su, W., Matsumoto, S., Sorg, B. & Sherman, L. S., May 2019, In : Matrix Biology. 78-79, p. 272-283 12 p.

Research output: Contribution to journalReview article

4 Scopus citations

Sex-specific differences in the salivary microbiome of caries-active children

Ortiz, S., Herrman, E., Lyashenko, C., Purcell, A., Raslan, K., Khor, B., Snow, M., Forsyth, A., Choi, D., Maier, T. & Machida, C. A., Jan 1 2019, In : Journal of Oral Microbiology. 11, 1, 1653124.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations
2018

Feasibility of Electronic Health Record-Based Triggers in Detecting Dental Adverse Events

Kalenderian, E., Obadan-Udoh, E., Yansane, A., Kent, K., Hebballi, N. B., Delattre, V., Kookal, K. K., Tokede, O., White, J. & Walji, M. F., Jul 1 2018, In : Applied Clinical Informatics. 9, 3, p. 646-653 8 p.

Research output: Contribution to journalArticle

3 Scopus citations
2017

Classifying Adverse Events in the Dental Office

Kalenderian, E., Obadan-Udoh, E., Maramaldi, P., Etolue, J., Yansane, A., Stewart, D., White, J., Vaderhobli, R., Kent, K., Hebballi, N. B., Delattre, V., Kahn, M., Tokede, O., Ramoni, R. B. & Walji, M. F., Jun 30 2017, (Accepted/In press) In : Journal of patient safety.

Research output: Contribution to journalArticle

9 Scopus citations

Contribution of calpain and caspases to cell death in cultured monkey RPE cells

Nakajima, E., Hammond, K. B., Hirata, M., Shearer, T. T. & Azuma, M., Oct 1 2017, In : Investigative Ophthalmology and Visual Science. 58, 12, p. 5412-5420 9 p.

Research output: Contribution to journalArticle

7 Scopus citations

Erratum

Pelegri, F., Danilchik, M. & Sutherland, A., Jan 1 2017, In : Advances in Experimental Medicine and Biology. 953, p. E1

Research output: Contribution to journalComment/debate

Exosomal trafficking in Xenopus development

Danilchik, M. & Tumarkin, T., Jan 1 2017, In : Genesis. 55, 1-2, e23011.

Research output: Contribution to journalReview article

4 Scopus citations
1 Scopus citations

In Silico Ocular Pharmacokinetic Modeling: Delivery of Topical FK962 to Retina

Mori, A., Yabuta, C., Kishimoto, Y., Kozai, S., Ohtori, A., Shearer, T. T. & Azuma, M., Sep 1 2017, In : Journal of Ocular Pharmacology and Therapeutics. 33, 7, p. 556-566 11 p.

Research output: Contribution to journalArticle

4 Scopus citations

Murein hydrolase LytF of Streptococcus sanguinis and the ecological consequences of competence development

Cullin, N., Redanz, S., Lampi, K., Merritt, J. & Kreth, J., Dec 1 2017, In : Applied and Environmental Microbiology. 83, 24, e01709-17.

Research output: Contribution to journalArticle

4 Scopus citations

Restoration of motor defects caused by loss of drosophila TDP-43 by expression of the voltage-gated calcium channel, cacophony, in central neurons

Lembke, K. M., Scudder, C. & Morton, D., Sep 27 2017, In : Journal of Neuroscience. 37, 39, p. 9486-9497 12 p.

Research output: Contribution to journalArticle

5 Scopus citations

The zebrafish as a model system for analyzing mammalian and native α-crystallin promoter function

Posner, M., Murray, K. L., McDonald, M. S., Eighinger, H., Andrew, B., Drossman, A., Haley, Z., Nussbaum, J., David, L. L. & Lampi, K. J., 2017, In : PeerJ. 2017, 11, e4093.

Research output: Contribution to journalArticle

3 Scopus citations

Vertebrate embryonic cleavage pattern determination

Hasley, A., Chavez, S., Danilchik, M., Wühr, M. & Pelegri, F., 2017, Advances in Experimental Medicine and Biology. Springer New York LLC, Vol. 953. p. 117-171 55 p. (Advances in Experimental Medicine and Biology; vol. 953).

Research output: Chapter in Book/Report/Conference proceedingChapter

9 Scopus citations
2016

A chicken embryo cardiac outflow tract atlas for registering changes due to abnormal blood flow

Carson, J. P., Rennie, M. Y., Danilchik, M., Thornburg, K. & Rugonyi, S., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October. p. 1236-1239 4 p. 7590929

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Brg1 directly regulates Olig2 transcription and is required for oligodendrocyte progenitor cell specification

Matsumoto, S., Banine, F., Feistel, K., Foster, S., Xing, R., Struve, J. & Sherman, L. L., May 15 2016, In : Developmental Biology. 413, 2, p. 173-187 15 p.

Research output: Contribution to journalArticle

16 Scopus citations

Differences in solution dynamics between lens β-crystallin homodimers and heterodimers probed by hydrogen-deuterium exchange and deamidation

Lampi, K. J., Murray, M. R., Peterson, M. P., Eng, B. S., Yue, E., Clark, A. R., Barbar, E. & David, L. L., Jan 2016, In : Biochimica et Biophysica Acta - General Subjects. 1860, 1, p. 304-314 11 p.

Research output: Contribution to journalArticle

2 Scopus citations

FK962 induces neurite outgrowth in cultured monkey trigeminal ganglion cells

Nakajima, E., Walkup, R. D., Shearer, T. T. & Azuma, M., Oct 24 2016, (Accepted/In press) In : Graefe's Archive for Clinical and Experimental Ophthalmology. p. 1-6 6 p.

Research output: Contribution to journalArticle

1 Scopus citations

Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta

Kanost, M. R., Arrese, E. L., Cao, X., Chen, Y. R., Chellapilla, S., Goldsmith, M. R., Grosse-Wilde, E., Heckel, D. G., Herndon, N., Jiang, H., Papanicolaou, A., Qu, J., Soulages, J. L., Vogel, H., Walters, J., Waterhouse, R. M., Ahn, S. J., Almeida, F. C., An, C., Aqrawi, P. & 94 others, Bretschneider, A., Bryant, W. B., Bucks, S., Chao, H., Chevignon, G., Christen, J. M., Clarke, D. F., Dittmer, N. T., Ferguson, L. C. F., Garavelou, S., Gordon, K. H. J., Gunaratna, R. T., Han, Y., Hauser, F., He, Y., Heidel-Fischer, H., Hirsh, A., Hu, Y., Jiang, H., Kalra, D., Klinner, C., König, C., Kovar, C., Kroll, A. R., Kuwar, S. S., Lee, S. L., Lehman, R., Li, K., Li, Z., Liang, H., Lovelace, S., Lu, Z., Mansfield, J. H., McCulloch, K. J., Mathew, T., Morton, B., Muzny, D. M., Neunemann, D., Ongeri, F., Pauchet, Y., Pu, L. L., Pyrousis, I., Rao, X. J., Redding, A., Roesel, C., Sanchez-Gracia, A., Schaack, S., Shukla, A., Tetreau, G., Wang, Y., Xiong, G. H., Traut, W., Walsh, T. K., Worley, K. C., Wu, D., Wu, W., Wu, Y. Q., Zhang, X., Zou, Z., Zucker, H., Briscoe, A. D., Burmester, T., Clem, R. J., Feyereisen, R., Grimmelikhuijzen, C. J. P., Hamodrakas, S. J., Hansson, B. S., Huguet, E., Jermiin, L. S., Lan, Q., Lehman, H. K., Lorenzen, M., Merzendorfer, H., Michalopoulos, I., Morton, D. B., Muthukrishnan, S., Oakeshott, J. G., Palmer, W., Park, Y., Passarelli, A. L., Rozas, J., Schwartz, L. M., Smith, W., Southgate, A., Vilcinskas, A., Vogt, R., Wang, P., Werren, J., Yu, X. Q., Zhou, J. J., Brown, S. J., Scherer, S. E., Richards, S. & Blissard, G. W., Sep 1 2016, In : Insect Biochemistry and Molecular Biology. 76, p. 118-147 30 p.

Research output: Contribution to journalArticle

73 Scopus citations

Oral microbiota species in acute apical endodontic abscesses

George, N., Flamiatos, E., Kawasaki, K., Kim, N., Carriere, C., Phan, B., Joseph, R., Strauss, S., Kohli, R., Choi, D., Craig Baumgartner, J., Sedgley, C., Maier, T. & Machida, C. A., 2016, In : Journal of Oral Microbiology. 8, 1, 30989.

Research output: Contribution to journalArticle

10 Scopus citations

RHEB1 expression in embryonic and postnatal mouse

Tian, Q., Smart, J. L., Clement, J. H., Wang, Y., Derkatch, A., Schubert, H., Danilchik, M. V., Marks, D. L. & Fedorov, L. M., May 1 2016, In : Histochemistry and Cell Biology. 145, 5, p. 561-572 12 p.

Research output: Contribution to journalArticle

1 Scopus citations

Selecting fuchs patients for drug trials involving endothelial cell proliferation

Shearer, T. T., Chamberlain, W., Fujii, A. & Azuma, M., Nov 1 2016, In : European Journal of Ophthalmology. 26, 6, p. 536-539 4 p.

Research output: Contribution to journalArticle

1 Scopus citations
2015

Cellular mechanisms of activity-dependent BDNF expression in primary sensory neurons

Vermehren-Schmaedick, A., Khanjian, R. A. & Balkowiec, A., Dec 3 2015, In : Neuroscience. 310, p. 665-673 9 p.

Research output: Contribution to journalArticle

2 Scopus citations

Galectin-3 enhances extracellular matrix associations and wound healing in monkey corneal epithelium

Fujii, A., Shearer, T. R. & Azuma, M., Aug 1 2015, In : Experimental Eye Research. 137, p. 71-78 8 p.

Research output: Contribution to journalArticle

12 Scopus citations

Hyaluronan Synthesis, Catabolism, and Signaling in Neurodegenerative Diseases

Sherman, L. S., Matsumoto, S., Su, W., Srivastava, T. & Back, S. A., 2015, In : International Journal of Cell Biology. 2015, 368584.

Research output: Contribution to journalReview article

31 Scopus citations

Hypoxia activates calpains in the nerve fiber layer of monkey retinal explants

Hirata, M., Shearer, T. R. & Azuma, M., 2015, In : Investigative Ophthalmology and Visual Science. 56, 10, p. 6049-6057 9 p.

Research output: Contribution to journalArticle

2 Scopus citations

Role for Rab10 in methamphetamine-induced behavior

Vanderwerf, S. M., Buck, D. C., Wilmarth, P. A., Sears, L. M., David, L. L., Morton, D. B. & Neve, K. A., Aug 20 2015, In : PloS one. 10, 8, e0136167.

Research output: Contribution to journalArticle

7 Scopus citations

Serum antibodies against βH-crystallins in the American Cocker Spaniel

Kanemaki, N., Fukiage, C., Ichikawa, Y., Shearer, T. R. & Azuma, M., Mar 1 2015, In : Veterinary Ophthalmology. 18, 2, p. 109-115 7 p.

Research output: Contribution to journalArticle

Teaching Biochemistry to Students of Medicine, Pharmacy and Dentistry: 5th International Conference of the Association of Biochemistry Course Directors (ABCD) Santa Fe, NM, USA, May 3–7, 2015

Osheroff, N., Niederhoffer, E. C., Sabina, R. L., Cline, S. D., Wimmer, M. J., Franklin, D. S., Diekman, A. B., Hogg, T., Kearney, K. R., King, S. C., Pearson, D., Slaughter, C. A. & Thompson, K., Dec 1 2015, In : Medical Science Educator. 25, 4, p. 473-477 5 p.

Research output: Contribution to journalArticle

The dangers of dental devices as reported in the food and drug administration manufacturer and user facility device experience database

Hebballi, N. B., Ramoni, R., Kalenderian, E., Delattre, V. F., Stewart, D. C. L., Kent, K., White, J. M., Vaderhobli, R. & Walji, M. F., Feb 1 2015, In : Journal of the American Dental Association. 146, 2, p. 102-110 9 p.

Research output: Contribution to journalArticle

11 Scopus citations

Using ATP-driven bioluminescence assay to monitor microbial safety in a contemporary human cadaver laboratory

Benninger, B. & Maier, T., Mar 1 2015, In : Clinical Anatomy. 28, 2, p. 164-167 4 p.

Research output: Contribution to journalArticle

1 Scopus citations
2014

Activation of the mitochondrial caspase pathway and subsequent calpain activation in monkey RPE cells cultured under zinc depletion

Nakajima, E., Hammond, K. B., Shearer, T. R. & Azuma, M., Jan 2014, In : Eye (Basingstoke). 28, 1, p. 85-92 8 p.

Research output: Contribution to journalArticle

8 Scopus citations

Calpain protease causes hypoxia-induced proteolysis in cultured human Retina

Azuma, M., Hammond, K. B., Nakajima, E. & Shearer, T. R., Apr 2014, In : Current Eye Research. 39, 4, p. 421-424 4 p.

Research output: Contribution to journalArticle

6 Scopus citations

Children with severe early childhood caries: Streptococci genetic strains within carious and white spot lesions

Gilbert, K., Joseph, R., Vo, A., Patel, T., Chaudhry, S., Nguyen, U., Trevor, A., Robinson, E., Campbell, M., McLennan, J., Houran, F., Wong, T., Flann, K., Wages, M., Palmer, E. A., Peterson, J., Engle, J., Maier, T. & Machida, C. A., Jan 1 2014, In : Journal of Oral Microbiology. 6, 1, 25805.

Research output: Contribution to journalArticle

5 Scopus citations

Degeneration and dysfunction of retinal neurons in acute ocular hypertensive rats: Involvement of calpains

Suzuki, R., Oka, T., Tamada, Y., Shearer, T. R. & Azuma, M., Jun 1 2014, In : Journal of Ocular Pharmacology and Therapeutics. 30, 5, p. 419-428 10 p.

Research output: Contribution to journalArticle

8 Scopus citations

Dry eye in LASIK patients

Azuma, M., Yabuta, C., Fraunfelder, F. W. & Shearer, T. R., Jul 3 2014, In : BMC Research Notes. 7, 1, 420.

Research output: Contribution to journalArticle

12 Scopus citations

Galectin-3 enhances epithelial cell adhesion and wound healing in rat cornea

Yabuta, C., Yano, F., Fujii, A., Shearer, T. R. & Azuma, M., Jan 1 2014, In : Ophthalmic Research. 51, 2, p. 96-103 8 p.

Research output: Contribution to journalArticle

13 Scopus citations

Heterogeneous intracellular trafficking dynamics of brain-derived neurotrophic factor complexes in the neuronal soma revealed by single quantum dot tracking

Vermehren-Schmaedick, A., Krueger, W., Jacob, T., Ramunno-Johnson, D., Balkowiec, A., Lidke, K. A. & Vu, T. Q., Apr 14 2014, In : PloS one. 9, 4, e95113.

Research output: Contribution to journalArticle

18 Scopus citations
55 Scopus citations

Loss of calpastatin leads to activation of calpain in human lens epithelial cells

Nakajima, T., Shearer, T. R. & Azuma, M., Jul 22 2014, In : Investigative Ophthalmology and Visual Science. 55, 8, p. 5278-5283 6 p.

Research output: Contribution to journalArticle

5 Scopus citations

Mechanism for laser-induced neovascularization in rat choroid: Accumulation of integrin α chain-positive cells and their ligands

Nakajima, T., Hirata, M., Shearer, T. R. & Azuma, M., Jun 19 2014, In : Molecular vision. 20, p. 864-871 8 p.

Research output: Contribution to journalArticle

7 Scopus citations

Motor neuron expression of the voltage-gated calcium channel cacophony restores locomotion defects in a Drosophila, TDP-43 loss of function model of ALS

Chang, J. C., Hazelett, D. J., Stewart, J. A. & Morton, D. B., Oct 10 2014, In : Brain research. 1584, p. 39-51 13 p.

Research output: Contribution to journalArticle

21 Scopus citations

Symmetry breakage in the vertebrate embryo: When does it happen and how does it work?

Blum, M., Schweickert, A., Vick, P., Wright, C. V. E. & Danilchik, M. V., Sep 1 2014, In : Developmental Biology. 393, 1, p. 109-123 15 p.

Research output: Contribution to journalArticle

59 Scopus citations
2013

Blastocoel-spanning filopodia in cleavage-stage Xenopus laevis: Potential roles in morphogen distribution and detection

Danilchik, M., Williams, M. & Brown, E., Oct 1 2013, In : Developmental Biology. 382, 1, p. 70-81 12 p.

Research output: Contribution to journalArticle

22 Scopus citations

Concerted inhibition of HIF-1α and -2α expression markedly suppresses angiogenesis in cultured RPE cells

Nakajima, T., Nakajima, E., Shearer, T. R. & Azuma, M., Jul 22 2013, In : Molecular and Cellular Biochemistry. 383, 1-2, p. 113-122 10 p.

Research output: Contribution to journalArticle

6 Scopus citations

Digestion products of the PH20 hyaluronidase inhibit remyelination

Preston, M., Gong, X., Su, W., Matsumoto, S. G., Banine, F., Winkler, C., Foster, S., Xing, R., Struve, J., Dean, J., Baggenstoss, B., Weigel, P. H., Montine, T. J., Back, S. A. & Sherman, L. S., Feb 1 2013, In : Annals of Neurology. 73, 2, p. 266-280 15 p.

Research output: Contribution to journalArticle

68 Scopus citations